IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.77   STD DEV: 4.14
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097
1662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
874	 51.03	-2	872182..872424	+	80	119386431	-	Pden_3723	-	hypothetical protein
875	 65.64	0	872490..873362	+	290	119386432	-	Pden_3724	-	response regulator receiver protein
876	 66.11	0	873445..874335	-	296	119386433	tsf	Pden_3725	-	elongation factor Ts
877	 65.90	0	874433..875218	-	261	119386434	rpsB	Pden_3726	-	30S ribosomal protein S2
878	 74.00	+1	875753..875902	+	49	119386435	-	Pden_3727	-	hypothetical protein
879	 62.29	-1	876103..877131	-	342	119386436	-	Pden_3728	-	phage integrase family protein
880	 65.22	0	877128..877334	-	68	119386437	-	Pden_3729	-	hypothetical protein
881	 60.16	-1	877335..877580	-	81	119386438	-	Pden_3730	-	hypothetical protein
882	 60.31	-1	877561..878016	-	151	119386439	-	Pden_3731	-	HNH endonuclease
883	 59.67	-1	878016..878258	-	80	119386440	-	Pden_3732	-	hypothetical protein
884	 61.94	-1	878356..878757	-	133	119386441	-	Pden_3733	-	hypothetical protein
885	 60.93	-1	878995..879273	-	92	119386442	-	Pden_3734	-	hypothetical protein
886	 64.19	0	879266..879910	-	214	119386443	-	Pden_3735	-	hypothetical protein
887	 64.22	0	879900..880430	-	176	119386444	-	Pden_3736	-	hypothetical protein
888	 63.89	0	880555..880806	-	83	119386445	-	Pden_3737	-	hypothetical protein
889	 68.83	0	880905..881876	-	323	119386446	-	Pden_3738	-	Fis family transcriptional regulator
890	 64.50	0	881888..882856	-	322	119386447	-	Pden_3739	-	putative phage-related protein
891	 66.67	0	882959..883261	-	100	119386448	-	Pden_3740	-	hypothetical protein
892	 61.11	-1	883261..883566	-	101	119386449	-	Pden_3741	-	hypothetical protein
893	 67.37	0	883566..883850	-	94	119386450	-	Pden_3742	-	hypothetical protein
894	 57.99	-2	883987..884574	-	195	119386451	-	Pden_3743	-	hypothetical protein
895	 65.84	0	884562..884804	-	80	119386452	-	Pden_3744	-	hypothetical protein
896	 57.21	-2	884798..885220	-	140	119386453	-	Pden_3745	-	hypothetical protein
897	 58.44	-2	885407..885880	-	157	119386454	-	Pden_3746	-	XRE family transcriptional regulator
898	 59.94	-1	886094..886435	+	113	119386455	-	Pden_3747	-	hypothetical protein
899	 66.97	0	886553..886882	+	109	119386456	-	Pden_3748	-	hypothetical protein
900	 66.67	0	886882..887592	+	236	119386457	-	Pden_3749	-	hypothetical protein
901	 67.10	0	887626..888087	+	153	119386458	-	Pden_3750	-	hypothetical protein
902	 67.96	0	888087..888629	+	180	119386459	-	Pden_3751	-	hypothetical protein
903	 67.75	0	888626..888994	+	122	119386460	-	Pden_3752	-	hypothetical protein
904	 68.52	0	890380..890703	+	107	119386461	-	Pden_3754	-	hypothetical protein
905	 61.69	-1	890706..891107	+	133	119386462	-	Pden_3755	-	hypothetical protein
906	 66.89	0	891208..892533	+	441	119386463	-	Pden_3756	-	PBSX family phage terminase large subunit
907	 69.02	0	892594..892848	+	84	119386464	-	Pden_3757	-	hypothetical protein
908	 64.31	0	892848..896072	+	1074	119386465	-	Pden_3758	-	hypothetical protein
909	 66.01	0	896330..898006	+	558	119386466	-	Pden_3759	-	putative head-tail connector protein
910	 65.15	0	898003..898332	+	109	119386467	-	Pden_3760	-	hypothetical protein
911	 68.34	0	898325..898981	+	218	119386468	-	Pden_3761	-	hypothetical protein
912	 65.50	0	898985..900016	+	343	119386469	-	Pden_3762	-	hypothetical protein
913	 67.13	0	900074..900502	+	142	119386470	-	Pden_3763	-	hypothetical protein
914	 66.98	0	900495..900818	+	107	119386471	-	Pden_3764	-	hypothetical protein
915	 58.75	-1	900876..901178	+	100	119386472	-	Pden_3765	-	hypothetical protein
916	 65.19	0	901229..901837	+	202	119386473	-	Pden_3766	-	hypothetical protein
917	 66.72	0	901837..903876	+	679	119386474	-	Pden_3767	-	hypothetical protein
918	 68.38	0	903878..904345	+	155	119386475	-	Pden_3768	-	hypothetical protein
919	 70.47	0	904345..904896	+	183	119386476	-	Pden_3769	-	hypothetical protein
920	 63.61	0	904896..907511	+	871	119386477	-	Pden_3770	-	hypothetical protein
921	 63.45	0	907529..910828	+	1099	119386478	-	Pden_3771	-	hypothetical protein
922	 53.85	-2	910818..911285	-	155	119386479	-	Pden_3772	-	hypothetical protein
923	 63.13	0	911496..911693	-	65	119386480	-	Pden_3773	-	hypothetical protein
924	 63.00	0	911697..911996	-	99	119386481	-	Pden_3774	-	Arc domain-containing protein
925	 61.76	-1	912308..913123	+	271	119386482	-	Pden_3775	-	hypothetical protein
926	 58.91	-1	913120..913377	+	85	119386483	-	Pden_3776	-	hypothetical protein
927	 67.23	0	913374..913730	+	118	119386484	-	Pden_3777	-	hypothetical protein
928	 65.93	0	914005..916314	+	769	119386485	-	Pden_3778	-	metallophosphoesterase
929	 66.67	0	916324..916611	+	95	119386486	-	Pden_3779	-	hypothetical protein
930	 67.17	0	916814..917608	+	264	119386487	-	Pden_3780	-	peptidoglycan binding domain-containing protein
931	 63.53	0	917805..918059	+	84	119386488	-	Pden_3781	-	hypothetical protein
932	 63.66	0	918515..918847	-	110	119386489	-	Pden_3782	-	hypothetical protein
933	 67.37	0	919205..919489	-	94	119386490	-	Pden_3783	-	hypothetical protein
934	 73.50	+1	920022..920606	+	194	119386491	-	Pden_3784	-	Fis family transcriptional regulator
935	 72.31	+1	920603..921682	+	359	119386492	-	Pden_3785	-	2-nitropropane dioxygenase, NPD
936	 63.29	0	921809..923524	+	571	119386493	rpsA	Pden_3786	-	30S ribosomal protein S1
937	 62.15	-1	923722..924009	+	95	119386494	ihfB	Pden_3787	-	integration host factor subunit beta
938	 68.91	0	924048..924449	+	133	119386495	-	Pden_3788	-	hypothetical protein
939	 71.30	+1	924454..925101	+	215	119386496	-	Pden_3789	-	phosphoribosylanthranilate isomerase
940	 68.43	0	925113..925565	+	150	119386497	-	Pden_3790	-	GCN5-related N-acetyltransferase
941	 66.99	0	925618..926850	+	410	119386498	-	Pden_3791	-	tryptophan synthase subunit beta
942	 69.74	0	926867..927484	-	205	119386499	-	Pden_3792	-	DSBA oxidoreductase
943	 70.62	0	927552..928208	+	218	119386500	-	Pden_3793	-	2OG-Fe(II) oxygenase
944	 65.46	0	928302..929129	-	275	119386501	-	Pden_3794	-	hypothetical protein
945	 67.37	0	929216..930628	-	470	119386502	-	Pden_3795	-	polysaccharide deacetylase
946	 66.23	0	930848..932212	+	454	119386503	-	Pden_3796	-	xanthine/uracil/vitamin C permease
947	 67.21	0	932343..933260	-	305	119386504	-	Pden_3797	-	RpiR family transcriptional regulator
948	 69.08	0	933412..934737	+	441	119386505	-	Pden_3798	-	hypothetical protein
949	 69.07	0	934745..936244	+	499	119386506	-	Pden_3799	-	MlrC domain-containing protein
950	 65.91	0	936241..937833	+	530	119386507	-	Pden_3800	-	extracellular solute-binding protein
951	 65.61	0	937889..938833	+	314	119386508	-	Pden_3801	-	binding-protein-dependent transport systems inner membrane component
952	 68.87	0	938830..939693	+	287	119386509	-	Pden_3802	-	binding-protein-dependent transport systems inner membrane component
953	 70.26	0	939693..941363	+	556	119386510	-	Pden_3803	-	ABC transporter related
954	 68.29	0	941360..942220	+	286	119386511	-	Pden_3804	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
955	 68.89	0	942233..942772	+	179	119386512	-	Pden_3805	-	carboxymuconolactone decarboxylase
956	 66.67	0	942769..943281	-	170	119386513	-	Pden_3806	-	single-strand binding protein
957	 68.67	0	943514..944161	+	215	119386514	-	Pden_3807	-	lytic transglycosylase, catalytic
958	 68.76	0	944224..944796	-	190	119386515	-	Pden_3808	-	hypothetical protein
959	 67.97	0	944867..945787	-	306	119386516	-	Pden_3809	-	delta-aminolevulinic acid dehydratase
960	 70.14	0	945864..946583	+	239	119386517	-	Pden_3810	-	hypothetical protein
961	 67.36	0	946626..950090	+	1154	119386518	-	Pden_3811	-	transcription-repair coupling factor
962	 65.07	0	950384..952702	-	772	119386519	-	Pden_3812	-	ATP-dependent Clp protease, ATP-binding subunit clpA
963	 68.94	0	952964..953710	-	248	119386520	-	Pden_3813	-	hydroxyacylglutathione hydrolase
964	 72.92	+1	953762..954544	+	260	119386521	-	Pden_3814	-	methyltransferase type 11
965	 66.04	0	954784..955419	+	211	119386522	-	Pden_3815	-	ATP synthase F1, delta subunit
966	 65.10	0	955419..956954	+	511	119386523	-	Pden_3816	-	F0F1 ATP synthase subunit alpha
967	 65.98	0	956967..957839	+	290	119386524	-	Pden_3817	-	F0F1 ATP synthase subunit gamma
968	 65.05	0	957857..959281	+	474	119386525	-	Pden_3818	-	F0F1 ATP synthase subunit beta
969	 67.34	0	959291..959737	+	148	119386526	-	Pden_3819	-	ATP synthase F1, epsilon subunit
970	 64.39	0	959832..960182	+	116	119386527	-	Pden_3820	-	hypothetical protein
971	 71.21	+1	960188..960958	-	256	119386528	-	Pden_3821	-	alpha/beta hydrolase fold
972	 68.67	0	960955..961554	-	199	119386529	-	Pden_3822	-	DSBA oxidoreductase
973	 64.80	0	961636..962655	+	339	119386530	-	Pden_3823	-	ribose-phosphate pyrophosphokinase
66.77	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.