IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1644	 29.77	-2	1852720..1853196	-	158	15603508	-	PM1643	-	hypothetical protein
1645	 35.38	-1	1853250..1854227	-	325	15603509	-	PM1644	-	hypothetical protein
1646	 40.79	0	1854276..1854731	-	151	15603510	rpiA_1	PM1645	-	hypothetical protein
1647	 38.78	0	1854753..1855706	-	317	15603511	-	PM1646	-	hypothetical protein
1648	 31.94	-2	1855699..1856559	-	286	15603512	-	PM1647	-	hypothetical protein
1649	 40.90	0	1856738..1857424	-	228	15603513	-	PM1648	-	hypothetical protein
1650	 41.79	0	1857366..1858370	-	334	15603514	-	PM1649	-	hypothetical protein
1651	 37.48	0	1858391..1859404	-	337	15603515	pdxA	PM1650	-	4-hydroxythreonine-4-phosphate dehydrogenase
1652	 36.72	-1	1859742..1860746	+	334	15603516	-	PM1651	-	hypothetical protein
1653	 36.36	-1	1860770..1861330	+	186	15603517	-	PM1652	-	hypothetical protein
1654	 38.41	0	1861327..1862607	+	426	15603518	-	PM1653	-	hypothetical protein
1655	 35.37	-1	1862604..1862849	-	81	15603519	-	PM1654	-	hypothetical protein
1656	 34.35	-1	1863372..1863764	-	130	15603520	-	PM1655	-	hypothetical protein
1657	 37.40	0	1863807..1864298	-	163	15603521	-	PM1656	-	nucleotide-binding protein
1658	 40.91	0	1864305..1865267	-	320	15603522	serB	PM1657	-	phosphoserine phosphatase
1659	 35.24	-1	1865347..1866027	+	226	15603523	-	PM1658	-	hypothetical protein
1660	 39.77	0	1866084..1866347	-	87	161723307	rpsT	PM1659	-	30S ribosomal protein S20
1661	 43.51	0	1866701..1868233	+	510	15603525	mviN	PM1660	-	hypothetical protein
1662	 42.09	0	1868322..1869257	+	311	15603526	ribF	PM1661	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1663	 42.84	0	1869291..1872089	+	932	15603527	ileS	PM1662	-	isoleucyl-tRNA synthetase
1664	 36.14	-1	1872200..1872697	+	165	15603528	lspA	PM1663	-	lipoprotein signal peptidase
1665	 44.97	+1	1872710..1873654	+	314	15603529	ispH	PM1664	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1666	 35.92	-1	1873933..1874280	+	115	15603530	-	PM1665	-	hypothetical protein
1667	 42.36	0	1874401..1875009	+	202	15603531	-	PM1666	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1668	 38.18	0	1875012..1875692	+	226	15603532	-	PM1667	-	hypothetical protein
1669	 45.06	+1	1875702..1876025	+	107	15603533	-	PM1668	-	hypothetical protein
1670	 40.61	0	1876025..1877179	+	384	15603534	-	PM1669	-	coproporphyrinogen III oxidase
1671	 44.39	+1	1877331..1877990	+	219	15603535	rpiA_2	PM1670	-	ribose-5-phosphate isomerase A
1672	 41.44	0	1878008..1879240	+	410	15603536	serA	PM1671	-	D-3-phosphoglycerate dehydrogenase
1673	 41.45	0	1879373..1880419	+	348	15603537	-	PM1672	-	hypothetical protein
1674	 46.51	+1	1880421..1881050	+	209	161723306	tdk	PM1673	-	thymidylate kinase
1675	 42.38	0	1881055..1882038	+	327	15603539	holB	PM1674	-	DNA polymerase III subunit delta'
1676	 40.61	0	1882042..1882824	+	260	15603540	-	PM1675	-	hypothetical protein
1677	 39.43	0	1882869..1883393	+	174	15603541	-	PM1676	-	hypothetical protein
1678	 41.04	0	1883439..1884788	+	449	15603542	-	PM1677	-	hypothetical protein
1679	 38.84	0	1885063..1886187	+	374	15603543	-	PM1678	-	hypothetical protein
1680	 39.69	0	1886317..1887276	+	319	15603544	-	PM1679	-	hypothetical protein
1681	 36.42	-1	1887341..1887793	+	150	15603545	-	PM1680	-	hypothetical protein
1682	 43.09	0	1887802..1889298	+	498	15603546	-	PM1681	-	hypothetical protein
1683	 42.80	0	1889312..1890673	+	453	15603547	-	PM1682	-	hypothetical protein
1684	 40.87	0	1890905..1892854	+	649	15603548	-	PM1683	-	hypothetical protein
1685	 42.81	0	1893034..1894173	+	379	15603549	nhaA	PM1684	-	NhaA
1686	 41.60	0	1894345..1895046	+	233	15603550	-	PM1685	-	hypothetical protein
1687	 41.76	0	1895121..1895927	+	268	15603551	ubiE	PM1686	-	hypothetical protein
1688	 38.39	0	1896262..1896894	+	210	15603552	-	PM1687	-	hypothetical protein
1689	 41.86	0	1896912..1898495	+	527	15603553	aarF	PM1688	-	hypothetical protein
1690	 34.63	-1	1898604..1898834	+	76	15603554	tatA	PM1689	-	twin argininte translocase protein A
1691	 42.53	0	1898834..1899409	+	191	15603555	-	PM1690	-	sec-independent translocase
1692	 43.36	0	1899409..1900146	+	245	15603556	tatC	PM1691	-	hypothetical protein
1693	 43.08	0	1900218..1901243	+	341	15603557	hemB	PM1692	-	delta-aminolevulinic acid dehydratase
1694	 44.62	+1	1901319..1902266	-	315	15603558	cysK	PM1693	-	hypothetical protein
1695	 38.43	0	1902376..1903179	-	267	15603559	cysZ	PM1694	-	putative sulfate transport protein CysZ
1696	 40.95	0	1903351..1904322	+	323	15603560	zipA	PM1695	-	cell division protein ZipA
1697	 43.23	0	1904378..1904983	-	201	15603561	-	PM1696	-	putative glycerol-3-phosphate acyltransferase PlsY
1698	 41.18	0	1905089..1905445	+	118	15603562	folB	PM1697	-	hypothetical protein
1699	 40.84	0	1905442..1906347	+	301	15603563	-	PM1698	-	hypothetical protein
1700	 40.19	0	1906369..1906791	-	140	15603564	-	PM1699	-	hypothetical protein
1701	 43.18	0	1906814..1907524	-	236	15603565	-	PM1700	-	hypothetical protein
1702	 41.22	0	1907534..1908421	-	295	15603566	xerC	PM1701	-	site-specific tyrosine recombinase XerC
1703	 40.20	0	1908463..1909161	-	232	15603567	-	PM1702	-	hypothetical protein
1704	 43.64	0	1909688..1910512	-	274	15603568	dapF	PM1703	-	diaminopimelate epimerase
1705	 43.81	0	1910791..1913358	+	855	15603569	clpB	PM1704	-	ClpB
1706	 39.20	0	1913515..1913889	+	124	15603570	trx	PM1705	-	Trx
1707	 44.86	+1	1913905..1914633	+	242	15603571	dsbD_2	PM1706	-	DsbD
1708	 41.56	0	1914725..1915867	-	380	15603572	-	PM1707	-	hypothetical protein
1709	 39.16	0	1915996..1917900	-	634	15603573	-	PM1708	-	hypothetical protein
1710	 37.30	0	1917948..1918931	-	327	15603574	-	PM1709	-	hypothetical protein
1711	 40.00	0	1919175..1919789	+	204	15603575	-	PM1710	-	hypothetical protein
1712	 45.71	+1	1919956..1920642	+	228	15603576	-	PM1711	-	N-acetylmannosamine-6-phosphate 2-epimerase
1713	 45.86	+1	1920664..1921557	+	297	15603577	-	PM1712	-	N-acetylmannosamine kinase
1714	 36.97	-1	1921567..1922034	+	155	15603578	-	PM1713	-	hypothetical protein
1715	 38.87	0	1922061..1922927	+	288	15603579	-	PM1714	-	hypothetical protein
1716	 39.12	0	1922948..1923829	+	293	15603580	nanA	PM1715	-	N-acetylneuraminate lyase
1717	 44.61	+1	1923922..1925943	-	673	15603581	ligA	PM1716	-	NAD-dependent DNA ligase LigA
1718	 40.74	0	1926140..1928692	+	850	15603582	-	PM1717	-	hypothetical protein
1719	 42.45	0	1928776..1929510	-	244	15603583	-	PM1718	-	hypothetical protein
1720	 44.10	+1	1929522..1930496	-	324	15603584	rluD	PM1719	-	23S rRNA pseudouridine synthase D
1721	 40.10	0	1930602..1931384	+	260	15603585	-	PM1720	-	hypothetical protein
1722	 40.66	0	1931440..1932012	-	190	15603586	-	PM1721	-	hypothetical protein
1723	 37.95	0	1932292..1932594	-	100	15603587	-	PM1722	-	hypothetical protein
1724	 41.17	0	1932738..1933286	+	182	15603588	-	PM1723	-	hypothetical protein
1725	 40.72	0	1933310..1934635	+	441	15603589	pepP	PM1724	-	hypothetical protein
1726	 43.78	0	1934647..1935852	+	401	15603590	-	PM1725	-	hypothetical protein
1727	 42.56	0	1935855..1937024	+	389	15603591	visC	PM1726	-	VisC
1728	 37.48	0	1943110..1943664	-	184	15603592	-	PM1727	-	D,D-heptose 1,7-bisphosphate phosphatase
1729	 38.55	0	1943857..1944891	+	344	15603593	metN	PM1728	-	DL-methionine transporter ATP-binding subunit
1730	 40.00	0	1944884..1945573	+	229	15603594	-	PM1729	-	hypothetical protein
1731	 38.27	0	1945617..1946447	+	276	15603595	plpB	PM1730	-	PlpB
1732	 43.15	0	1947165..1948997	-	610	15603596	glmS	PM1731	-	D-fructose-6-phosphate amidotransferase
1733	 41.76	0	1949201..1949473	-	90	15603597	hupA	PM1732	-	hypothetical protein
1734	 38.24	0	1949625..1950215	-	196	15603598	-	PM1733	-	hypothetical protein
1735	 44.41	+1	1950230..1951294	-	354	15603599	uroD	PM1734	-	UroD
1736	 43.77	0	1951291..1952085	-	264	15603600	nudC	PM1735	-	NADH pyrophosphatase
1737	 43.98	0	1952228..1956481	-	1417	15603601	rpoC	PM1736	-	DNA-directed RNA polymerase subunit beta'
1738	 42.52	0	1956592..1960620	-	1342	15603602	rpoB	PM1737	-	DNA-directed RNA polymerase subunit beta
1739	 42.82	0	1960895..1961263	-	122	15603603	rplL	PM1738	-	50S ribosomal protein L7/L12
1740	 42.07	0	1961315..1961806	-	163	15603604	rplJ	PM1739	-	50S ribosomal protein L10
1741	 42.12	0	1962360..1963736	+	458	15603605	gntP	PM1740	-	GntP
1742	 43.63	0	1963749..1964894	+	381	15603606	-	PM1741	-	hypothetical protein
1743	 40.87	0	1964961..1965650	-	229	15603607	rplA	PM1742	-	50S ribosomal protein L1
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.