IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
82	 37.86	0	109062..109658	-	198	15601947	-	PM0082	-	dinucleoside polyphosphate hydrolase
83	 39.15	0	110243..110809	-	188	15601948	ampD	PM0083	-	N-acetyl-anhydromuranmyl-L-alanine amidase
84	 38.85	0	110969..111403	+	144	15601949	-	PM0084	-	hypothetical protein
85	 40.91	0	111403..112788	+	461	15601950	hofB	PM0085	-	HofB
86	 38.23	0	112857..113999	+	380	15601951	hofC	PM0086	-	HofC
87	 39.56	0	113999..114721	+	240	15601952	hopD	PM0087	-	HopD
88	 40.42	0	114736..115356	+	206	15601953	coaE	PM0088	-	dephospho-CoA kinase
89	 44.14	+1	115349..115570	+	73	15601954	-	PM0089	-	zinc-binding protein
90	 35.56	-1	115570..115839	+	89	15601955	-	PM0090	-	hypothetical protein
91	 42.50	0	116288..117661	+	457	15601956	-	PM0091	-	hypothetical protein
92	 38.05	0	117906..118223	+	105	15601957	-	PM0092	-	hypothetical protein
93	 40.27	0	118281..119174	-	297	15601958	xerD	PM0093	-	site-specific tyrosine recombinase XerD
94	 41.80	0	119177..120334	-	385	15601959	-	PM0094	-	putative 3-phenylpropionic acid transporter
95	 43.96	0	120334..121161	-	275	15601960	proC	PM0095	-	pyrroline-5-carboxylate reductase
96	 38.28	0	121255..122163	+	302	15601961	rdgC	PM0096	-	recombination associated protein
97	 42.74	0	122316..123059	+	247	15601962	-	PM0097	-	hypothetical protein
98	 42.59	0	123125..124291	-	388	15601963	oapA	PM0098	-	OapA
99	 40.04	0	124385..125398	-	337	15601964	-	PM0099	-	hypothetical protein
100	 40.92	0	125434..126000	+	188	15601965	efp	PM0100	-	elongation factor P
101	 41.62	0	126049..126555	-	168	15601966	-	PM0101	-	hypothetical protein
102	 41.25	0	126559..127278	-	239	15601967	-	PM0102	-	UDP-2,3-diacylglucosamine hydrolase
103	 41.05	0	127389..128114	+	241	15601968	plsC	PM0103	-	hypothetical protein
104	 41.44	0	128118..129524	+	468	15601969	sufI	PM0104	-	hypothetical protein
105	 42.92	0	130030..131562	-	510	15601970	engA	PM0105	-	GTP-binding protein EngA
106	 43.31	0	132010..132771	-	253	15601971	dnaQ	PM0106	-	DNA polymerase III subunit epsilon
107	 41.72	0	132840..133304	+	154	15601972	rnhA	PM0107	-	ribonuclease H
108	 41.40	0	133368..134111	-	247	15601973	-	PM0108	-	hypothetical protein
109	 29.08	-2	134225..134836	-	203	15601974	-	PM0109	-	hypothetical protein
110	 27.63	-2	134838..135608	-	256	15601975	-	PM0110	-	hypothetical protein
111	 38.98	0	135786..136352	-	188	15601976	-	PM0111	-	hypothetical protein
112	 43.30	0	136386..137087	-	233	15601977	-	PM0112	-	hypothetical protein
113	 42.57	0	137444..139891	+	815	15601978	thrA	PM0113	-	bifunctional aspartokinase I/homeserine dehydrogenase I
114	 43.39	0	139915..140859	+	314	15601979	thrB	PM0114	-	homoserine kinase
115	 42.98	0	140879..142153	+	424	15601980	thrC	PM0115	-	threonine synthase
116	 42.74	0	142266..142988	+	240	15601981	-	PM0116	-	hypothetical protein
117	 44.37	+1	143173..144432	+	419	15601982	hflK	PM0117	-	HflK
118	 42.23	0	144432..145319	+	295	15601983	hflC	PM0118	-	hypothetical protein
119	 39.41	0	145376..145918	-	180	15601984	-	PM0119	-	hypothetical protein
120	 43.44	0	146013..147368	+	451	15601985	pmbA	PM0120	-	hypothetical protein
121	 39.81	0	147603..148142	+	179	15601986	hpt	PM0121	-	hypoxanthine-guanine phosphoribosyltransferase
122	 37.78	0	148175..148759	+	194	15601987	gmhA	PM0122	-	phosphoheptose isomerase
123	 40.03	0	148935..149666	+	243	15601988	artP	PM0123	-	arginine transporter ATP-binding subunit
124	 37.76	0	149683..150405	+	240	15601989	artI	PM0124	-	hypothetical protein
125	 41.52	0	150412..151083	+	223	15601990	artQ	PM0125	-	arginine transporter permease subunit ArtQ
126	 38.30	0	151083..151766	+	227	15601991	artM	PM0126	-	arginine transporter permease subunit ArtM
127	 39.13	0	151825..152100	-	91	15601992	-	PM0127	-	hypothetical protein
128	 41.09	0	152146..152919	-	257	15601993	fecE	PM0128	-	iron-dicitrate transporter ATP-binding subunit
129	 45.42	+1	152919..153911	-	330	15601994	fecD	PM0129	-	iron-dicitrate transporter subunit FecD
130	 45.53	+1	153911..154894	-	327	15601995	fecC	PM0130	-	iron-dicitrate transporter permease subunit
131	 41.36	0	154894..155790	-	298	15601996	fecB	PM0131	-	iron-dicitrate transporter substrate-binding subunit
132	 39.61	0	156093..157637	+	514	15601997	-	PM0132	-	hypothetical protein
133	 41.61	0	157920..158378	+	152	15601998	-	PM0133	-	cell division protein MraZ
134	 41.72	0	158500..159465	+	321	15601999	mraW	PM0134	-	S-adenosyl-methyltransferase MraW
135	 37.69	0	159462..159782	+	106	15602000	ftsL	PM0135	-	hypothetical protein
136	 40.53	0	159800..161605	+	601	15602001	ftsI	PM0136	-	hypothetical protein
137	 44.65	+1	161615..163099	+	494	15602002	murE	PM0137	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
138	 41.72	0	163092..164474	+	460	15602003	murF	PM0138	-	hypothetical protein
139	 43.12	0	164468..165550	+	360	15602004	mraY	PM0139	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
140	 42.99	0	165569..166873	+	434	15602005	murD	PM0140	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
141	 40.72	0	166885..168075	+	396	15602006	ftsW	PM0141	-	hypothetical protein
142	 44.69	+1	168153..169217	+	354	15602007	murG	PM0142	-	N-acetylglucosaminyl transferase
143	 44.17	+1	169228..170676	+	482	15602008	murC	PM0143	-	UDP-N-acetylmuramate--L-alanine ligase
144	 41.94	0	170685..171614	+	309	15602009	ddl	PM0144	-	D-alanine--D-alanine ligase
145	 37.84	0	171611..172387	+	258	15602010	ftsQ	PM0145	-	hypothetical protein
146	 38.95	0	172413..173693	+	426	15602011	ftsA	PM0146	-	hypothetical protein
147	 44.06	+1	173778..175082	+	434	15602012	ftsZ	PM0147	-	cell division protein FtsZ
148	 40.74	0	175128..176045	+	305	15602013	lpxC	PM0148	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
149	 42.62	0	176199..177350	+	383	15602014	-	PM0149	-	hypothetical protein
150	 39.09	0	177405..178568	+	387	15602015	pheA	PM0150	-	hypothetical protein
151	 42.01	0	178583..179596	-	337	15602016	rbsR	PM0151	-	RbsR
152	 45.28	+1	179679..180599	-	306	15602017	rbsK	PM0152	-	ribokinase
153	 44.14	+1	180683..181570	-	295	15602018	rbsB_1	PM0153	-	D-ribose transporter subunit RbsB
154	 43.65	0	181598..182566	-	322	15602019	rbsC	PM0154	-	ribose ABC transporter permease protein
155	 41.75	0	182583..184079	-	498	15602020	rbsA_1	PM0155	-	D-ribose transporter ATP binding protein
156	 40.71	0	184091..184510	-	139	15602021	rbsD	PM0156	-	D-ribose pyranase
157	 44.29	+1	184704..184913	+	69	15602022	-	PM0157	-	hypothetical protein
158	 36.94	-1	184961..185293	-	110	15602023	phnA	PM0158	-	PhnA
159	 42.16	0	185436..185990	+	184	15602024	-	PM0159	-	hypothetical protein
160	 45.04	+1	186183..187421	+	412	15602025	-	PM0160	-	allantoate amidohydrolase
161	 44.03	0	187570..188298	-	242	15602026	-	PM0161	-	hypothetical protein
162	 41.68	0	188466..189878	-	470	15602027	arcD	PM0162	-	hypothetical protein
163	 44.41	+1	189964..191055	-	363	15602028	-	PM0163	-	translation-associated GTPase
164	 40.34	0	191089..191673	-	194	15602029	pth	PM0164	-	peptidyl-tRNA hydrolase
165	 41.27	0	191829..192269	+	146	15602030	-	PM0165	-	hypothetical protein
166	 39.67	0	192256..192555	+	99	15602031	-	PM0166	-	hypothetical protein
167	 41.40	0	192567..193805	+	412	15602032	-	PM0167	-	hypothetical protein
168	 43.50	0	193886..195223	+	445	15602033	xseA	PM0168	-	exodeoxyribonuclease VII large subunit
169	 39.10	0	195225..196091	-	288	15602034	-	PM0169	-	hypothetical protein
170	 37.38	0	196120..196638	-	172	15602035	ptsN	PM0170	-	hypothetical protein
171	 41.18	0	196641..197366	-	241	15602036	-	PM0171	-	hypothetical protein
172	 38.79	0	197375..197887	-	170	15602037	-	PM0172	-	hypothetical protein
173	 36.96	-1	197871..198449	-	192	15602038	-	PM0173	-	hypothetical protein
174	 42.14	0	198680..199474	+	264	15602039	-	PM0174	-	hypothetical protein
175	 45.67	+1	199471..200256	+	261	15602040	-	PM0175	-	hypothetical protein
176	 38.66	0	200294..200800	+	168	15602041	-	PM0176	-	hypothetical protein
177	 38.50	0	200845..201483	+	212	15602042	-	PM0177	-	hypothetical protein
178	 40.74	0	201488..201865	+	125	15602043	-	PM0178	-	hypothetical protein
179	 36.43	-1	201847..202104	+	85	15602044	-	PM0179	-	hypothetical protein
180	 43.58	0	202125..203402	+	425	15602045	murZ	PM0180	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
181	 41.22	0	203457..205433	-	658	15602046	rnb	PM0181	-	exoribonuclease II
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.