IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1196	 45.88	+1	1391204..1391458	+	84	15603061	-	PM1196	-	hypothetical protein
1197	 39.10	0	1391483..1392106	+	207	15603062	vatB	PM1197	-	VatB
1198	 45.61	+1	1392120..1393406	+	428	15603063	hisD	PM1198	-	histidinol dehydrogenase
1199	 46.02	+1	1393410..1394465	+	351	15603064	hisC	PM1199	-	histidinol-phosphate aminotransferase
1200	 43.04	0	1394514..1395605	+	363	15603065	hisB	PM1200	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
1201	 26.85	-2	1395602..1396264	+	220	15603066	-	PM1201	-	hypothetical protein
1202	 43.22	0	1396267..1396863	+	198	15603067	hisH	PM1202	-	imidazole glycerol phosphate synthase subunit HisH
1203	 45.33	+1	1396909..1397658	+	249	15603068	hisA	PM1203	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1204	 45.27	+1	1397640..1398410	+	256	15603069	hisF	PM1204	-	imidazole glycerol phosphate synthase subunit HisF
1205	 29.63	-2	1398444..1398821	+	125	15603070	-	PM1205	-	hypothetical protein
1206	 39.77	0	1398834..1399439	+	201	15603071	hisIE	PM1206	-	HisIE
1207	 41.76	0	1399588..1400133	+	181	15603072	pyrR	PM1207	-	pyrimidine regulatory protein PyrR
1208	 38.68	0	1400201..1401136	+	311	15603073	surA	PM1208	-	hypothetical protein
1209	 41.64	0	1401239..1402105	+	288	15603074	ksgA	PM1209	-	dimethyladenosine transferase
1210	 41.43	0	1402127..1402954	+	275	15603075	apaH	PM1210	-	diadenosine tetraphosphatase
1211	 42.55	0	1403075..1404181	+	368	15603076	-	PM1211	-	hypothetical protein
1212	 42.11	0	1404222..1404506	+	94	15603077	merT	PM1212	-	MerT
1213	 37.25	-1	1404516..1404821	+	101	15603078	merP	PM1213	-	MerP
1214	 43.32	0	1405076..1407658	+	860	15603079	leuS	PM1214	-	leucyl-tRNA synthetase
1215	 39.09	0	1407714..1408217	+	167	15603080	-	PM1215	-	hypothetical protein
1216	 39.91	0	1408217..1409296	+	359	15603081	holA	PM1216	-	DNA polymerase III subunit delta
1217	 38.95	0	1409425..1409691	+	88	15603082	-	PM1217	-	hypothetical protein
1218	 41.79	0	1409757..1410158	-	133	15603083	mutT	PM1218	-	hypothetical protein
1219	 41.96	0	1410251..1412938	-	895	15603084	secA	PM1219	-	preprotein translocase subunit SecA
1220	 40.95	0	1413022..1413336	-	104	15603085	-	PM1220	-	hypothetical protein
1221	 33.99	-1	1413426..1413731	+	101	15603086	-	PM1221	-	hypothetical protein
1222	 38.30	0	1413778..1414683	-	301	15603087	dam	PM1222	-	hypothetical protein
1223	 42.61	0	1414687..1415775	-	362	15603088	aroB	PM1223	-	3-dehydroquinate synthase
1224	 40.53	0	1415792..1416319	-	175	15603089	aroK	PM1224	-	shikimate kinase
1225	 38.65	0	1416502..1417836	-	444	15603090	comE	PM1225	-	ComE
1226	 38.84	0	1417846..1418208	-	120	15603091	comD	PM1226	-	ComD
1227	 36.19	-1	1418211..1418735	-	174	15603092	comC	PM1227	-	hypothetical protein
1228	 36.43	-1	1418735..1419250	-	171	15603093	comB	PM1228	-	ComB
1229	 39.53	0	1419290..1420063	-	257	15603094	comA	PM1229	-	ComA
1230	 42.70	0	1420199..1422760	+	853	15603095	ponA	PM1230	-	PonA
1231	 39.30	0	1422792..1424249	-	485	15603096	gntR_2	PM1231	-	hypothetical protein
1232	 46.73	+1	1424316..1425203	+	295	15603097	-	PM1232	-	pyridoxine biosynthesis protein
1233	 44.85	+1	1425206..1425787	+	193	15603098	-	PM1233	-	hypothetical protein
1234	 42.91	0	1425948..1426793	+	281	15603099	orfJ	PM1234	-	OrfJ
1235	 44.69	+1	1426890..1428245	+	451	15603100	gor	PM1235	-	glutathione reductase
1236	 39.03	0	1428333..1428911	-	192	15603101	tdk	PM1236	-	thymidine kinase
1237	 40.08	0	1428913..1429149	-	78	15603102	-	PM1237	-	hypothetical protein
1238	 45.64	+1	1429170..1430201	-	343	15603103	gcp	PM1238	-	O-sialoglycoprotein endopeptidase
1239	 42.13	0	1430420..1430635	+	71	15603104	rpsU	PM1239	-	30S ribosomal protein S21
1240	 41.28	0	1430751..1432499	+	582	15603105	dnaG	PM1240	-	DNA primase
1241	 40.82	0	1432575..1434443	+	622	15603106	rpoD	PM1241	-	RNA polymerase sigma factor RpoD
1242	 44.49	+1	1434539..1436545	-	668	15603107	tkt_1	PM1242	-	transketolase
1243	 43.50	0	1436717..1437532	+	271	15603108	-	PM1243	-	hypothetical protein
1244	 43.68	0	1437591..1438286	-	231	161723310	sgbE	PM1244	-	L-ribulose-5-phosphate 4-epimerase
1245	 41.35	0	1438280..1439140	-	286	15603110	-	PM1245	-	putative L-xylulose 5-phosphate 3-epimerase
1246	 44.81	+1	1439165..1439809	-	214	15603111	ulaD	PM1246	-	3-keto-L-gulonate-6-phosphate decarboxylase
1247	 44.63	+1	1439828..1441279	-	483	15603112	lyx	PM1247	-	L-xylulose kinase
1248	 42.34	0	1441289..1442176	-	295	15603113	-	PM1248	-	hypothetical protein
1249	 44.23	+1	1442239..1443348	-	369	15603114	-	PM1249	-	hypothetical protein
1250	 44.41	+1	1443388..1444434	-	348	15603115	rbsC_2	PM1250	-	RbsC
1251	 43.28	0	1444478..1445995	-	505	15603116	rbsA_2	PM1251	-	RbsA
1252	 41.24	0	1446073..1447059	-	328	15603117	-	PM1252	-	hypothetical protein
1253	 44.26	+1	1447079..1448359	-	426	15603118	-	PM1253	-	hypothetical protein
1254	 38.92	0	1448356..1448838	-	160	15603119	-	PM1254	-	hypothetical protein
1255	 41.93	0	1448835..1449311	-	158	15603120	-	PM1255	-	hypothetical protein
1256	 44.94	+1	1449321..1450319	-	332	15603121	-	PM1256	-	2,3-diketo-L-gulonate reductase
1257	 40.12	0	1450536..1451345	+	269	15603122	-	PM1257	-	hypothetical protein
1258	 38.51	0	1451428..1452006	-	192	15603123	-	PM1258	-	hypothetical protein
1259	 45.75	+1	1452145..1453449	-	434	15603124	-	PM1259	-	hypothetical protein
1260	 47.30	+1	1453439..1454104	-	221	15603125	thiE	PM1260	-	thiamine-phosphate pyrophosphorylase
1261	 46.47	+1	1454114..1454935	-	273	15603126	thiD	PM1261	-	phosphomethylpyrimidine kinase
1262	 47.14	+1	1454928..1455731	-	267	15603127	thiM	PM1262	-	hydroxyethylthiazole kinase
1263	 42.41	0	1456218..1457165	-	315	15603128	-	PM1263	-	hypothetical protein
1264	 43.12	0	1457188..1457841	-	217	15603129	-	PM1264	-	hypothetical protein
1265	 43.79	0	1457914..1458678	-	254	15603130	-	PM1265	-	hypothetical protein
1266	 44.17	+1	1458656..1459384	-	242	15603131	-	PM1266	-	hypothetical protein
1267	 42.97	0	1459656..1461305	-	549	15603132	-	PM1267	-	hypothetical protein
1268	 44.94	+1	1461400..1462002	+	200	15603133	-	PM1268	-	hypothetical protein
1269	 43.55	0	1462020..1462577	+	185	15603134	-	PM1269	-	hypothetical protein
1270	 44.93	+1	1462577..1463128	+	183	15603135	-	PM1270	-	hypothetical protein
1271	 45.56	+1	1463132..1463941	+	269	15603136	aroE	PM1271	-	shikimate 5-dehydrogenase
1272	 46.97	+1	1464005..1465573	-	522	15603137	-	PM1272	-	autoinducer-2 (AI-2) kinase
1273	 42.13	0	1465620..1466585	-	321	15603138	-	PM1273	-	hypothetical protein
1274	 42.29	0	1466838..1468355	+	505	15603139	-	PM1274	-	hypothetical protein
1275	 43.10	0	1468368..1469360	+	330	15603140	-	PM1275	-	hypothetical protein
1276	 41.42	0	1469374..1470375	+	333	15603141	-	PM1276	-	hypothetical protein
1277	 41.89	0	1470405..1471421	+	338	15603142	-	PM1277	-	hypothetical protein
1278	 43.53	0	1471436..1472308	+	290	15603143	-	PM1278	-	aldolase
1279	 39.68	0	1472400..1472714	+	104	15603144	-	PM1279	-	autoinducer-2 (AI-2) modifying protein LsrG
1280	 42.46	0	1472707..1473396	+	229	15603145	dod_1	PM1280	-	ribulose-phosphate 3-epimerase
1281	 39.61	0	1473445..1474320	-	291	15603146	-	PM1281	-	hypothetical protein
1282	 36.76	-1	1474467..1476803	+	778	15603147	-	PM1282	-	hypothetical protein
1283	 44.10	+1	1476863..1477744	-	293	15603148	ilvY	PM1283	-	DNA-binding transcriptional regulator IlvY
1284	 42.89	0	1477997..1479472	+	491	15603149	ilvC	PM1284	-	ketol-acid reductoisomerase
1285	 40.07	0	1479501..1480301	-	266	15603150	mazG	PM1285	-	nucleoside triphosphate pyrophosphohydrolase
1286	 38.26	0	1480487..1480912	+	141	15603151	uspA	PM1286	-	hypothetical protein
1287	 42.51	0	1481152..1483776	+	874	15603152	alaS	PM1287	-	alanyl-tRNA synthetase
1288	 37.04	-1	1483910..1484098	+	62	15603153	csrA	PM1288	-	carbon storage regulator
1289	 40.54	0	1484374..1485261	+	295	15603154	galU	PM1289	-	hypothetical protein
1290	 41.19	0	1485430..1485747	+	105	15603155	metJ	PM1290	-	transcriptional repressor protein MetJ
1291	 42.12	0	1485823..1486539	-	238	15603156	deoD	PM1291	-	purine nucleoside phosphorylase
1292	 42.44	0	1486745..1488007	-	420	15603157	-	PM1292	-	hypothetical protein
1293	 44.54	+1	1488241..1488909	+	222	15603158	-	PM1293	-	hypothetical protein
1294	 42.02	0	1488853..1489899	-	348	15603159	-	PM1294	-	hypothetical protein
1295	 44.58	+1	1490154..1490402	+	82	15603880	rpsP	PM1294a	-	30S ribosomal protein S16
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.