IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1524	 43.40	0	1721515..1723113	-	532	15603388	-	PM1523	-	hypothetical protein
1525	 36.02	-1	1723279..1724283	+	334	15603389	hpaA	PM1524	-	HpaA
1526	 42.42	0	1724438..1725460	+	340	15603390	dctP	PM1525	-	hypothetical protein
1527	 42.42	0	1725479..1726006	+	175	15603391	-	PM1526	-	hypothetical protein
1528	 44.24	+1	1726011..1727339	+	442	15603392	-	PM1527	-	hypothetical protein
1529	 45.78	+1	1727351..1728025	+	224	15603393	hpaG_1	PM1528	-	HpaG
1530	 43.27	0	1728039..1728803	+	254	15603394	hpaG_2	PM1529	-	HpaG
1531	 44.42	+1	1728824..1730284	+	486	15603395	hpaE	PM1530	-	HpaE
1532	 44.56	+1	1730303..1731148	+	281	15603396	hpaD	PM1531	-	HpaD
1533	 41.41	0	1731227..1731610	+	127	15603397	hpaF	PM1532	-	HpaF
1534	 44.42	+1	1731653..1732852	+	399	15603398	bcr_2	PM1533	-	Bcr
1535	 43.28	0	1732866..1733669	+	267	15603399	hpaH	PM1534	-	HpaH
1536	 46.32	+1	1733695..1734495	+	266	15603400	hpaI	PM1535	-	HpaI
1537	 45.65	+1	1734499..1735959	+	486	15603401	attK	PM1536	-	AttK
1538	 42.77	0	1736117..1737823	+	568	15603402	hsdM	PM1537	-	hypothetical protein
1539	 35.70	-1	1737837..1739144	+	435	15603403	hsdA	PM1538	-	HsdA
1540	 30.33	-2	1739179..1740744	+	521	15603404	-	PM1539	-	hypothetical protein
1541	 34.73	-1	1740835..1741764	+	309	15603405	-	PM1540	-	hypothetical protein
1542	 42.56	0	1741948..1745121	+	1057	15603406	hsdR	PM1541	-	hypothetical protein
1543	 42.30	0	1745289..1746905	-	538	15603407	pckA	PM1542	-	phosphoenolpyruvate carboxykinase
1544	 34.88	-1	1747090..1747800	-	236	15603408	-	PM1543	-	hypothetical protein
1545	 42.21	0	1747980..1748531	-	183	15603409	nudE	PM1544	-	ADP-ribose diphosphatase NudE
1546	 38.91	0	1748612..1749274	+	220	15603410	-	PM1545	-	hypothetical protein
1547	 41.13	0	1749281..1749703	+	140	15603411	-	PM1546	-	hypothetical protein
1548	 42.33	0	1749788..1750654	+	288	15603412	hslO	PM1547	-	Hsp33-like chaperonin
1549	 41.06	0	1750828..1751655	+	275	15603413	cysQ	PM1548	-	CysQ
1550	 41.58	0	1751723..1753213	+	496	15603414	zwf	PM1549	-	glucose-6-phosphate 1-dehydrogenase
1551	 44.49	+1	1753276..1753974	+	232	161723308	devB	PM1550	-	6-phosphogluconolactonase
1552	 41.54	0	1754140..1754748	+	202	15603416	-	PM1551	-	hypothetical protein
1553	 34.22	-1	1754932..1755270	+	112	15603417	-	PM1552	-	hypothetical protein
1554	 41.22	0	1755534..1755926	+	130	15603418	-	PM1553	-	hypothetical protein
1555	 43.85	0	1756014..1757468	+	484	15603419	gnd	PM1554	-	6-phosphogluconate dehydrogenase
1556	 38.13	0	1757681..1758493	+	270	15603420	-	PM1555	-	hypothetical protein
1557	 40.90	0	1758601..1759287	+	228	15603421	comF	PM1556	-	ComF
1558	 41.54	0	1759385..1759969	+	194	15603422	orfG	PM1557	-	putative DNA uptake protein
1559	 35.20	-1	1760027..1760668	-	213	15603423	tfoX	PM1558	-	TfoX
1560	 37.82	0	1767075..1767587	+	170	15603424	def	PM1559	-	peptide deformylase
1561	 42.66	0	1767650..1768603	+	317	15603425	fmt	PM1560	-	methionyl-tRNA formyltransferase
1562	 41.39	0	1768603..1769943	+	446	15603426	sun	PM1561	-	hypothetical protein
1563	 40.52	0	1769958..1770764	+	268	15603427	-	PM1562	-	hypothetical protein
1564	 39.80	0	1770764..1772140	+	458	15603428	trkA	PM1563	-	potassium transporter peripheral membrane component
1565	 38.81	0	1772223..1772624	+	133	15603429	mscL	PM1564	-	MscL
1566	 38.97	0	1772759..1773184	+	141	15603430	-	PM1565	-	hypothetical protein
1567	 38.80	0	1773304..1774017	+	237	15603431	-	PM1566	-	hypothetical protein
1568	 42.67	0	1774081..1774680	+	199	15603432	fkpA	PM1567	-	FkpA
1569	 30.99	-2	1774734..1774946	-	70	15603433	-	PM1568	-	hypothetical protein
1570	 40.13	0	1775043..1775513	-	156	15603434	yfkJ	PM1569	-	YfkJ
1571	 41.59	0	1775628..1779527	-	1299	15603435	hsf_2	PM1570	-	Hsf
1572	 41.39	0	1779706..1781046	-	446	15603436	-	PM1571	-	hypothetical protein
1573	 44.40	+1	1781242..1782000	-	252	15603437	udp	PM1572	-	uridine phosphorylase
1574	 37.09	-1	1782023..1782475	-	150	15603438	asnC	PM1573	-	DNA-binding transcriptional regulator AsnC
1575	 39.88	0	1782633..1783625	+	330	15603439	asnA	PM1574	-	asparagine synthetase AsnA
1576	 44.30	+1	1783808..1785238	-	476	15603440	murP	PM1575	-	N-acetylmuramic acid phosphotransfer permease
1577	 44.59	+1	1785250..1786155	-	301	15603441	murQ	PM1576	-	N-acetylmuramic acid-6-phosphate etherase
1578	 40.42	0	1786275..1787135	+	286	15603442	-	PM1577	-	hypothetical protein
1579	 42.25	0	1787318..1788337	+	339	15603443	-	PM1578	-	hypothetical protein
1580	 45.21	+1	1788347..1788826	+	159	15603444	-	PM1579	-	hypothetical protein
1581	 45.18	+1	1788816..1790798	+	660	15603445	-	PM1580	-	hypothetical protein
1582	 43.20	0	1790900..1791517	-	205	15603446	-	PM1581	-	hypothetical protein
1583	 42.90	0	1791589..1793511	+	640	15603447	-	PM1582	-	hypothetical protein
1584	 41.79	0	1793560..1794174	-	204	15603448	-	PM1583	-	hypothetical protein
1585	 41.49	0	1794303..1795148	-	281	15603449	rpoH	PM1584	-	RNA polymerase factor sigma-32
1586	 41.01	0	1795379..1796785	-	468	15603450	-	PM1585	-	hypothetical protein
1587	 41.81	0	1796968..1798512	-	514	15603451	-	PM1586	-	hypothetical protein
1588	 44.17	+1	1798701..1799660	-	319	15603452	tehA	PM1587	-	potassium-tellurite ethidium and proflavin transporter
1589	 43.59	0	1799657..1799968	-	103	15603453	-	PM1588	-	hypothetical protein
1590	 42.98	0	1799981..1801006	-	341	15603454	murB	PM1589	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1591	 39.90	0	1801010..1801633	-	207	15603455	-	PM1590	-	hypothetical protein
1592	 42.36	0	1801630..1803336	-	568	15603456	narQ	PM1591	-	nitrate/nitrite sensor protein NarQ
1593	 43.52	0	1803532..1804071	+	179	15603457	napF	PM1592	-	hypothetical protein
1594	 42.75	0	1804072..1804347	+	91	15603458	napD	PM1593	-	NapD
1595	 43.99	0	1804388..1806874	+	828	15603459	napA	PM1594	-	nitrate reductase
1596	 48.21	+2	1806938..1807690	+	250	15603460	napG	PM1595	-	quinol dehydrogenase periplasmic component
1597	 44.06	+1	1807690..1808565	+	291	15603461	napH	PM1596	-	quinol dehydrogenase membrane component
1598	 42.96	0	1808571..1808996	+	141	15603462	napB	PM1597	-	NapB
1599	 40.40	0	1809012..1809605	+	197	15603463	napC	PM1598	-	NapC
1600	 43.32	0	1809760..1810881	+	373	15603464	dprA	PM1599	-	hypothetical protein
1601	 41.63	0	1810987..1813347	-	786	15603465	-	PM1600	-	organic solvent tolerance protein
1602	 40.58	0	1813399..1813950	-	183	15603466	tagI	PM1601	-	TagI
1603	 41.30	0	1814108..1815061	+	317	15603467	tal_1	PM1602	-	transaldolase B
1604	 26.57	-2	1815252..1816079	-	275	15603468	-	PM1603	-	hypothetical protein
1605	 43.05	0	1816100..1816552	-	150	15603469	-	PM1604	-	hypothetical protein
1606	 42.01	0	1816565..1817290	-	241	15603470	-	PM1605	-	hypothetical protein
1607	 43.59	0	1817479..1818726	+	415	15603471	idp	PM1606	-	Idp
1608	 34.77	-1	1818883..1819161	+	92	15603472	ftsB	PM1607	-	cell division protein FtsB
1609	 45.19	+1	1819161..1819877	+	238	15603473	ispD	PM1608	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1610	 46.96	+1	1819886..1820362	+	158	15603474	-	PM1609	-	hypothetical protein
1611	 45.83	+1	1820362..1821369	+	335	15603475	truD	PM1610	-	tRNA pseudouridine synthase D
1612	 45.47	+1	1821399..1821917	+	172	15603476	-	PM1611	-	hypothetical protein
1613	 46.56	+1	1821989..1822729	+	246	15603477	surE	PM1612	-	stationary phase survival protein SurE
1614	 41.32	0	1822769..1823344	+	191	15603478	lppB	PM1613	-	LppB
1615	 45.30	+1	1823557..1824960	+	467	15603479	-	PM1614	-	hypothetical protein
1616	 42.76	0	1825027..1825461	-	144	15603480	-	PM1615	-	D-tyrosyl-tRNA deacylase
1617	 39.54	0	1825458..1826408	-	316	15603481	rbn	PM1616	-	ribonuclease BN
1618	 41.14	0	1826405..1826878	-	157	15603482	-	PM1617	-	hypothetical protein
1619	 39.65	0	1826972..1827652	-	226	15603483	-	PM1618	-	hypothetical protein
1620	 41.14	0	1827663..1828379	+	238	15603484	dod_2	PM1619	-	ribulose-phosphate 3-epimerase
1621	 42.52	0	1828408..1829082	+	224	15603485	gph	PM1620	-	phosphoglycolate phosphatase
1622	 44.11	+1	1829092..1830093	+	333	15603486	trpS	PM1621	-	tryptophanyl-tRNA synthetase
1623	 38.36	0	1830252..1832798	+	848	15603487	hasR	PM1622	-	HasR
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.