IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1395	 38.60	0	1587848..1587961	-	37	15603259	rpmJ	PM1394	-	50S ribosomal protein L36
1396	 39.59	0	1587990..1589315	-	441	15603260	secY	PM1395	-	preprotein translocase subunit SecY
1397	 42.30	0	1589323..1589757	-	144	15603261	rplO	PM1396	-	50S ribosomal protein L15
1398	 39.44	0	1589762..1589941	-	59	15603262	rpmD	PM1397	-	50S ribosomal protein L30
1399	 43.51	0	1589948..1590448	-	166	15603263	rpsE	PM1398	-	30S ribosomal protein S5
1400	 44.07	+1	1590464..1590817	-	117	15603264	rplR	PM1399	-	50S ribosomal protein L18
1401	 42.88	0	1590831..1591364	-	177	15603265	rplF	PM1400	-	50S ribosomal protein L6
1402	 41.73	0	1591380..1591772	-	130	15603266	rpsH	PM1401	-	30S ribosomal protein S8
1403	 45.42	+1	1591809..1592114	-	101	15603267	rpsN	PM1402	-	30S ribosomal protein S14
1404	 41.11	0	1592126..1592665	-	179	15603268	rplE	PM1403	-	50S ribosomal protein L5
1405	 36.54	-1	1592683..1592994	-	103	15603269	rplX	PM1404	-	50S ribosomal protein L24
1406	 43.55	0	1593009..1593380	-	123	15603270	rplN	PM1405	-	50S ribosomal protein L14
1407	 37.98	0	1593617..1593874	-	85	15603271	rpsQ	PM1406	-	30S ribosomal protein S17
1408	 41.67	0	1593874..1594065	-	63	15603272	rpmC	PM1407	-	50S ribosomal protein L29
1409	 43.80	0	1594065..1594475	-	136	15603273	rplP	PM1408	-	50S ribosomal protein L16
1410	 43.50	0	1594489..1595196	-	235	15603274	rpsC	PM1409	-	30S ribosomal protein S3
1411	 40.84	0	1595214..1595546	-	110	15603275	rplV	PM1410	-	50S ribosomal protein L22
1412	 44.93	+1	1595557..1595832	-	91	15603276	rpsS	PM1411	-	30S ribosomal protein S19
1413	 43.67	0	1595858..1596679	-	273	15603277	rplB	PM1412	-	50S ribosomal protein L2
1414	 38.94	0	1596699..1597001	-	100	15603278	rplW	PM1413	-	50S ribosomal protein L23
1415	 41.63	0	1596998..1597600	-	200	15603279	rplD	PM1414	-	50S ribosomal protein L4
1416	 40.48	0	1597615..1598244	-	209	15603280	rplC	PM1415	-	50S ribosomal protein L3
1417	 42.95	0	1598261..1598572	-	103	15603281	rpsJ	PM1416	-	30S ribosomal protein S10
1418	 47.56	+2	1598907..1600277	+	456	15603282	-	PM1417	-	hypothetical protein
1419	 46.14	+1	1600274..1601257	+	327	15603283	-	PM1418	-	tRNA-dihydrouridine synthase A
1420	 41.73	0	1601378..1602604	-	408	15603284	tnaB	PM1419	-	TnaB
1421	 42.23	0	1602677..1604092	-	471	15603285	tnaA	PM1420	-	tryptophanase
1422	 40.87	0	1604667..1604918	+	83	15603286	-	PM1421	-	oxaloacetate decarboxylase subunit gamma
1423	 44.72	+1	1604938..1606746	+	602	15603287	-	PM1422	-	pyruvate carboxylase subunit B
1424	 45.82	+1	1606757..1608061	+	434	15603288	-	PM1423	-	hypothetical protein
1425	 43.17	0	1608184..1609434	-	416	15603289	lysA	PM1424	-	hypothetical protein
1426	 37.54	0	1609686..1609994	+	102	15603290	cyaY	PM1425	-	frataxin-like protein
1427	 39.96	0	1609960..1610880	+	306	15603291	-	PM1426	-	phospholipase A
1428	 42.13	0	1610870..1612768	+	632	15603292	recQ	PM1427	-	RecQ
1429	 39.83	0	1612867..1615284	-	805	15603293	-	PM1428	-	hypothetical protein
1430	 43.30	0	1615496..1616308	-	270	15603294	aroE	PM1429	-	shikimate 5-dehydrogenase
1431	 45.03	+1	1616386..1617180	-	264	15603295	cysE	PM1430	-	serine acetyltransferase
1432	 44.38	+1	1617208..1618221	-	337	15603296	gpsA	PM1431	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1433	 38.01	0	1618327..1618839	-	170	15603297	secB	PM1432	-	preprotein translocase subunit SecB
1434	 36.96	-1	1618857..1619297	-	146	15603298	-	PM1433	-	hypothetical protein
1435	 44.06	+1	1619509..1620822	+	437	15603299	dcuB	PM1434	-	anaerobic C4-dicarboxylate transporter
1436	 44.00	0	1620927..1622426	-	499	15603300	-	PM1435	-	hypothetical protein
1437	 45.99	+1	1622603..1622926	+	107	15603301	glpE	PM1436	-	GlpE
1438	 43.91	0	1622923..1623234	-	103	15603302	-	PM1437	-	hypothetical protein
1439	 42.58	0	1623292..1624167	+	291	15603303	glpG	PM1438	-	hypothetical protein
1440	 41.50	0	1624227..1624985	+	252	15603304	glpR	PM1439	-	hypothetical protein
1441	 41.14	0	1625037..1626317	-	426	15603305	glpC	PM1440	-	sn-glycerol-3-phosphate dehydrogenase subunit C
1442	 44.08	+1	1626314..1627606	-	430	15603306	glpB	PM1441	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
1443	 46.81	+1	1627590..1629281	-	563	15603307	glpA	PM1442	-	sn-glycerol-3-phosphate dehydrogenase subunit A
1444	 43.50	0	1629582..1631027	+	481	15603308	glpT	PM1443	-	GlpT
1445	 39.83	0	1631176..1632252	+	358	15603309	glpQ	PM1444	-	glycerophosphodiester phosphodiesterase
1446	 48.04	+2	1632416..1633204	+	262	15603310	glpF	PM1445	-	hypothetical protein
1447	 46.12	+1	1633236..1634744	+	502	15603311	glpK	PM1446	-	glycerol kinase
1448	 42.54	0	1634815..1635129	-	104	15603312	tex	PM1447	-	hypothetical protein
1449	 46.46	+1	1635139..1637514	-	791	15603313	-	PM1448	-	hypothetical protein
1450	 47.15	+1	1637518..1638060	-	180	15603314	-	PM1449	-	hypothetical protein
1451	 44.65	+1	1638200..1638676	+	158	15603315	greB	PM1450	-	transcription elongation factor GreB
1452	 38.40	0	1638710..1639519	-	269	15603316	xynC	PM1451	-	XynC
1453	 40.21	0	1639725..1640291	-	188	15603317	-	PM1452	-	hypothetical protein
1454	 47.15	+1	1640533..1643160	+	875	15603318	adh2	PM1453	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
1455	 42.78	0	1643261..1644319	-	352	15603319	msmK	PM1454	-	MsmK
1456	 41.71	0	1644341..1646035	-	564	15603320	afuB_2	PM1455	-	AfuB
1457	 41.05	0	1646038..1647126	-	362	15603321	-	PM1456	-	hypothetical protein
1458	 40.81	0	1647141..1648130	-	329	15603322	-	PM1457	-	hypothetical protein
1459	 41.18	0	1648511..1649746	+	411	15603323	pgtC	PM1458	-	PgtC
1460	 38.12	0	1649743..1651725	+	660	15603324	pgtB	PM1459	-	PgtB
1461	 39.39	0	1651718..1652971	+	417	15603325	-	PM1460	-	hypothetical protein
1462	 44.31	+1	1653139..1654149	+	336	15603326	-	PM1461	-	hypothetical protein
1463	 40.76	0	1654425..1654949	+	174	15603327	-	PM1462	-	hypothetical protein
1464	 47.55	+2	1655069..1655659	-	196	15603328	trpG_2	PM1463	-	para-aminobenzoate synthase component II
1465	 44.51	+1	1655767..1656741	+	324	15603329	pabB	PM1464	-	para-aminobenzoate synthase component I
1466	 41.75	0	1656745..1657326	+	193	15603330	-	PM1465	-	hypothetical protein
1467	 44.36	+1	1657389..1657778	+	129	15603331	-	PM1466	-	hypothetical protein
1468	 39.71	0	1657918..1658262	+	114	15603332	-	PM1467	-	hypothetical protein
1469	 41.69	0	1658315..1660336	-	673	15603333	-	PM1468	-	hypothetical protein
1470	 39.14	0	1660591..1662330	+	579	15603334	-	PM1469	-	hypothetical protein
1471	 43.08	0	1662422..1662934	-	170	15603335	-	PM1470	-	hypothetical protein
1472	 36.67	-1	1662969..1663328	-	119	15603336	-	PM1471	-	hypothetical protein
1473	 41.62	0	1663476..1664018	+	180	15603337	-	PM1472	-	hypothetical protein
1474	 41.41	0	1664147..1665805	-	552	15603338	-	PM1473	-	hypothetical protein
1475	 41.04	0	1665798..1667483	-	561	15603339	cydD	PM1474	-	CydD
1476	 38.21	0	1667671..1668531	-	286	15603340	-	PM1475	-	hypothetical protein
1477	 41.76	0	1668610..1671030	-	806	15603341	gyrB	PM1476	-	DNA gyrase subunit B
1478	 41.56	0	1671336..1672685	+	449	15603342	-	PM1477	-	hypothetical protein
1479	 36.09	-1	1672698..1673060	+	120	15603343	-	PM1478	-	hypothetical protein
1480	 38.16	0	1673023..1673955	+	310	15603344	-	PM1479	-	hypothetical protein
1481	 41.52	0	1673974..1674498	+	174	15603345	-	PM1480	-	hypothetical protein
1482	 29.17	-2	1674804..1675091	+	95	15603346	-	PM1481	-	hypothetical protein
1483	 42.31	0	1675172..1676185	-	337	15603347	glpX	PM1482	-	fructose 1,6-bisphosphatase II
1484	 30.59	-2	1676401..1676619	+	72	15603348	-	PM1483	-	hypothetical protein
1485	 38.29	0	1676674..1677117	+	147	15603349	mioC	PM1484	-	flavodoxin
1486	 40.26	0	1677605..1679494	+	629	15603350	gidA	PM1485	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1487	 34.91	-1	1679494..1680126	+	210	15603351	gidB	PM1486	-	glucose-inhibited division protein B
1488	 27.21	-2	1680264..1680671	+	135	15603352	-	PM1487	-	F0F1 ATP synthase subunit I
1489	 35.72	-1	1680682..1681476	+	264	15603353	atpB	PM1488	-	F0F1 ATP synthase subunit A
1490	 36.86	-1	1681533..1681787	+	84	15603354	atpE	PM1489	-	F0F1 ATP synthase subunit C
1491	 38.85	0	1681867..1682337	+	156	15603355	atpF	PM1490	-	F0F1 ATP synthase subunit B
1492	 36.33	-1	1682351..1682884	+	177	15603356	atpH	PM1491	-	F0F1 ATP synthase subunit delta
1493	 39.95	0	1682897..1684438	+	513	15603357	atpA	PM1492	-	F0F1 ATP synthase subunit alpha
1494	 35.40	-1	1684465..1685334	+	289	15603358	atpG	PM1493	-	F0F1 ATP synthase subunit gamma
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.