IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1151	 44.73	+1	1349375..1349611	-	78	15603016	rpmB	PM1151	-	50S ribosomal protein L28
1152	 37.04	-1	1349853..1350527	-	224	15603017	radC	PM1152	-	DNA repair protein RadC
1153	 43.81	0	1350705..1351907	+	400	15603018	dfp	PM1153	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1154	 42.11	0	1351923..1352378	+	151	15603019	dut	PM1154	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1155	 42.67	0	1352382..1352981	+	199	15603020	slmA	PM1155	-	nucleoid occlusion protein
1156	 33.79	-2	1353003..1353221	+	72	15603021	-	PM1156	-	hypothetical protein
1157	 38.73	0	1353273..1353902	+	209	15603022	crp	PM1157	-	cAMP-regulatory protein
1158	 37.83	0	1354034..1354789	+	251	15603023	-	PM1158	-	hypothetical protein
1159	 40.95	0	1354795..1355871	-	358	15603024	recF	PM1159	-	recombination protein F
1160	 40.33	0	1355889..1356989	-	366	15603025	dnaN	PM1160	-	DNA polymerase III subunit beta
1161	 39.75	0	1357003..1358358	-	451	15603026	dnaA	PM1161	-	chromosomal replication initiation protein
1162	 43.70	0	1358683..1358817	+	44	15603027	rpmH	PM1162	-	50S ribosomal protein L34
1163	 40.46	0	1358802..1359194	+	130	15603028	rnpA	PM1163	-	ribonuclease P
1164	 40.23	0	1359158..1359418	+	86	15603029	-	PM1164	-	hypothetical protein
1165	 40.65	0	1359418..1361043	+	541	15603030	yidC	PM1165	-	putative inner membrane protein translocase component YidC
1166	 42.85	0	1361084..1362481	+	465	15603031	trmE	PM1166	-	tRNA modification GTPase TrmE
1167	 38.58	0	1362578..1363969	-	463	15603032	-	PM1167	-	hypothetical protein
1168	 39.52	0	1364187..1364687	-	166	15603033	menG	PM1168	-	ribonuclease activity regulator protein RraA
1169	 39.69	0	1364738..1365649	-	303	15603034	menA	PM1169	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1170	 41.70	0	1365745..1366485	+	246	15603035	-	PM1170	-	hypothetical protein
1171	 36.80	-1	1366510..1366884	-	124	15603036	-	PM1171	-	hypothetical protein
1172	 35.58	-1	1367079..1367924	+	281	15603037	-	PM1172	-	hypothetical protein
1173	 41.49	0	1367982..1369832	-	616	15603038	-	PM1173	-	hypothetical protein
1174	 31.36	-2	1369954..1370865	-	303	15603039	-	PM1174	-	hypothetical protein
1175	 41.72	0	1371025..1372443	+	472	15603040	glnA	PM1175	-	hypothetical protein
1176	 38.67	0	1372545..1372919	+	124	15603041	-	PM1176	-	hypothetical protein
1177	 42.89	0	1373060..1373509	-	149	15603042	rplI	PM1177	-	50S ribosomal protein L9
1178	 42.54	0	1373529..1373756	-	75	15603043	rpsR	PM1178	-	30S ribosomal protein S18
1179	 38.53	0	1373769..1374095	-	108	15603044	priB	PM1179	-	primosomal replication protein N
1180	 42.86	0	1374082..1374459	-	125	15603045	rpsF	PM1180	-	30S ribosomal protein S6
1181	 41.35	0	1374781..1375416	-	211	15603046	lexA	PM1181	-	LexA repressor
1182	 40.21	0	1375875..1378304	+	809	15603047	plsB	PM1182	-	glycerol-3-phosphate acyltransferase
1183	 44.59	+1	1378451..1379827	-	458	15603048	ffh	PM1183	-	hypothetical protein
1184	 38.06	0	1379967..1380770	+	267	15603049	-	PM1184	-	hypothetical protein
1185	 38.25	0	1380872..1382131	+	419	15603050	-	PM1185	-	hypothetical protein
1186	 38.56	0	1382362..1382820	+	152	15603051	exbB	PM1186	-	ExbB
1187	 34.36	-1	1382830..1383219	+	129	15603052	exbD	PM1187	-	hypothetical protein
1188	 43.19	0	1383216..1383986	+	256	15603053	tonB	PM1188	-	TonB
1189	 41.61	0	1384146..1384616	+	156	15603054	-	PM1189	-	hypothetical protein
1190	 43.80	0	1384711..1385484	-	257	15603055	-	PM1190	-	hypothetical protein
1191	 39.96	0	1385548..1386075	-	175	15603056	ppa	PM1191	-	inorganic pyrophosphatase
1192	 43.20	0	1386286..1387542	+	418	15603057	mtr	PM1192	-	Mtr
1193	 41.09	0	1387630..1389279	+	549	15603058	ushA	PM1193	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
1194	 41.57	0	1389260..1390036	+	258	15603059	-	PM1194	-	hypothetical protein
1195	 43.44	0	1390300..1391199	+	299	15603060	hisG	PM1195	-	ATP phosphoribosyltransferase
1196	 45.88	+1	1391204..1391458	+	84	15603061	-	PM1196	-	hypothetical protein
1197	 39.10	0	1391483..1392106	+	207	15603062	vatB	PM1197	-	VatB
1198	 45.61	+1	1392120..1393406	+	428	15603063	hisD	PM1198	-	histidinol dehydrogenase
1199	 46.02	+1	1393410..1394465	+	351	15603064	hisC	PM1199	-	histidinol-phosphate aminotransferase
1200	 43.04	0	1394514..1395605	+	363	15603065	hisB	PM1200	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
1201	 26.85	-2	1395602..1396264	+	220	15603066	-	PM1201	-	hypothetical protein
1202	 43.22	0	1396267..1396863	+	198	15603067	hisH	PM1202	-	imidazole glycerol phosphate synthase subunit HisH
1203	 45.33	+1	1396909..1397658	+	249	15603068	hisA	PM1203	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1204	 45.27	+1	1397640..1398410	+	256	15603069	hisF	PM1204	-	imidazole glycerol phosphate synthase subunit HisF
1205	 29.63	-2	1398444..1398821	+	125	15603070	-	PM1205	-	hypothetical protein
1206	 39.77	0	1398834..1399439	+	201	15603071	hisIE	PM1206	-	HisIE
1207	 41.76	0	1399588..1400133	+	181	15603072	pyrR	PM1207	-	pyrimidine regulatory protein PyrR
1208	 38.68	0	1400201..1401136	+	311	15603073	surA	PM1208	-	hypothetical protein
1209	 41.64	0	1401239..1402105	+	288	15603074	ksgA	PM1209	-	dimethyladenosine transferase
1210	 41.43	0	1402127..1402954	+	275	15603075	apaH	PM1210	-	diadenosine tetraphosphatase
1211	 42.55	0	1403075..1404181	+	368	15603076	-	PM1211	-	hypothetical protein
1212	 42.11	0	1404222..1404506	+	94	15603077	merT	PM1212	-	MerT
1213	 37.25	-1	1404516..1404821	+	101	15603078	merP	PM1213	-	MerP
1214	 43.32	0	1405076..1407658	+	860	15603079	leuS	PM1214	-	leucyl-tRNA synthetase
1215	 39.09	0	1407714..1408217	+	167	15603080	-	PM1215	-	hypothetical protein
1216	 39.91	0	1408217..1409296	+	359	15603081	holA	PM1216	-	DNA polymerase III subunit delta
1217	 38.95	0	1409425..1409691	+	88	15603082	-	PM1217	-	hypothetical protein
1218	 41.79	0	1409757..1410158	-	133	15603083	mutT	PM1218	-	hypothetical protein
1219	 41.96	0	1410251..1412938	-	895	15603084	secA	PM1219	-	preprotein translocase subunit SecA
1220	 40.95	0	1413022..1413336	-	104	15603085	-	PM1220	-	hypothetical protein
1221	 33.99	-1	1413426..1413731	+	101	15603086	-	PM1221	-	hypothetical protein
1222	 38.30	0	1413778..1414683	-	301	15603087	dam	PM1222	-	hypothetical protein
1223	 42.61	0	1414687..1415775	-	362	15603088	aroB	PM1223	-	3-dehydroquinate synthase
1224	 40.53	0	1415792..1416319	-	175	15603089	aroK	PM1224	-	shikimate kinase
1225	 38.65	0	1416502..1417836	-	444	15603090	comE	PM1225	-	ComE
1226	 38.84	0	1417846..1418208	-	120	15603091	comD	PM1226	-	ComD
1227	 36.19	-1	1418211..1418735	-	174	15603092	comC	PM1227	-	hypothetical protein
1228	 36.43	-1	1418735..1419250	-	171	15603093	comB	PM1228	-	ComB
1229	 39.53	0	1419290..1420063	-	257	15603094	comA	PM1229	-	ComA
1230	 42.70	0	1420199..1422760	+	853	15603095	ponA	PM1230	-	PonA
1231	 39.30	0	1422792..1424249	-	485	15603096	gntR_2	PM1231	-	hypothetical protein
1232	 46.73	+1	1424316..1425203	+	295	15603097	-	PM1232	-	pyridoxine biosynthesis protein
1233	 44.85	+1	1425206..1425787	+	193	15603098	-	PM1233	-	hypothetical protein
1234	 42.91	0	1425948..1426793	+	281	15603099	orfJ	PM1234	-	OrfJ
1235	 44.69	+1	1426890..1428245	+	451	15603100	gor	PM1235	-	glutathione reductase
1236	 39.03	0	1428333..1428911	-	192	15603101	tdk	PM1236	-	thymidine kinase
1237	 40.08	0	1428913..1429149	-	78	15603102	-	PM1237	-	hypothetical protein
1238	 45.64	+1	1429170..1430201	-	343	15603103	gcp	PM1238	-	O-sialoglycoprotein endopeptidase
1239	 42.13	0	1430420..1430635	+	71	15603104	rpsU	PM1239	-	30S ribosomal protein S21
1240	 41.28	0	1430751..1432499	+	582	15603105	dnaG	PM1240	-	DNA primase
1241	 40.82	0	1432575..1434443	+	622	15603106	rpoD	PM1241	-	RNA polymerase sigma factor RpoD
1242	 44.49	+1	1434539..1436545	-	668	15603107	tkt_1	PM1242	-	transketolase
1243	 43.50	0	1436717..1437532	+	271	15603108	-	PM1243	-	hypothetical protein
1244	 43.68	0	1437591..1438286	-	231	161723310	sgbE	PM1244	-	L-ribulose-5-phosphate 4-epimerase
1245	 41.35	0	1438280..1439140	-	286	15603110	-	PM1245	-	putative L-xylulose 5-phosphate 3-epimerase
1246	 44.81	+1	1439165..1439809	-	214	15603111	ulaD	PM1246	-	3-keto-L-gulonate-6-phosphate decarboxylase
1247	 44.63	+1	1439828..1441279	-	483	15603112	lyx	PM1247	-	L-xylulose kinase
1248	 42.34	0	1441289..1442176	-	295	15603113	-	PM1248	-	hypothetical protein
1249	 44.23	+1	1442239..1443348	-	369	15603114	-	PM1249	-	hypothetical protein
1250	 44.41	+1	1443388..1444434	-	348	15603115	rbsC_2	PM1250	-	RbsC
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.