IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.77   STD DEV: 4.14
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097
1662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
773	 70.59	0	774687..775247	+	186	119386330	-	Pden_3622	-	GCN5-related N-acetyltransferase
774	 71.05	+1	775235..775804	-	189	119386331	-	Pden_3623	-	vertebrate C-lysozyme inhibitor
775	 70.70	0	775896..776762	+	288	119386332	-	Pden_3624	-	hypothetical protein
776	 68.88	0	776774..778309	-	511	119386333	-	Pden_3625	-	AAA ATPase
777	 64.35	0	778453..778971	-	172	119386334	-	Pden_3626	-	AsnC family transcriptional regulator
778	 68.02	0	778997..779587	+	196	119386335	-	Pden_3627	-	lysine exporter protein LysE/YggA
779	 74.18	+1	779574..780452	-	292	119386336	-	Pden_3628	-	hypothetical protein
780	 70.75	0	780469..781497	-	342	119386337	-	Pden_3629	-	uroporphyrinogen decarboxylase
781	 70.28	0	781573..782514	+	313	119386338	hemC	Pden_3630	-	porphobilinogen deaminase
782	 72.56	+1	782511..783443	-	310	119386339	-	Pden_3631	-	cobalamin biosynthesis protein CobD
783	 76.17	+2	783440..784039	-	199	119386340	-	Pden_3632	-	phosphoglycerate mutase
784	 65.29	0	784178..785338	+	386	119386341	-	Pden_3633	-	acyl-CoA dehydrogenase domain-containing protein
785	 68.70	0	785338..785877	+	179	119386342	-	Pden_3634	-	hypothetical protein
786	 69.68	0	785895..786359	+	154	119386343	-	Pden_3635	-	hypothetical protein
787	 63.05	0	786419..787054	-	211	119386344	-	Pden_3636	-	OmpW family protein
788	 69.72	0	787177..788781	+	534	119386345	-	Pden_3637	-	propionyl-CoA carboxylase
789	 71.46	+1	788787..789287	+	166	119386346	-	Pden_3638	-	appr-1-p processing domain-containing protein
790	 70.66	0	789367..791295	+	642	119386347	-	Pden_3639	-	carbamoyl-phosphate synthase L chain, ATP-binding
791	 66.82	0	791292..791945	+	217	119386348	-	Pden_3640	-	glutathione S-transferase domain-containing protein
792	 69.77	0	791932..792801	+	289	119386349	-	Pden_3641	-	hydroxymethylglutaryl-CoA lyase
793	 71.65	+1	792801..793583	+	260	119386350	-	Pden_3642	-	enoyl-CoA hydratase
794	 70.68	0	793859..795055	+	398	119386351	-	Pden_3643	-	major facilitator transporter
795	 65.90	0	794966..795748	-	260	119386352	-	Pden_3644	-	hypothetical protein
796	 65.84	0	795841..796083	+	80	119386353	-	Pden_3645	-	hypothetical protein
797	 63.98	0	796319..796765	+	148	119386354	-	Pden_3646	-	heat shock protein Hsp20
798	 71.33	+1	796871..797470	-	199	119386355	-	Pden_3647	-	recombination protein RecR
799	 66.37	0	797471..797812	-	113	119386356	-	Pden_3648	-	hypothetical protein
800	 69.65	0	797816..799594	-	592	119386357	-	Pden_3649	-	DNA polymerase III subunits gamma and tau
801	 65.99	0	799654..799950	-	98	119386358	-	Pden_3650	-	hypothetical protein
802	 68.27	0	800145..800831	-	228	119386359	-	Pden_3651	-	aquaporin Z
803	 69.20	0	800979..802793	+	604	119386360	-	Pden_3652	-	ABC transporter related
804	 61.32	-1	802948..803190	+	80	119386361	-	Pden_3653	-	cold-shock DNA-binding domain-containing protein
805	 66.85	0	804012..805649	-	545	119386362	groEL	Pden_3654	-	chaperonin GroEL
806	 69.00	0	806209..807537	+	442	119386363	-	Pden_3655	-	glycosyl transferase, group 1
807	 69.12	0	807534..808592	+	352	119386364	-	Pden_3656	-	GumN family protein
808	 70.54	0	808582..808917	+	111	119386365	-	Pden_3657	-	hypothetical protein
809	 67.13	0	808917..809558	+	213	119386366	-	Pden_3658	-	hypothetical protein
810	 66.34	0	809625..810545	+	306	119386367	-	Pden_3659	-	putative manganese-dependent inorganic pyrophosphatase
811	 69.54	0	810561..811430	+	289	119386368	-	Pden_3660	-	HAD family hydrolase
812	 63.76	0	811536..811982	+	148	119386369	-	Pden_3661	-	dehydratase
813	 68.82	0	812015..812944	+	309	119386370	-	Pden_3662	-	riboflavin biosynthesis protein RibF
814	 61.90	-1	812944..813384	+	146	119386371	-	Pden_3663	-	hypothetical protein
815	 69.54	0	813381..814424	+	347	119386372	-	Pden_3664	-	threonine aldolase
816	 73.57	+1	814421..814840	-	139	119386373	-	Pden_3665	-	CinA domain-containing protein
817	 69.66	0	814885..815385	-	166	119386374	-	Pden_3666	-	phosphatidylglycerophosphatase A
818	 71.04	+1	815398..816633	-	411	119386375	-	Pden_3667	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
819	 69.70	0	816691..817416	+	241	119386376	-	Pden_3668	-	ribose 5-phosphate isomerase
820	 69.31	0	817413..818813	+	466	119386377	-	Pden_3669	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
821	 69.83	0	818872..820071	+	399	119386378	-	Pden_3670	-	HflK protein
822	 70.81	0	820071..821180	+	369	119386379	-	Pden_3671	-	HflC protein
823	 66.83	0	821309..822499	-	396	119386380	-	Pden_3672	-	hypothetical protein
824	 66.98	0	822864..823505	+	213	119386381	-	Pden_3673	-	TenA family transcription regulator
825	 68.57	0	823509..823982	-	157	119386382	-	Pden_3674	-	NUDIX hydrolase
826	 62.04	-1	824056..824379	-	107	119386383	-	Pden_3675	-	hypothetical protein
827	 72.66	+1	824528..825211	+	227	119386384	-	Pden_3676	-	hypothetical protein
828	 71.01	+1	825257..825901	+	214	119386385	-	Pden_3677	-	GntR family transcriptional regulator
829	 69.55	0	825984..827300	-	438	119386386	-	Pden_3678	-	homoserine dehydrogenase
830	 69.29	0	827368..827901	-	177	119386387	-	Pden_3679	-	hypothetical protein
831	 69.53	0	828021..828509	-	162	119386388	-	Pden_3680	-	GCN5-related N-acetyltransferase
832	 66.11	0	828616..830760	-	714	119386389	-	Pden_3681	-	methylmalonyl-CoA mutase
833	 67.99	0	830818..831345	+	175	119386390	-	Pden_3682	-	hypothetical protein
834	 67.42	0	831593..832252	-	219	119386391	-	Pden_3683	-	hypothetical protein
835	 65.31	0	832302..834359	-	685	119386392	-	Pden_3684	-	carbamoyl-phosphate synthase L chain, ATP-binding
836	 71.54	+1	834756..835001	-	81	119386393	-	Pden_3685	-	hypothetical protein
837	 66.43	0	835147..835560	-	137	119386394	-	Pden_3686	-	hypothetical protein
838	 70.95	+1	835970..836623	-	217	119386395	-	Pden_3687	-	hypothetical protein
839	 64.97	0	836649..838181	-	510	119386396	-	Pden_3688	-	carboxyl transferase
840	 70.77	0	838262..839359	+	365	119386397	-	Pden_3689	-	alanine racemase
841	 70.75	0	839356..840114	+	252	119386398	-	Pden_3690	-	hypothetical protein
842	 70.05	0	840114..840851	+	245	119386399	-	Pden_3691	-	ABC transporter related
843	 68.09	0	840967..842094	+	375	119386400	-	Pden_3692	-	PhoH family protein
844	 66.10	0	842087..842611	+	174	119386401	-	Pden_3693	-	hypothetical protein
845	 69.13	0	842608..843540	+	310	119386402	-	Pden_3694	-	CBS domain-containing protein
846	 70.49	0	843547..844356	-	269	119386403	-	Pden_3695	-	GCN5-related N-acetyltransferase
847	 64.29	0	844552..846111	-	519	119386404	guaA	Pden_3696	-	bifunctional GMP synthase/glutamine amidotransferase protein
848	 70.92	0	846293..846904	-	203	119386405	-	Pden_3697	-	thiamine monophosphate synthase
849	 70.99	+1	846979..847719	+	246	119386406	-	Pden_3698	-	RNA methyltransferase
850	 67.26	0	847745..848920	+	391	119386407	-	Pden_3699	-	cytochrome oxidase assembly
851	 68.64	0	848917..850389	+	490	119386408	-	Pden_3700	-	carboxypeptidase Taq
852	 67.41	0	850505..851842	+	445	119386409	-	Pden_3701	-	RNA modification protein
853	 66.74	0	851875..853206	-	443	119386410	-	Pden_3702	-	glutamate--ammonia ligase
854	 63.53	0	853210..854037	-	275	119386411	-	Pden_3703	-	polar amino acid ABC transporter, inner membrane subunit
855	 65.19	0	854034..854915	-	293	119386412	-	Pden_3704	-	binding-protein-dependent transport systems inner membrane component
856	 62.66	0	854964..855686	-	240	119386413	-	Pden_3705	-	extracellular solute-binding protein
857	 67.76	0	855711..856532	-	273	119386414	-	Pden_3706	-	ABC transporter related
858	 71.00	+1	856657..857118	-	153	119386415	-	Pden_3707	-	hypothetical protein
859	 67.68	0	857171..857467	-	98	119386416	-	Pden_3708	-	hypothetical protein
860	 63.59	0	857539..858447	-	302	119386417	-	Pden_3709	-	hypothetical protein
861	 69.52	0	858511..858966	-	151	119386418	-	Pden_3710	-	hypothetical protein
862	 65.39	0	859014..860657	-	547	119386419	-	Pden_3711	-	CTP synthetase
863	 73.45	+1	860806..861336	-	176	119386420	secG	Pden_3712	-	preprotein translocase subunit SecG
864	 71.41	+1	861405..862838	+	477	119386421	-	Pden_3713	-	cobyric acid synthase CobQ
865	 68.78	0	862835..863545	-	236	119386422	-	Pden_3714	-	short-chain dehydrogenase/reductase SDR
866	 70.60	0	863640..864020	-	126	119386423	-	Pden_3715	-	hypothetical protein
867	 63.26	0	864089..865381	-	430	119386424	-	Pden_3716	-	citrate synthase I
868	 67.16	0	865436..866842	-	468	119386425	-	Pden_3717	-	glutamyl-tRNA synthetase
869	 70.19	0	866992..869145	+	717	119386426	-	Pden_3718	-	ComEC/Rec2-related protein
870	 64.21	0	869183..869752	+	189	119386427	-	Pden_3719	-	heme NO binding domain-containing protein
871	 60.85	-1	869749..870711	+	320	119386428	-	Pden_3720	-	diguanylate cyclase
872	 65.98	0	870984..871859	+	291	119386429	-	Pden_3721	-	hypothetical protein
66.77	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.