IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1357	 42.56	0	1544478..1546580	+	700	15603221	fusA	PM1356	-	elongation factor G
1358	 44.64	+1	1546641..1547825	+	394	15603222	tuf	PM1357	-	elongation factor Tu
1359	 40.64	0	1547947..1549287	-	446	15603223	-	PM1358	-	hypothetical protein
1360	 42.26	0	1549352..1550818	-	488	15603224	gntP_2	PM1359	-	GntP
1361	 41.67	0	1550830..1551777	-	315	15603225	-	PM1360	-	hypothetical protein
1362	 41.56	0	1551916..1553715	-	599	15603226	kmt1	PM1361	-	Kmt1
1363	 41.04	0	1553717..1554391	-	224	15603227	-	PM1362	-	hypothetical protein
1364	 40.87	0	1554407..1555189	-	260	15603228	-	PM1363	-	hypothetical protein
1365	 44.87	+1	1555191..1555823	-	210	15603229	-	PM1364	-	putative aldolase
1366	 44.20	+1	1555820..1557061	-	413	15603230	-	PM1365	-	hypothetical protein
1367	 46.47	+1	1557064..1557969	-	301	15603231	-	PM1366	-	hypothetical protein
1368	 39.37	0	1558184..1558945	+	253	15603232	-	PM1367	-	hypothetical protein
1369	 42.25	0	1559003..1560505	-	500	15603233	pepD	PM1368	-	hypothetical protein
1370	 44.81	+1	1560622..1561083	+	153	15603234	gpt	PM1369	-	xanthine-guanine phosphoribosyltransferase
1371	 43.76	0	1561161..1562876	-	571	15603235	proS	PM1370	-	prolyl-tRNA synthetase
1372	 44.42	+1	1563119..1564588	-	489	15603236	-	PM1371	-	hypothetical protein
1373	 41.69	0	1564606..1565586	-	326	15603237	-	PM1372	-	hypothetical protein
1374	 40.11	0	1565573..1566457	-	294	15603238	fbaA	PM1373	-	hypothetical protein
1375	 40.06	0	1566459..1567142	-	227	15603239	-	PM1374	-	hypothetical protein
1376	 46.49	+1	1567196..1568107	-	303	15603240	-	PM1375	-	fructokinase
1377	 40.98	0	1568196..1568927	+	243	15603241	-	PM1376	-	hypothetical protein
1378	 43.44	0	1568990..1569919	-	309	15603242	rbsB_2	PM1377	-	hypothetical protein
1379	 44.65	+1	1569947..1570918	-	323	15603243	-	PM1378	-	hypothetical protein
1380	 44.74	+1	1570957..1572516	-	519	15603244	-	PM1379	-	hypothetical protein
1381	 40.17	0	1572958..1575546	+	862	15603245	cvgSY	PM1380	-	CvgSY
1382	 43.21	0	1575615..1576535	-	306	15603246	speE	PM1381	-	agmatinase
1383	 41.96	0	1576597..1578531	-	644	15603247	speA	PM1382	-	arginine decarboxylase
1384	 40.90	0	1578690..1579985	-	431	15603248	ordL	PM1383	-	OrdL
1385	 36.43	-1	1580293..1581228	+	311	15603249	potD_3	PM1384	-	PotD
1386	 42.02	0	1581294..1581938	-	214	15603250	ribB	PM1385	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1387	 35.69	-1	1582229..1582567	-	112	15603251	-	PM1386	-	hypothetical protein
1388	 36.91	-1	1582621..1583907	+	428	15603252	nadR	PM1387	-	nicotinamide-nucleotide adenylyltransferase
1389	 38.77	0	1583904..1584584	+	226	15603253	-	PM1388	-	hypothetical protein
1390	 43.08	0	1584842..1585231	-	129	15603254	rplQ	PM1389	-	50S ribosomal protein L17
1391	 40.61	0	1585273..1586262	-	329	15603255	rpoA	PM1390	-	DNA-directed RNA polymerase subunit alpha
1392	 39.13	0	1586295..1586915	-	206	15603256	rpsD	PM1391	-	30S ribosomal protein S4
1393	 46.15	+1	1586945..1587334	-	129	15603257	rpS11	PM1392	-	30S ribosomal protein S11
1394	 43.42	0	1587351..1587707	-	118	15603258	rpsM	PM1393	-	30S ribosomal protein S13
1395	 38.60	0	1587848..1587961	-	37	15603259	rpmJ	PM1394	-	50S ribosomal protein L36
1396	 39.59	0	1587990..1589315	-	441	15603260	secY	PM1395	-	preprotein translocase subunit SecY
1397	 42.30	0	1589323..1589757	-	144	15603261	rplO	PM1396	-	50S ribosomal protein L15
1398	 39.44	0	1589762..1589941	-	59	15603262	rpmD	PM1397	-	50S ribosomal protein L30
1399	 43.51	0	1589948..1590448	-	166	15603263	rpsE	PM1398	-	30S ribosomal protein S5
1400	 44.07	+1	1590464..1590817	-	117	15603264	rplR	PM1399	-	50S ribosomal protein L18
1401	 42.88	0	1590831..1591364	-	177	15603265	rplF	PM1400	-	50S ribosomal protein L6
1402	 41.73	0	1591380..1591772	-	130	15603266	rpsH	PM1401	-	30S ribosomal protein S8
1403	 45.42	+1	1591809..1592114	-	101	15603267	rpsN	PM1402	-	30S ribosomal protein S14
1404	 41.11	0	1592126..1592665	-	179	15603268	rplE	PM1403	-	50S ribosomal protein L5
1405	 36.54	-1	1592683..1592994	-	103	15603269	rplX	PM1404	-	50S ribosomal protein L24
1406	 43.55	0	1593009..1593380	-	123	15603270	rplN	PM1405	-	50S ribosomal protein L14
1407	 37.98	0	1593617..1593874	-	85	15603271	rpsQ	PM1406	-	30S ribosomal protein S17
1408	 41.67	0	1593874..1594065	-	63	15603272	rpmC	PM1407	-	50S ribosomal protein L29
1409	 43.80	0	1594065..1594475	-	136	15603273	rplP	PM1408	-	50S ribosomal protein L16
1410	 43.50	0	1594489..1595196	-	235	15603274	rpsC	PM1409	-	30S ribosomal protein S3
1411	 40.84	0	1595214..1595546	-	110	15603275	rplV	PM1410	-	50S ribosomal protein L22
1412	 44.93	+1	1595557..1595832	-	91	15603276	rpsS	PM1411	-	30S ribosomal protein S19
1413	 43.67	0	1595858..1596679	-	273	15603277	rplB	PM1412	-	50S ribosomal protein L2
1414	 38.94	0	1596699..1597001	-	100	15603278	rplW	PM1413	-	50S ribosomal protein L23
1415	 41.63	0	1596998..1597600	-	200	15603279	rplD	PM1414	-	50S ribosomal protein L4
1416	 40.48	0	1597615..1598244	-	209	15603280	rplC	PM1415	-	50S ribosomal protein L3
1417	 42.95	0	1598261..1598572	-	103	15603281	rpsJ	PM1416	-	30S ribosomal protein S10
1418	 47.56	+2	1598907..1600277	+	456	15603282	-	PM1417	-	hypothetical protein
1419	 46.14	+1	1600274..1601257	+	327	15603283	-	PM1418	-	tRNA-dihydrouridine synthase A
1420	 41.73	0	1601378..1602604	-	408	15603284	tnaB	PM1419	-	TnaB
1421	 42.23	0	1602677..1604092	-	471	15603285	tnaA	PM1420	-	tryptophanase
1422	 40.87	0	1604667..1604918	+	83	15603286	-	PM1421	-	oxaloacetate decarboxylase subunit gamma
1423	 44.72	+1	1604938..1606746	+	602	15603287	-	PM1422	-	pyruvate carboxylase subunit B
1424	 45.82	+1	1606757..1608061	+	434	15603288	-	PM1423	-	hypothetical protein
1425	 43.17	0	1608184..1609434	-	416	15603289	lysA	PM1424	-	hypothetical protein
1426	 37.54	0	1609686..1609994	+	102	15603290	cyaY	PM1425	-	frataxin-like protein
1427	 39.96	0	1609960..1610880	+	306	15603291	-	PM1426	-	phospholipase A
1428	 42.13	0	1610870..1612768	+	632	15603292	recQ	PM1427	-	RecQ
1429	 39.83	0	1612867..1615284	-	805	15603293	-	PM1428	-	hypothetical protein
1430	 43.30	0	1615496..1616308	-	270	15603294	aroE	PM1429	-	shikimate 5-dehydrogenase
1431	 45.03	+1	1616386..1617180	-	264	15603295	cysE	PM1430	-	serine acetyltransferase
1432	 44.38	+1	1617208..1618221	-	337	15603296	gpsA	PM1431	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1433	 38.01	0	1618327..1618839	-	170	15603297	secB	PM1432	-	preprotein translocase subunit SecB
1434	 36.96	-1	1618857..1619297	-	146	15603298	-	PM1433	-	hypothetical protein
1435	 44.06	+1	1619509..1620822	+	437	15603299	dcuB	PM1434	-	anaerobic C4-dicarboxylate transporter
1436	 44.00	0	1620927..1622426	-	499	15603300	-	PM1435	-	hypothetical protein
1437	 45.99	+1	1622603..1622926	+	107	15603301	glpE	PM1436	-	GlpE
1438	 43.91	0	1622923..1623234	-	103	15603302	-	PM1437	-	hypothetical protein
1439	 42.58	0	1623292..1624167	+	291	15603303	glpG	PM1438	-	hypothetical protein
1440	 41.50	0	1624227..1624985	+	252	15603304	glpR	PM1439	-	hypothetical protein
1441	 41.14	0	1625037..1626317	-	426	15603305	glpC	PM1440	-	sn-glycerol-3-phosphate dehydrogenase subunit C
1442	 44.08	+1	1626314..1627606	-	430	15603306	glpB	PM1441	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
1443	 46.81	+1	1627590..1629281	-	563	15603307	glpA	PM1442	-	sn-glycerol-3-phosphate dehydrogenase subunit A
1444	 43.50	0	1629582..1631027	+	481	15603308	glpT	PM1443	-	GlpT
1445	 39.83	0	1631176..1632252	+	358	15603309	glpQ	PM1444	-	glycerophosphodiester phosphodiesterase
1446	 48.04	+2	1632416..1633204	+	262	15603310	glpF	PM1445	-	hypothetical protein
1447	 46.12	+1	1633236..1634744	+	502	15603311	glpK	PM1446	-	glycerol kinase
1448	 42.54	0	1634815..1635129	-	104	15603312	tex	PM1447	-	hypothetical protein
1449	 46.46	+1	1635139..1637514	-	791	15603313	-	PM1448	-	hypothetical protein
1450	 47.15	+1	1637518..1638060	-	180	15603314	-	PM1449	-	hypothetical protein
1451	 44.65	+1	1638200..1638676	+	158	15603315	greB	PM1450	-	transcription elongation factor GreB
1452	 38.40	0	1638710..1639519	-	269	15603316	xynC	PM1451	-	XynC
1453	 40.21	0	1639725..1640291	-	188	15603317	-	PM1452	-	hypothetical protein
1454	 47.15	+1	1640533..1643160	+	875	15603318	adh2	PM1453	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
1455	 42.78	0	1643261..1644319	-	352	15603319	msmK	PM1454	-	MsmK
1456	 41.71	0	1644341..1646035	-	564	15603320	afuB_2	PM1455	-	AfuB
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.