IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.77   STD DEV: 4.14
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097
1662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
825	 68.57	0	823509..823982	-	157	119386382	-	Pden_3674	-	NUDIX hydrolase
826	 62.04	-1	824056..824379	-	107	119386383	-	Pden_3675	-	hypothetical protein
827	 72.66	+1	824528..825211	+	227	119386384	-	Pden_3676	-	hypothetical protein
828	 71.01	+1	825257..825901	+	214	119386385	-	Pden_3677	-	GntR family transcriptional regulator
829	 69.55	0	825984..827300	-	438	119386386	-	Pden_3678	-	homoserine dehydrogenase
830	 69.29	0	827368..827901	-	177	119386387	-	Pden_3679	-	hypothetical protein
831	 69.53	0	828021..828509	-	162	119386388	-	Pden_3680	-	GCN5-related N-acetyltransferase
832	 66.11	0	828616..830760	-	714	119386389	-	Pden_3681	-	methylmalonyl-CoA mutase
833	 67.99	0	830818..831345	+	175	119386390	-	Pden_3682	-	hypothetical protein
834	 67.42	0	831593..832252	-	219	119386391	-	Pden_3683	-	hypothetical protein
835	 65.31	0	832302..834359	-	685	119386392	-	Pden_3684	-	carbamoyl-phosphate synthase L chain, ATP-binding
836	 71.54	+1	834756..835001	-	81	119386393	-	Pden_3685	-	hypothetical protein
837	 66.43	0	835147..835560	-	137	119386394	-	Pden_3686	-	hypothetical protein
838	 70.95	+1	835970..836623	-	217	119386395	-	Pden_3687	-	hypothetical protein
839	 64.97	0	836649..838181	-	510	119386396	-	Pden_3688	-	carboxyl transferase
840	 70.77	0	838262..839359	+	365	119386397	-	Pden_3689	-	alanine racemase
841	 70.75	0	839356..840114	+	252	119386398	-	Pden_3690	-	hypothetical protein
842	 70.05	0	840114..840851	+	245	119386399	-	Pden_3691	-	ABC transporter related
843	 68.09	0	840967..842094	+	375	119386400	-	Pden_3692	-	PhoH family protein
844	 66.10	0	842087..842611	+	174	119386401	-	Pden_3693	-	hypothetical protein
845	 69.13	0	842608..843540	+	310	119386402	-	Pden_3694	-	CBS domain-containing protein
846	 70.49	0	843547..844356	-	269	119386403	-	Pden_3695	-	GCN5-related N-acetyltransferase
847	 64.29	0	844552..846111	-	519	119386404	guaA	Pden_3696	-	bifunctional GMP synthase/glutamine amidotransferase protein
848	 70.92	0	846293..846904	-	203	119386405	-	Pden_3697	-	thiamine monophosphate synthase
849	 70.99	+1	846979..847719	+	246	119386406	-	Pden_3698	-	RNA methyltransferase
850	 67.26	0	847745..848920	+	391	119386407	-	Pden_3699	-	cytochrome oxidase assembly
851	 68.64	0	848917..850389	+	490	119386408	-	Pden_3700	-	carboxypeptidase Taq
852	 67.41	0	850505..851842	+	445	119386409	-	Pden_3701	-	RNA modification protein
853	 66.74	0	851875..853206	-	443	119386410	-	Pden_3702	-	glutamate--ammonia ligase
854	 63.53	0	853210..854037	-	275	119386411	-	Pden_3703	-	polar amino acid ABC transporter, inner membrane subunit
855	 65.19	0	854034..854915	-	293	119386412	-	Pden_3704	-	binding-protein-dependent transport systems inner membrane component
856	 62.66	0	854964..855686	-	240	119386413	-	Pden_3705	-	extracellular solute-binding protein
857	 67.76	0	855711..856532	-	273	119386414	-	Pden_3706	-	ABC transporter related
858	 71.00	+1	856657..857118	-	153	119386415	-	Pden_3707	-	hypothetical protein
859	 67.68	0	857171..857467	-	98	119386416	-	Pden_3708	-	hypothetical protein
860	 63.59	0	857539..858447	-	302	119386417	-	Pden_3709	-	hypothetical protein
861	 69.52	0	858511..858966	-	151	119386418	-	Pden_3710	-	hypothetical protein
862	 65.39	0	859014..860657	-	547	119386419	-	Pden_3711	-	CTP synthetase
863	 73.45	+1	860806..861336	-	176	119386420	secG	Pden_3712	-	preprotein translocase subunit SecG
864	 71.41	+1	861405..862838	+	477	119386421	-	Pden_3713	-	cobyric acid synthase CobQ
865	 68.78	0	862835..863545	-	236	119386422	-	Pden_3714	-	short-chain dehydrogenase/reductase SDR
866	 70.60	0	863640..864020	-	126	119386423	-	Pden_3715	-	hypothetical protein
867	 63.26	0	864089..865381	-	430	119386424	-	Pden_3716	-	citrate synthase I
868	 67.16	0	865436..866842	-	468	119386425	-	Pden_3717	-	glutamyl-tRNA synthetase
869	 70.19	0	866992..869145	+	717	119386426	-	Pden_3718	-	ComEC/Rec2-related protein
870	 64.21	0	869183..869752	+	189	119386427	-	Pden_3719	-	heme NO binding domain-containing protein
871	 60.85	-1	869749..870711	+	320	119386428	-	Pden_3720	-	diguanylate cyclase
872	 65.98	0	870984..871859	+	291	119386429	-	Pden_3721	-	hypothetical protein
873	 64.39	0	871922..872185	+	87	119386430	-	Pden_3722	-	hypothetical protein
874	 51.03	-2	872182..872424	+	80	119386431	-	Pden_3723	-	hypothetical protein
875	 65.64	0	872490..873362	+	290	119386432	-	Pden_3724	-	response regulator receiver protein
876	 66.11	0	873445..874335	-	296	119386433	tsf	Pden_3725	-	elongation factor Ts
877	 65.90	0	874433..875218	-	261	119386434	rpsB	Pden_3726	-	30S ribosomal protein S2
878	 74.00	+1	875753..875902	+	49	119386435	-	Pden_3727	-	hypothetical protein
879	 62.29	-1	876103..877131	-	342	119386436	-	Pden_3728	-	phage integrase family protein
880	 65.22	0	877128..877334	-	68	119386437	-	Pden_3729	-	hypothetical protein
881	 60.16	-1	877335..877580	-	81	119386438	-	Pden_3730	-	hypothetical protein
882	 60.31	-1	877561..878016	-	151	119386439	-	Pden_3731	-	HNH endonuclease
883	 59.67	-1	878016..878258	-	80	119386440	-	Pden_3732	-	hypothetical protein
884	 61.94	-1	878356..878757	-	133	119386441	-	Pden_3733	-	hypothetical protein
885	 60.93	-1	878995..879273	-	92	119386442	-	Pden_3734	-	hypothetical protein
886	 64.19	0	879266..879910	-	214	119386443	-	Pden_3735	-	hypothetical protein
887	 64.22	0	879900..880430	-	176	119386444	-	Pden_3736	-	hypothetical protein
888	 63.89	0	880555..880806	-	83	119386445	-	Pden_3737	-	hypothetical protein
889	 68.83	0	880905..881876	-	323	119386446	-	Pden_3738	-	Fis family transcriptional regulator
890	 64.50	0	881888..882856	-	322	119386447	-	Pden_3739	-	putative phage-related protein
891	 66.67	0	882959..883261	-	100	119386448	-	Pden_3740	-	hypothetical protein
892	 61.11	-1	883261..883566	-	101	119386449	-	Pden_3741	-	hypothetical protein
893	 67.37	0	883566..883850	-	94	119386450	-	Pden_3742	-	hypothetical protein
894	 57.99	-2	883987..884574	-	195	119386451	-	Pden_3743	-	hypothetical protein
895	 65.84	0	884562..884804	-	80	119386452	-	Pden_3744	-	hypothetical protein
896	 57.21	-2	884798..885220	-	140	119386453	-	Pden_3745	-	hypothetical protein
897	 58.44	-2	885407..885880	-	157	119386454	-	Pden_3746	-	XRE family transcriptional regulator
898	 59.94	-1	886094..886435	+	113	119386455	-	Pden_3747	-	hypothetical protein
899	 66.97	0	886553..886882	+	109	119386456	-	Pden_3748	-	hypothetical protein
900	 66.67	0	886882..887592	+	236	119386457	-	Pden_3749	-	hypothetical protein
901	 67.10	0	887626..888087	+	153	119386458	-	Pden_3750	-	hypothetical protein
902	 67.96	0	888087..888629	+	180	119386459	-	Pden_3751	-	hypothetical protein
903	 67.75	0	888626..888994	+	122	119386460	-	Pden_3752	-	hypothetical protein
904	 68.52	0	890380..890703	+	107	119386461	-	Pden_3754	-	hypothetical protein
905	 61.69	-1	890706..891107	+	133	119386462	-	Pden_3755	-	hypothetical protein
906	 66.89	0	891208..892533	+	441	119386463	-	Pden_3756	-	PBSX family phage terminase large subunit
907	 69.02	0	892594..892848	+	84	119386464	-	Pden_3757	-	hypothetical protein
908	 64.31	0	892848..896072	+	1074	119386465	-	Pden_3758	-	hypothetical protein
909	 66.01	0	896330..898006	+	558	119386466	-	Pden_3759	-	putative head-tail connector protein
910	 65.15	0	898003..898332	+	109	119386467	-	Pden_3760	-	hypothetical protein
911	 68.34	0	898325..898981	+	218	119386468	-	Pden_3761	-	hypothetical protein
912	 65.50	0	898985..900016	+	343	119386469	-	Pden_3762	-	hypothetical protein
913	 67.13	0	900074..900502	+	142	119386470	-	Pden_3763	-	hypothetical protein
914	 66.98	0	900495..900818	+	107	119386471	-	Pden_3764	-	hypothetical protein
915	 58.75	-1	900876..901178	+	100	119386472	-	Pden_3765	-	hypothetical protein
916	 65.19	0	901229..901837	+	202	119386473	-	Pden_3766	-	hypothetical protein
917	 66.72	0	901837..903876	+	679	119386474	-	Pden_3767	-	hypothetical protein
918	 68.38	0	903878..904345	+	155	119386475	-	Pden_3768	-	hypothetical protein
919	 70.47	0	904345..904896	+	183	119386476	-	Pden_3769	-	hypothetical protein
920	 63.61	0	904896..907511	+	871	119386477	-	Pden_3770	-	hypothetical protein
921	 63.45	0	907529..910828	+	1099	119386478	-	Pden_3771	-	hypothetical protein
922	 53.85	-2	910818..911285	-	155	119386479	-	Pden_3772	-	hypothetical protein
923	 63.13	0	911496..911693	-	65	119386480	-	Pden_3773	-	hypothetical protein
924	 63.00	0	911697..911996	-	99	119386481	-	Pden_3774	-	Arc domain-containing protein
66.77	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.