IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1067	 46.34	+1	1257783..1258451	-	222	15602932	mutH	PM1067	-	DNA mismatch repair protein
1068	 45.49	+1	1258461..1259003	-	180	15602933	dat1	PM1068	-	Dat1
1069	 42.87	0	1259066..1260397	-	443	15602934	-	PM1069	-	hypothetical protein
1070	 39.76	0	1260561..1260887	+	108	15602935	-	PM1070	-	hypothetical protein
1071	 43.08	0	1260935..1262596	-	553	15602936	-	PM1071	-	hypothetical protein
1072	 39.99	0	1262781..1264538	+	585	15602937	-	PM1072	-	hypothetical protein
1073	 38.56	0	1264685..1265239	+	184	15602938	-	PM1073	-	hypothetical protein
1074	 43.54	0	1265437..1267092	+	551	15602939	yhxB	PM1074	-	YhxB
1075	 42.17	0	1267182..1268279	-	365	15602940	-	PM1075	-	hypothetical protein
1076	 36.99	-1	1268411..1268656	-	81	15602941	-	PM1076	-	hypothetical protein
1077	 38.56	0	1268741..1269295	+	184	15602942	-	PM1077	-	hypothetical protein
1078	 42.39	0	1269597..1270391	+	264	15602943	-	PM1078	-	hypothetical protein
1079	 46.46	+1	1270404..1271348	+	314	15602944	-	PM1079	-	hypothetical protein
1080	 41.06	0	1271360..1272097	+	245	15602945	-	PM1080	-	hypothetical protein
1081	 39.96	0	1272243..1274672	-	809	15602946	-	PM1081	-	hypothetical protein
1082	 35.17	-1	1275139..1276170	-	343	15602947	-	PM1082	-	hypothetical protein
1083	 38.74	0	1276230..1276691	-	153	15602948	-	PM1083	-	hypothetical protein
1084	 28.05	-2	1276875..1278161	-	428	15602949	-	PM1084	-	hypothetical protein
1085	 45.35	+1	1278224..1282117	-	1297	15602950	purL	PM1085	-	phosphoribosylformylglycinamidine synthase
1086	 36.33	-1	1282342..1282641	-	99	15602951	fis	PM1086	-	DNA-binding protein Fis
1087	 39.20	0	1282622..1283626	-	334	15602952	-	PM1087	-	hypothetical protein
1088	 42.74	0	1283903..1284784	-	293	15602953	prmA	PM1088	-	ribosomal protein L11 methyltransferase
1089	 40.03	0	1284927..1286360	-	477	15602954	panF	PM1089	-	sodium/panthothenate symporter
1090	 33.73	-2	1286350..1286601	-	83	15602955	-	PM1090	-	hypothetical protein
1091	 42.98	0	1286684..1288030	-	448	15602956	accC	PM1091	-	acetyl-CoA carboxylase biotin carboxylase subunit
1092	 45.02	+1	1288132..1288593	-	153	15602957	accB	PM1092	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
1093	 39.15	0	1288748..1289194	-	148	15602958	aroD	PM1093	-	3-dehydroquinate dehydratase
1094	 43.69	0	1289265..1290278	-	337	15602959	menC	PM1094	-	O-succinylbenzoate synthase
1095	 40.23	0	1290275..1290448	-	57	15602960	-	PM1095	-	hypothetical protein
1096	 43.47	0	1290531..1291388	-	285	15602961	menB	PM1096	-	naphthoate synthase
1097	 42.82	0	1291499..1292752	-	417	15602962	-	PM1097	-	hypothetical protein
1098	 44.52	+1	1293034..1293936	+	300	15602963	glyQ	PM1098	-	glycyl-tRNA synthetase subunit alpha
1099	 43.56	0	1293967..1294230	+	87	15602964	-	PM1099	-	hypothetical protein
1100	 42.63	0	1294248..1294871	+	207	15602965	ureX	PM1100	-	UreX
1101	 33.60	-2	1295002..1295382	+	126	15602966	-	PM1101	-	hypothetical protein
1102	 45.65	+1	1295412..1297481	+	689	15602967	glyS	PM1102	-	glycyl-tRNA synthetase subunit beta
1103	 39.89	0	1297617..1299035	-	472	15602968	aspA	PM1103	-	aspartate ammonia-lyase
1104	 42.62	0	1299364..1300935	+	523	15602969	mtrF	PM1104	-	hypothetical protein
1105	 38.43	0	1301067..1301537	+	156	15602970	fxsA	PM1105	-	FxsA
1106	 40.89	0	1301626..1301916	+	96	15602971	groES	PM1106	-	co-chaperonin GroES
1107	 43.98	0	1302012..1303655	+	547	15602972	groEL	PM1107	-	chaperonin GroEL
1108	 41.33	0	1303790..1304527	+	245	15602973	modB_2	PM1108	-	ModB
1109	 42.16	0	1304496..1305299	+	267	15602974	nifC	PM1109	-	NifC
1110	 42.17	0	1305301..1305900	+	199	15602975	-	PM1110	-	hypothetical protein
1111	 40.87	0	1305918..1306766	+	282	15602976	modD	PM1111	-	molybdenum transport protein ModD
1112	 41.95	0	1306862..1308694	-	610	15602977	deaD	PM1112	-	DeaD
1113	 36.23	-1	1308802..1309698	-	298	161723311	-	PM1113	-	lipoprotein NlpI
1114	 43.64	0	1309782..1311926	-	714	15602979	pnp	PM1114	-	polynucleotide phosphorylase/polyadenylase
1115	 42.76	0	1312375..1313817	-	480	15602980	gltX	PM1115	-	glutamyl-tRNA synthetase
1116	 38.28	0	1314570..1315358	+	262	15602981	-	PM1116	-	hypothetical protein
1117	 41.20	0	1315443..1316663	-	406	15602982	argE	PM1117	-	acetylornithine deacetylase
1118	 42.26	0	1316699..1317706	+	335	15602983	argC	PM1118	-	N-acetyl-gamma-glutamyl-phosphate reductase
1119	 41.86	0	1317707..1318480	+	257	15602984	argB	PM1119	-	acetylglutamate kinase
1120	 44.69	+1	1318496..1319869	+	457	15602985	argH	PM1120	-	argininosuccinate lyase
1121	 44.89	+1	1320204..1320575	+	123	15602986	-	PM1121	-	hypothetical protein
1122	 29.32	-2	1321010..1321333	-	107	15602987	-	PM1122	-	hypothetical protein
1123	 29.57	-2	1321432..1321803	+	123	15602988	-	PM1123	-	hypothetical protein
1124	 41.98	0	1322121..1322363	+	80	15602989	-	PM1124	-	hypothetical protein
1125	 34.56	-1	1322726..1323052	-	108	15602990	-	PM1125	-	hypothetical protein
1126	 38.47	0	1323045..1324076	-	343	15602991	-	PM1126	-	hypothetical protein
1127	 37.56	0	1324015..1327185	-	1056	15602992	-	PM1127	-	hypothetical protein
1128	 35.37	-1	1327410..1327703	-	97	15602993	-	PM1128	-	hypothetical protein
1129	 36.52	-1	1327708..1327989	-	93	15602994	-	PM1129	-	hypothetical protein
1130	 41.31	0	1328062..1328412	-	116	15602995	-	PM1130	-	hypothetical protein
1131	 40.38	0	1328492..1329556	+	354	15602996	perM	PM1131	-	hypothetical protein
1132	 42.40	0	1329614..1332712	-	1032	15602997	acrB	PM1132	-	hypothetical protein
1133	 41.61	0	1332722..1333168	-	148	15602998	-	PM1133	-	hypothetical protein
1134	 42.01	0	1333193..1334356	-	387	15602999	-	PM1134	-	hypothetical protein
1135	 37.59	0	1334434..1334997	-	187	15603000	-	PM1135	-	hypothetical protein
1136	 40.00	0	1335150..1335899	-	249	15603001	-	PM1136	-	hypothetical protein
1137	 42.64	0	1336037..1338250	-	737	15603002	priA	PM1137	-	primosome assembly protein PriA
1138	 28.84	-2	1338406..1339584	+	392	15603003	-	PM1138	-	hypothetical protein
1139	 28.93	-2	1339581..1340489	-	302	15603004	-	PM1139	-	hypothetical protein
1140	 29.59	-2	1340498..1341511	-	337	15603005	-	PM1140	-	hypothetical protein
1141	 31.74	-2	1341541..1342167	-	208	15603006	-	PM1141	-	hypothetical protein
1142	 38.03	0	1342603..1342815	+	70	15603007	rpmE	PM1142	-	50S ribosomal protein L31
1143	 36.47	-1	1342878..1343546	+	222	15603008	losA	PM1143	-	LosA
1144	 33.24	-2	1343549..1344580	+	343	15603009	-	PM1144	-	hypothetical protein
1145	 39.61	0	1344583..1345395	-	270	15603010	fpg	PM1145	-	formamidopyrimidine-DNA glycosylase
1146	 40.77	0	1345444..1346169	-	241	15603011	-	PM1146	-	hypothetical protein
1147	 38.46	0	1346179..1346919	-	246	15603012	-	PM1147	-	hypothetical protein
1148	 38.81	0	1346916..1347938	-	340	15603013	-	PM1148	-	hypothetical protein
1149	 37.80	0	1347944..1348996	-	350	15603014	-	PM1149	-	hypothetical protein
1150	 32.16	-2	1349193..1349363	-	56	15603015	rpmG	PM1150	-	50S ribosomal protein L33
1151	 44.73	+1	1349375..1349611	-	78	15603016	rpmB	PM1151	-	50S ribosomal protein L28
1152	 37.04	-1	1349853..1350527	-	224	15603017	radC	PM1152	-	DNA repair protein RadC
1153	 43.81	0	1350705..1351907	+	400	15603018	dfp	PM1153	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1154	 42.11	0	1351923..1352378	+	151	15603019	dut	PM1154	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1155	 42.67	0	1352382..1352981	+	199	15603020	slmA	PM1155	-	nucleoid occlusion protein
1156	 33.79	-2	1353003..1353221	+	72	15603021	-	PM1156	-	hypothetical protein
1157	 38.73	0	1353273..1353902	+	209	15603022	crp	PM1157	-	cAMP-regulatory protein
1158	 37.83	0	1354034..1354789	+	251	15603023	-	PM1158	-	hypothetical protein
1159	 40.95	0	1354795..1355871	-	358	15603024	recF	PM1159	-	recombination protein F
1160	 40.33	0	1355889..1356989	-	366	15603025	dnaN	PM1160	-	DNA polymerase III subunit beta
1161	 39.75	0	1357003..1358358	-	451	15603026	dnaA	PM1161	-	chromosomal replication initiation protein
1162	 43.70	0	1358683..1358817	+	44	15603027	rpmH	PM1162	-	50S ribosomal protein L34
1163	 40.46	0	1358802..1359194	+	130	15603028	rnpA	PM1163	-	ribonuclease P
1164	 40.23	0	1359158..1359418	+	86	15603029	-	PM1164	-	hypothetical protein
1165	 40.65	0	1359418..1361043	+	541	15603030	yidC	PM1165	-	putative inner membrane protein translocase component YidC
1166	 42.85	0	1361084..1362481	+	465	15603031	trmE	PM1166	-	tRNA modification GTPase TrmE
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.