IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1251	 43.28	0	1444478..1445995	-	505	15603116	rbsA_2	PM1251	-	RbsA
1252	 41.24	0	1446073..1447059	-	328	15603117	-	PM1252	-	hypothetical protein
1253	 44.26	+1	1447079..1448359	-	426	15603118	-	PM1253	-	hypothetical protein
1254	 38.92	0	1448356..1448838	-	160	15603119	-	PM1254	-	hypothetical protein
1255	 41.93	0	1448835..1449311	-	158	15603120	-	PM1255	-	hypothetical protein
1256	 44.94	+1	1449321..1450319	-	332	15603121	-	PM1256	-	2,3-diketo-L-gulonate reductase
1257	 40.12	0	1450536..1451345	+	269	15603122	-	PM1257	-	hypothetical protein
1258	 38.51	0	1451428..1452006	-	192	15603123	-	PM1258	-	hypothetical protein
1259	 45.75	+1	1452145..1453449	-	434	15603124	-	PM1259	-	hypothetical protein
1260	 47.30	+1	1453439..1454104	-	221	15603125	thiE	PM1260	-	thiamine-phosphate pyrophosphorylase
1261	 46.47	+1	1454114..1454935	-	273	15603126	thiD	PM1261	-	phosphomethylpyrimidine kinase
1262	 47.14	+1	1454928..1455731	-	267	15603127	thiM	PM1262	-	hydroxyethylthiazole kinase
1263	 42.41	0	1456218..1457165	-	315	15603128	-	PM1263	-	hypothetical protein
1264	 43.12	0	1457188..1457841	-	217	15603129	-	PM1264	-	hypothetical protein
1265	 43.79	0	1457914..1458678	-	254	15603130	-	PM1265	-	hypothetical protein
1266	 44.17	+1	1458656..1459384	-	242	15603131	-	PM1266	-	hypothetical protein
1267	 42.97	0	1459656..1461305	-	549	15603132	-	PM1267	-	hypothetical protein
1268	 44.94	+1	1461400..1462002	+	200	15603133	-	PM1268	-	hypothetical protein
1269	 43.55	0	1462020..1462577	+	185	15603134	-	PM1269	-	hypothetical protein
1270	 44.93	+1	1462577..1463128	+	183	15603135	-	PM1270	-	hypothetical protein
1271	 45.56	+1	1463132..1463941	+	269	15603136	aroE	PM1271	-	shikimate 5-dehydrogenase
1272	 46.97	+1	1464005..1465573	-	522	15603137	-	PM1272	-	autoinducer-2 (AI-2) kinase
1273	 42.13	0	1465620..1466585	-	321	15603138	-	PM1273	-	hypothetical protein
1274	 42.29	0	1466838..1468355	+	505	15603139	-	PM1274	-	hypothetical protein
1275	 43.10	0	1468368..1469360	+	330	15603140	-	PM1275	-	hypothetical protein
1276	 41.42	0	1469374..1470375	+	333	15603141	-	PM1276	-	hypothetical protein
1277	 41.89	0	1470405..1471421	+	338	15603142	-	PM1277	-	hypothetical protein
1278	 43.53	0	1471436..1472308	+	290	15603143	-	PM1278	-	aldolase
1279	 39.68	0	1472400..1472714	+	104	15603144	-	PM1279	-	autoinducer-2 (AI-2) modifying protein LsrG
1280	 42.46	0	1472707..1473396	+	229	15603145	dod_1	PM1280	-	ribulose-phosphate 3-epimerase
1281	 39.61	0	1473445..1474320	-	291	15603146	-	PM1281	-	hypothetical protein
1282	 36.76	-1	1474467..1476803	+	778	15603147	-	PM1282	-	hypothetical protein
1283	 44.10	+1	1476863..1477744	-	293	15603148	ilvY	PM1283	-	DNA-binding transcriptional regulator IlvY
1284	 42.89	0	1477997..1479472	+	491	15603149	ilvC	PM1284	-	ketol-acid reductoisomerase
1285	 40.07	0	1479501..1480301	-	266	15603150	mazG	PM1285	-	nucleoside triphosphate pyrophosphohydrolase
1286	 38.26	0	1480487..1480912	+	141	15603151	uspA	PM1286	-	hypothetical protein
1287	 42.51	0	1481152..1483776	+	874	15603152	alaS	PM1287	-	alanyl-tRNA synthetase
1288	 37.04	-1	1483910..1484098	+	62	15603153	csrA	PM1288	-	carbon storage regulator
1289	 40.54	0	1484374..1485261	+	295	15603154	galU	PM1289	-	hypothetical protein
1290	 41.19	0	1485430..1485747	+	105	15603155	metJ	PM1290	-	transcriptional repressor protein MetJ
1291	 42.12	0	1485823..1486539	-	238	15603156	deoD	PM1291	-	purine nucleoside phosphorylase
1292	 42.44	0	1486745..1488007	-	420	15603157	-	PM1292	-	hypothetical protein
1293	 44.54	+1	1488241..1488909	+	222	15603158	-	PM1293	-	hypothetical protein
1294	 42.02	0	1488853..1489899	-	348	15603159	-	PM1294	-	hypothetical protein
1295	 44.58	+1	1490154..1490402	+	82	15603880	rpsP	PM1294a	-	30S ribosomal protein S16
1296	 42.25	0	1490204..1490461	-	85	15603160	-	PM1295	-	hypothetical protein
1297	 39.58	0	1490450..1490977	+	175	161723309	rimM	PM1296	-	16S rRNA-processing protein
1298	 44.85	+1	1491031..1491768	+	245	15603162	trmD	PM1297	-	tRNA (guanine-N(1)-)-methyltransferase
1299	 43.87	0	1491805..1492155	+	116	15603163	rplS	PM1298	-	50S ribosomal protein L19
1300	 42.49	0	1492522..1493820	+	432	15603164	-	PM1299	-	hypothetical protein
1301	 43.26	0	1493841..1495109	+	422	15603165	-	PM1300	-	hypothetical protein
1302	 45.83	+1	1495190..1497037	-	615	15603166	-	PM1301	-	hypothetical protein
1303	 42.91	0	1497108..1498151	-	347	15603167	opsX	PM1302	-	OpsX
1304	 39.14	0	1498243..1498965	+	240	15603168	-	PM1303	-	3-deoxy-D-manno-octulosonic-acid kinase
1305	 41.30	0	1499003..1499479	-	158	15603169	coaD	PM1304	-	phosphopantetheine adenylyltransferase
1306	 42.29	0	1499476..1500759	-	427	15603170	kdtA	PM1305	-	3-deoxy-D-manno-octulosonic-acid transferase
1307	 42.35	0	1500842..1501606	+	254	15603171	-	PM1306	-	hypothetical protein
1308	 43.05	0	1501765..1502793	+	342	15603172	-	PM1307	-	hypothetical protein
1309	 43.61	0	1502800..1503792	+	330	15603173	hemU	PM1308	-	HemU
1310	 40.34	0	1503789..1504544	+	251	15603174	-	PM1309	-	hypothetical protein
1311	 41.70	0	1504537..1505349	+	270	15603175	-	PM1310	-	hypothetical protein
1312	 44.02	0	1505418..1506203	-	261	15603176	tpiA	PM1311	-	triosephosphate isomerase
1313	 37.01	-1	1506381..1506815	+	144	15603177	-	PM1312	-	hypothetical protein
1314	 42.33	0	1506945..1507244	-	99	15603178	-	PM1313	-	hypothetical protein
1315	 39.51	0	1507277..1507843	-	188	15603179	-	PM1314	-	hypothetical protein
1316	 42.27	0	1507861..1508811	-	316	15603180	corA	PM1315	-	magnesium/nickel/cobalt transporter CorA
1317	 40.87	0	1509217..1509561	-	114	15603181	-	PM1316	-	hypothetical protein
1318	 42.71	0	1509644..1510411	-	255	15603182	trmB	PM1317	-	tRNA (guanine-N(7))-methyltransferase
1319	 40.10	0	1510436..1511026	+	196	15603183	-	PM1318	-	hypothetical protein
1320	 43.10	0	1511105..1512241	+	378	15603184	mutY	PM1319	-	MutY
1321	 39.19	0	1512219..1512491	+	90	15603185	-	PM1320	-	hypothetical protein
1322	 39.61	0	1512492..1513574	+	360	15603186	mltC	PM1321	-	murein transglycosylase C
1323	 39.23	0	1514139..1514969	-	276	15603187	tcmP	PM1322	-	TcmP
1324	 41.70	0	1515132..1515944	-	270	15603188	-	PM1323	-	hypothetical protein
1325	 41.35	0	1515862..1516173	+	103	15603189	-	PM1324	-	hypothetical protein
1326	 39.79	0	1516243..1517187	-	314	15603190	-	PM1325	-	hypothetical protein
1327	 38.43	0	1517314..1518825	+	503	15603191	-	PM1326	-	hypothetical protein
1328	 39.66	0	1518818..1519861	+	347	15603192	rbsC_3	PM1327	-	RbsC
1329	 42.58	0	1520407..1521747	+	446	15603193	-	PM1328	-	Na(+)-translocating NADH-quinone reductase subunit A
1330	 44.69	+1	1521750..1522982	+	410	15603194	nqrB	PM1329	-	Na(+)-translocating NADH-quinone reductase subunit B
1331	 41.51	0	1522975..1523757	+	260	15603195	-	PM1330	-	Na(+)-translocating NADH-quinone reductase subunit C
1332	 38.60	0	1523750..1524376	+	208	15603196	-	PM1331	-	Na(+)-translocating NADH-quinone reductase subunit D
1333	 38.86	0	1524380..1524976	+	198	15603197	nqrE	PM1332	-	Na(+)-translocating NADH-quinone reductase subunit E
1334	 41.67	0	1524992..1526215	+	407	15603198	nqr6	PM1333	-	Na(+)-translocating NADH-quinone reductase subunit F
1335	 39.39	0	1526384..1527424	+	346	15603199	apbE	PM1334	-	hypothetical protein
1336	 39.61	0	1527434..1527688	+	84	15603200	-	PM1335	-	hypothetical protein
1337	 43.75	0	1527820..1528971	+	383	15603201	trmU	PM1336	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1338	 40.99	0	1529240..1529827	+	195	15603202	czcD	PM1337	-	CzcD
1339	 44.55	+1	1529874..1531166	-	430	15603203	uhpC	PM1338	-	regulatory protein UhpC
1340	 43.49	0	1531166..1532731	-	521	15603204	uhpB	PM1339	-	sensory histidine kinase UhpB
1341	 42.00	0	1532694..1533293	-	199	15603205	uhpA	PM1340	-	UhpA
1342	 41.09	0	1533364..1534743	-	459	15603206	uhpT	PM1341	-	sugar phosphate antiporter
1343	 39.44	0	1535072..1536004	-	310	15603207	rfaD	PM1342	-	ADP-L-glycero-D-mannoheptose-6-epimerase
1344	 41.67	0	1536444..1537115	+	223	15603208	deoC	PM1343	-	deoxyribose-phosphate aldolase
1345	 39.18	0	1537134..1537886	+	250	15603209	deoR	PM1344	-	hypothetical protein
1346	 42.65	0	1537925..1538536	-	203	15603210	-	PM1345	-	DNA-binding transcriptional repressor FabR
1347	 42.81	0	1538561..1539457	-	298	15603211	oxyR	PM1346	-	DNA-binding transcriptional regulator OxyR
1348	 40.36	0	1539593..1540318	+	241	15603212	-	PM1347	-	hypothetical protein
1349	 34.68	-1	1540375..1540596	-	73	15603213	slyX	PM1348	-	hypothetical protein
1350	 40.73	0	1540688..1541404	+	238	15603214	slyD	PM1349	-	SlyD
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.