IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
959	 41.61	0	1131801..1132211	+	136	15602824	hold	PM0959	-	DNA polymerase III subunit psi
960	 38.89	0	1132184..1132651	+	155	15602825	rimI	PM0960	-	ribosomal-protein-alanine N-acetyltransferase
961	 40.24	0	1132693..1136067	-	1124	15602826	recC	PM0961	-	RecC
962	 35.05	-1	1136139..1136429	-	96	15602827	-	PM0962	-	hypothetical protein
963	 35.80	-1	1136413..1137060	-	215	15602828	-	PM0963	-	hypothetical protein
964	 37.96	0	1137057..1137770	-	237	15602829	-	PM0964	-	hypothetical protein
965	 35.61	-1	1137774..1138301	-	175	15602830	-	PM0965	-	hypothetical protein
966	 39.07	0	1138982..1139434	-	150	15602831	-	PM0966	-	hypothetical protein
967	 42.49	0	1139455..1140753	-	432	15602832	tolB	PM0967	-	translocation protein TolB
968	 44.79	+1	1140827..1141996	-	389	15602833	tolA	PM0968	-	cell envelope integrity inner membrane protein TolA
969	 39.72	0	1142012..1142434	-	140	15602834	tolR	PM0969	-	colicin uptake protein TolR
970	 37.97	0	1142510..1143199	-	229	15602835	tolQ	PM0970	-	hypothetical protein
971	 37.96	0	1143218..1143628	-	136	15602836	-	PM0971	-	hypothetical protein
972	 35.42	-1	1143758..1144045	-	95	15602837	-	PM0972	-	hypothetical protein
973	 39.40	0	1144161..1145297	-	378	15602838	cydB	PM0973	-	CydB
974	 38.32	0	1145312..1146874	-	520	15602839	cydA	PM0974	-	CydA
975	 38.32	0	1147334..1147654	+	106	15602840	-	PM0975	-	hypothetical protein
976	 41.47	0	1147713..1148720	-	335	15602841	ruvB	PM0976	-	Holliday junction DNA helicase B
977	 40.16	0	1148739..1149353	-	204	15602842	ruvA	PM0977	-	Holliday junction DNA helicase motor protein
978	 42.41	0	1149417..1149989	-	190	15602843	ruvC	PM0978	-	Holliday junction resolvase
979	 38.20	0	1150071..1150481	-	136	15602844	-	PM0979	-	hypothetical protein
980	 42.11	0	1150567..1151307	-	246	15602845	-	PM0980	-	hypothetical protein
981	 38.92	0	1151294..1151812	-	172	15602846	ntpA	PM0981	-	dATP pyrophosphohydrolase
982	 34.35	-1	1151823..1152608	-	261	15602847	-	PM0982	-	hypothetical protein
983	 41.37	0	1152672..1154438	-	588	15602848	aspS	PM0983	-	aspartyl-tRNA synthetase
984	 36.42	-1	1154657..1155175	+	172	15602849	-	PM0984	-	hypothetical protein
985	 41.32	0	1155241..1155966	+	241	15602850	-	PM0985	-	hypothetical protein
986	 37.17	-1	1156008..1158482	-	824	15602851	-	PM0986	-	hypothetical protein
987	 41.42	0	1158597..1159004	+	135	15602852	gloA	PM0987	-	hypothetical protein
988	 41.78	0	1159095..1159757	+	220	15602853	rnt	PM0988	-	ribonuclease T
989	 41.21	0	1159881..1161239	+	452	15602854	-	PM0989	-	hypothetical protein
990	 34.41	-1	1161290..1161844	+	184	15602855	-	PM0990	-	hypothetical protein
991	 43.05	0	1162348..1165362	-	1004	15602856	rne	PM0991	-	Rne
992	 39.14	0	1165779..1166759	+	326	15602857	rluC	PM0992	-	23S rRNA pseudouridylate synthase C
993	 42.98	0	1166840..1167544	+	234	15602858	-	PM0993	-	NAD-dependent deacetylase
994	 38.32	0	1167598..1167918	-	106	15602859	trxM	PM0994	-	TrxM
995	 40.72	0	1168033..1169142	-	369	15602860	metB	PM0995	-	cystathionine gamma-synthase
996	 40.77	0	1170047..1171996	-	649	15602861	-	PM0996	-	hypothetical protein
997	 39.80	0	1171993..1173120	-	375	15602862	-	PM0997	-	hypothetical protein
998	 33.45	-2	1173209..1174033	-	274	15602863	-	PM0998	-	hypothetical protein
999	 41.18	0	1174475..1175863	-	462	15602864	-	PM0999	-	putative nicotinate phosphoribosyltransferase
1000	 36.88	-1	1176085..1179327	-	1080	15602865	-	PM1000	-	hypothetical protein
1001	 41.33	0	1179742..1181166	-	474	15602866	-	PM1001	-	hypothetical protein
1002	 42.01	0	1181312..1182487	+	391	15602867	-	PM1002	-	hypothetical protein
1003	 37.25	-1	1183307..1184581	+	424	15602868	-	PM1003	-	hypothetical protein
1004	 28.97	-2	1184592..1185830	+	412	15602869	-	PM1004	-	hypothetical protein
1005	 28.56	-2	1185827..1187020	+	397	15602870	-	PM1005	-	hypothetical protein
1006	 29.50	-2	1187020..1188192	+	390	15602871	-	PM1006	-	hypothetical protein
1007	 39.03	0	1188216..1189250	+	344	15602872	wbjB	PM1007	-	WbjB
1008	 38.24	0	1189253..1190374	+	373	15602873	wbjC	PM1008	-	WbjC
1009	 40.23	0	1190387..1191517	+	376	15602874	wbjD	PM1009	-	UDP-N-acetylglucosamine 2-epimerase
1010	 38.33	0	1191517..1192737	+	406	15602875	-	PM1010	-	hypothetical protein
1011	 39.14	0	1192781..1193383	+	200	15602876	rfbP	PM1011	-	RfbP
1012	 36.40	-1	1193385..1194428	+	347	15602877	-	PM1012	-	hypothetical protein
1013	 38.10	0	1194441..1195028	+	195	15602878	-	PM1013	-	hypothetical protein
1014	 41.88	0	1195053..1196222	+	389	15602879	-	PM1014	-	hypothetical protein
1015	 38.78	0	1196239..1198185	+	648	15602880	rfb	PM1015	-	Rfb
1016	 42.61	0	1198287..1199450	+	387	15602881	wza	PM1016	-	polysaccharide export protein
1017	 38.06	0	1199452..1199895	+	147	15602882	-	PM1017	-	hypothetical protein
1018	 38.33	0	1199907..1202006	+	699	15602883	wzs	PM1018	-	Wzs
1019	 37.06	-1	1202109..1202939	-	276	15602884	icc	PM1019	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
1020	 43.68	0	1203107..1203715	-	202	15602885	-	PM1020	-	hypothetical protein
1021	 41.34	0	1203725..1204411	-	228	15602886	-	PM1021	-	hypothetical protein
1022	 43.98	0	1204408..1205544	-	378	15602887	dapE	PM1022	-	succinyl-diaminopimelate desuccinylase
1023	 37.68	0	1205624..1205968	-	114	15602888	-	PM1023	-	hypothetical protein
1024	 40.24	0	1206040..1207935	-	631	15602889	htpG	PM1024	-	heat shock protein 90
1025	 34.40	-1	1208104..1208664	-	186	15602890	opa	PM1025	-	Opa
1026	 37.55	0	1208732..1209229	-	165	15602891	sprT	PM1026	-	hypothetical protein
1027	 43.72	0	1209293..1210447	-	384	15602892	metX	PM1027	-	S-adenosylmethionine synthetase
1028	 45.24	+1	1210599..1211018	-	139	15602893	ndk	PM1028	-	nucleoside diphosphate kinase
1029	 43.60	0	1211028..1212332	-	434	15602894	pepB	PM1029	-	aminopeptidase B
1030	 42.29	0	1212437..1213474	-	345	15602895	rffG	PM1030	-	RffG
1031	 38.36	0	1213607..1213825	+	72	15602896	infA	PM1031	-	translation initiation factor IF-1
1032	 40.37	0	1213879..1215441	-	520	15602897	lnt	PM1032	-	apolipoprotein N-acyltransferase
1033	 40.97	0	1215479..1216381	-	300	15602898	-	PM1033	-	hypothetical protein
1034	 42.83	0	1216498..1217529	-	343	15602899	galM	PM1034	-	aldose 1-epimerase
1035	 43.52	0	1217523..1218680	-	385	15602900	galK	PM1035	-	galactokinase
1036	 41.45	0	1218759..1219805	-	348	15602901	galT	PM1036	-	galactose-1-phosphate uridylyltransferase
1037	 41.49	0	1220029..1221033	+	334	15602902	galR	PM1037	-	GalR
1038	 39.88	0	1221315..1222307	+	330	15602903	mglB	PM1038	-	MglB
1039	 39.64	0	1222380..1223900	+	506	15602904	mglA	PM1039	-	galactose/methyl galaxtoside transporter ATP-binding protein
1040	 42.43	0	1223925..1224935	+	336	15602905	mglC	PM1040	-	beta-methylgalactoside transporter inner membrane component
1041	 42.64	0	1225036..1228473	-	1145	15602906	mfd	PM1041	-	hypothetical protein
1042	 40.62	0	1228616..1230247	-	543	15602907	-	PM1042	-	hypothetical protein
1043	 43.81	0	1230588..1232543	-	651	15602908	-	PM1043	-	hypothetical protein
1044	 38.96	0	1232562..1233290	-	242	15602909	-	PM1044	-	hypothetical protein
1045	 42.98	0	1233407..1233883	-	158	15602910	-	PM1045	-	putative metalloprotease
1046	 41.29	0	1233884..1235002	-	372	15602911	phoH	PM1046	-	hypothetical protein
1047	 41.28	0	1235196..1236026	+	276	15602912	-	PM1047	-	hypothetical protein
1048	 41.03	0	1236075..1238348	-	757	15602913	-	PM1048	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
1049	 39.38	0	1238494..1239402	-	302	15602914	-	PM1049	-	hypothetical protein
1050	 43.49	0	1239413..1240426	-	337	15602915	-	PM1050	-	hypothetical protein
1051	 41.58	0	1240533..1241429	-	298	15602916	dapA	PM1051	-	dihydrodipicolinate synthase
1052	 36.11	-1	1241604..1242071	+	155	15602917	bcp	PM1052	-	thioredoxin-dependent thiol peroxidase
1053	 45.60	+1	1242122..1243303	-	393	15602918	purT	PM1053	-	phosphoribosylglycinamide formyltransferase 2
1054	 40.63	0	1243341..1243847	-	168	15602919	-	PM1054	-	S-ribosylhomocysteinase
1055	 40.42	0	1244023..1244502	-	159	15602920	-	PM1055	-	hypothetical protein
1056	 40.85	0	1244495..1245106	-	203	15602921	-	PM1056	-	hypothetical protein
1057	 42.83	0	1245112..1245711	-	199	15602922	-	PM1057	-	hypothetical protein
1058	 37.01	-1	1245835..1246215	+	126	15602923	-	PM1058	-	hypothetical protein
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.