IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1099	 43.56	0	1293967..1294230	+	87	15602964	-	PM1099	-	hypothetical protein
1100	 42.63	0	1294248..1294871	+	207	15602965	ureX	PM1100	-	UreX
1101	 33.60	-2	1295002..1295382	+	126	15602966	-	PM1101	-	hypothetical protein
1102	 45.65	+1	1295412..1297481	+	689	15602967	glyS	PM1102	-	glycyl-tRNA synthetase subunit beta
1103	 39.89	0	1297617..1299035	-	472	15602968	aspA	PM1103	-	aspartate ammonia-lyase
1104	 42.62	0	1299364..1300935	+	523	15602969	mtrF	PM1104	-	hypothetical protein
1105	 38.43	0	1301067..1301537	+	156	15602970	fxsA	PM1105	-	FxsA
1106	 40.89	0	1301626..1301916	+	96	15602971	groES	PM1106	-	co-chaperonin GroES
1107	 43.98	0	1302012..1303655	+	547	15602972	groEL	PM1107	-	chaperonin GroEL
1108	 41.33	0	1303790..1304527	+	245	15602973	modB_2	PM1108	-	ModB
1109	 42.16	0	1304496..1305299	+	267	15602974	nifC	PM1109	-	NifC
1110	 42.17	0	1305301..1305900	+	199	15602975	-	PM1110	-	hypothetical protein
1111	 40.87	0	1305918..1306766	+	282	15602976	modD	PM1111	-	molybdenum transport protein ModD
1112	 41.95	0	1306862..1308694	-	610	15602977	deaD	PM1112	-	DeaD
1113	 36.23	-1	1308802..1309698	-	298	161723311	-	PM1113	-	lipoprotein NlpI
1114	 43.64	0	1309782..1311926	-	714	15602979	pnp	PM1114	-	polynucleotide phosphorylase/polyadenylase
1115	 42.76	0	1312375..1313817	-	480	15602980	gltX	PM1115	-	glutamyl-tRNA synthetase
1116	 38.28	0	1314570..1315358	+	262	15602981	-	PM1116	-	hypothetical protein
1117	 41.20	0	1315443..1316663	-	406	15602982	argE	PM1117	-	acetylornithine deacetylase
1118	 42.26	0	1316699..1317706	+	335	15602983	argC	PM1118	-	N-acetyl-gamma-glutamyl-phosphate reductase
1119	 41.86	0	1317707..1318480	+	257	15602984	argB	PM1119	-	acetylglutamate kinase
1120	 44.69	+1	1318496..1319869	+	457	15602985	argH	PM1120	-	argininosuccinate lyase
1121	 44.89	+1	1320204..1320575	+	123	15602986	-	PM1121	-	hypothetical protein
1122	 29.32	-2	1321010..1321333	-	107	15602987	-	PM1122	-	hypothetical protein
1123	 29.57	-2	1321432..1321803	+	123	15602988	-	PM1123	-	hypothetical protein
1124	 41.98	0	1322121..1322363	+	80	15602989	-	PM1124	-	hypothetical protein
1125	 34.56	-1	1322726..1323052	-	108	15602990	-	PM1125	-	hypothetical protein
1126	 38.47	0	1323045..1324076	-	343	15602991	-	PM1126	-	hypothetical protein
1127	 37.56	0	1324015..1327185	-	1056	15602992	-	PM1127	-	hypothetical protein
1128	 35.37	-1	1327410..1327703	-	97	15602993	-	PM1128	-	hypothetical protein
1129	 36.52	-1	1327708..1327989	-	93	15602994	-	PM1129	-	hypothetical protein
1130	 41.31	0	1328062..1328412	-	116	15602995	-	PM1130	-	hypothetical protein
1131	 40.38	0	1328492..1329556	+	354	15602996	perM	PM1131	-	hypothetical protein
1132	 42.40	0	1329614..1332712	-	1032	15602997	acrB	PM1132	-	hypothetical protein
1133	 41.61	0	1332722..1333168	-	148	15602998	-	PM1133	-	hypothetical protein
1134	 42.01	0	1333193..1334356	-	387	15602999	-	PM1134	-	hypothetical protein
1135	 37.59	0	1334434..1334997	-	187	15603000	-	PM1135	-	hypothetical protein
1136	 40.00	0	1335150..1335899	-	249	15603001	-	PM1136	-	hypothetical protein
1137	 42.64	0	1336037..1338250	-	737	15603002	priA	PM1137	-	primosome assembly protein PriA
1138	 28.84	-2	1338406..1339584	+	392	15603003	-	PM1138	-	hypothetical protein
1139	 28.93	-2	1339581..1340489	-	302	15603004	-	PM1139	-	hypothetical protein
1140	 29.59	-2	1340498..1341511	-	337	15603005	-	PM1140	-	hypothetical protein
1141	 31.74	-2	1341541..1342167	-	208	15603006	-	PM1141	-	hypothetical protein
1142	 38.03	0	1342603..1342815	+	70	15603007	rpmE	PM1142	-	50S ribosomal protein L31
1143	 36.47	-1	1342878..1343546	+	222	15603008	losA	PM1143	-	LosA
1144	 33.24	-2	1343549..1344580	+	343	15603009	-	PM1144	-	hypothetical protein
1145	 39.61	0	1344583..1345395	-	270	15603010	fpg	PM1145	-	formamidopyrimidine-DNA glycosylase
1146	 40.77	0	1345444..1346169	-	241	15603011	-	PM1146	-	hypothetical protein
1147	 38.46	0	1346179..1346919	-	246	15603012	-	PM1147	-	hypothetical protein
1148	 38.81	0	1346916..1347938	-	340	15603013	-	PM1148	-	hypothetical protein
1149	 37.80	0	1347944..1348996	-	350	15603014	-	PM1149	-	hypothetical protein
1150	 32.16	-2	1349193..1349363	-	56	15603015	rpmG	PM1150	-	50S ribosomal protein L33
1151	 44.73	+1	1349375..1349611	-	78	15603016	rpmB	PM1151	-	50S ribosomal protein L28
1152	 37.04	-1	1349853..1350527	-	224	15603017	radC	PM1152	-	DNA repair protein RadC
1153	 43.81	0	1350705..1351907	+	400	15603018	dfp	PM1153	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1154	 42.11	0	1351923..1352378	+	151	15603019	dut	PM1154	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1155	 42.67	0	1352382..1352981	+	199	15603020	slmA	PM1155	-	nucleoid occlusion protein
1156	 33.79	-2	1353003..1353221	+	72	15603021	-	PM1156	-	hypothetical protein
1157	 38.73	0	1353273..1353902	+	209	15603022	crp	PM1157	-	cAMP-regulatory protein
1158	 37.83	0	1354034..1354789	+	251	15603023	-	PM1158	-	hypothetical protein
1159	 40.95	0	1354795..1355871	-	358	15603024	recF	PM1159	-	recombination protein F
1160	 40.33	0	1355889..1356989	-	366	15603025	dnaN	PM1160	-	DNA polymerase III subunit beta
1161	 39.75	0	1357003..1358358	-	451	15603026	dnaA	PM1161	-	chromosomal replication initiation protein
1162	 43.70	0	1358683..1358817	+	44	15603027	rpmH	PM1162	-	50S ribosomal protein L34
1163	 40.46	0	1358802..1359194	+	130	15603028	rnpA	PM1163	-	ribonuclease P
1164	 40.23	0	1359158..1359418	+	86	15603029	-	PM1164	-	hypothetical protein
1165	 40.65	0	1359418..1361043	+	541	15603030	yidC	PM1165	-	putative inner membrane protein translocase component YidC
1166	 42.85	0	1361084..1362481	+	465	15603031	trmE	PM1166	-	tRNA modification GTPase TrmE
1167	 38.58	0	1362578..1363969	-	463	15603032	-	PM1167	-	hypothetical protein
1168	 39.52	0	1364187..1364687	-	166	15603033	menG	PM1168	-	ribonuclease activity regulator protein RraA
1169	 39.69	0	1364738..1365649	-	303	15603034	menA	PM1169	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1170	 41.70	0	1365745..1366485	+	246	15603035	-	PM1170	-	hypothetical protein
1171	 36.80	-1	1366510..1366884	-	124	15603036	-	PM1171	-	hypothetical protein
1172	 35.58	-1	1367079..1367924	+	281	15603037	-	PM1172	-	hypothetical protein
1173	 41.49	0	1367982..1369832	-	616	15603038	-	PM1173	-	hypothetical protein
1174	 31.36	-2	1369954..1370865	-	303	15603039	-	PM1174	-	hypothetical protein
1175	 41.72	0	1371025..1372443	+	472	15603040	glnA	PM1175	-	hypothetical protein
1176	 38.67	0	1372545..1372919	+	124	15603041	-	PM1176	-	hypothetical protein
1177	 42.89	0	1373060..1373509	-	149	15603042	rplI	PM1177	-	50S ribosomal protein L9
1178	 42.54	0	1373529..1373756	-	75	15603043	rpsR	PM1178	-	30S ribosomal protein S18
1179	 38.53	0	1373769..1374095	-	108	15603044	priB	PM1179	-	primosomal replication protein N
1180	 42.86	0	1374082..1374459	-	125	15603045	rpsF	PM1180	-	30S ribosomal protein S6
1181	 41.35	0	1374781..1375416	-	211	15603046	lexA	PM1181	-	LexA repressor
1182	 40.21	0	1375875..1378304	+	809	15603047	plsB	PM1182	-	glycerol-3-phosphate acyltransferase
1183	 44.59	+1	1378451..1379827	-	458	15603048	ffh	PM1183	-	hypothetical protein
1184	 38.06	0	1379967..1380770	+	267	15603049	-	PM1184	-	hypothetical protein
1185	 38.25	0	1380872..1382131	+	419	15603050	-	PM1185	-	hypothetical protein
1186	 38.56	0	1382362..1382820	+	152	15603051	exbB	PM1186	-	ExbB
1187	 34.36	-1	1382830..1383219	+	129	15603052	exbD	PM1187	-	hypothetical protein
1188	 43.19	0	1383216..1383986	+	256	15603053	tonB	PM1188	-	TonB
1189	 41.61	0	1384146..1384616	+	156	15603054	-	PM1189	-	hypothetical protein
1190	 43.80	0	1384711..1385484	-	257	15603055	-	PM1190	-	hypothetical protein
1191	 39.96	0	1385548..1386075	-	175	15603056	ppa	PM1191	-	inorganic pyrophosphatase
1192	 43.20	0	1386286..1387542	+	418	15603057	mtr	PM1192	-	Mtr
1193	 41.09	0	1387630..1389279	+	549	15603058	ushA	PM1193	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
1194	 41.57	0	1389260..1390036	+	258	15603059	-	PM1194	-	hypothetical protein
1195	 43.44	0	1390300..1391199	+	299	15603060	hisG	PM1195	-	ATP phosphoribosyltransferase
1196	 45.88	+1	1391204..1391458	+	84	15603061	-	PM1196	-	hypothetical protein
1197	 39.10	0	1391483..1392106	+	207	15603062	vatB	PM1197	-	VatB
1198	 45.61	+1	1392120..1393406	+	428	15603063	hisD	PM1198	-	histidinol dehydrogenase
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.