IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.77   STD DEV: 4.14
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097
1662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
717	 67.19	0	715570..715953	+	127	119386274	-	Pden_3565	-	hypothetical protein
718	 68.75	0	716125..716892	+	255	119386275	-	Pden_3566	-	two component transcriptional regulator
719	 70.88	0	716868..717983	-	371	119386276	-	Pden_3567	-	response regulator receiver sensor signal transduction histidine kinase
720	 69.75	0	717980..720604	-	874	119386277	-	Pden_3568	-	integral membrane sensor signal transduction histidine kinase
721	 65.20	0	720832..722058	+	408	119386278	-	Pden_3569	-	formamidase
722	 64.52	0	722119..722631	+	170	119386279	-	Pden_3570	-	AmiS/UreI transporter
723	 70.03	0	722641..722937	+	98	119386280	-	Pden_3571	-	hypothetical protein
724	 65.49	0	723093..723860	-	255	119386281	-	Pden_3572	-	short-chain dehydrogenase/reductase SDR
725	 66.25	0	723857..724570	-	237	119386282	-	Pden_3573	-	GntR family transcriptional regulator
726	 63.77	0	724667..725908	+	413	119386283	-	Pden_3574	-	hypothetical protein
727	 63.81	0	725984..726859	+	291	119386284	-	Pden_3575	-	inner-membrane translocator
728	 65.79	0	726867..729383	+	838	119386285	-	Pden_3576	-	ABC transporter related
729	 71.47	+1	729392..730327	+	311	119386286	-	Pden_3577	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
730	 64.63	0	730346..731278	+	310	119386287	-	Pden_3578	-	hypothetical protein
731	 65.83	0	731289..732599	+	436	119386288	-	Pden_3579	-	histidinol dehydrogenase
732	 65.88	0	732596..733354	+	252	119386289	-	Pden_3580	-	short-chain dehydrogenase/reductase SDR
733	 66.67	0	733447..733827	-	126	119386290	-	Pden_3581	-	hypothetical protein
734	 65.53	0	733985..734776	-	263	119386291	-	Pden_3582	-	response regulator receiver protein
735	 67.74	0	734835..735674	+	279	119386292	-	Pden_3583	-	short-chain dehydrogenase/reductase SDR
736	 64.07	0	735702..736973	+	423	119386293	-	Pden_3584	-	FAD-linked oxidoreductase
737	 62.74	0	737038..738234	+	398	119386294	-	Pden_3585	-	ethanolamine utilisation protein, EutH
738	 67.03	0	738420..739511	-	363	119386295	-	Pden_3586	-	transglutaminase domain-containing protein
739	 67.36	0	739698..740423	-	241	119386296	-	Pden_3587	-	hypothetical protein
740	 67.15	0	740435..741883	-	482	119386297	-	Pden_3588	-	amidohydrolase
741	 58.25	-2	741907..742203	-	98	119386298	-	Pden_3589	-	hypothetical protein
742	 55.95	-2	742380..742631	-	83	119386299	-	Pden_3590	-	hypothetical protein
743	 64.97	0	742686..742979	+	97	119386300	-	Pden_3591	-	addiction module antitoxin
744	 61.59	-1	742972..743247	+	91	119386301	-	Pden_3592	-	addiction module antitoxin
745	 65.68	0	743455..744669	-	404	119386302	-	Pden_3593	-	transposase IS66
746	 66.38	0	745050..745397	-	115	119386303	-	Pden_3595	-	IS66 Orf2 family protein
747	 61.30	-1	745691..747589	+	632	119386304	-	Pden_3596	-	phage tape measure protein
748	 64.25	0	747589..748251	+	220	119386305	-	Pden_3597	-	hypothetical protein
749	 64.44	0	748251..748835	+	194	119386306	-	Pden_3598	-	hypothetical protein
750	 52.87	-2	748845..749105	-	86	119386307	-	Pden_3599	-	hypothetical protein
751	 65.66	0	749213..749608	+	131	119386308	-	Pden_3600	-	hypothetical protein
752	 64.41	0	749608..751692	+	694	119386309	-	Pden_3601	-	fibronectin, type III domain-containing protein
753	 60.93	-1	751752..753809	+	685	119386310	-	Pden_3602	-	hypothetical protein
754	 54.01	-2	753875..754198	+	107	119386311	-	Pden_3603	-	hypothetical protein
755	 65.24	0	754198..757080	+	960	119386312	-	Pden_3604	-	hypothetical protein
756	 63.83	0	757105..757386	+	93	119386313	-	Pden_3605	-	hypothetical protein
757	 66.79	0	757589..758383	+	264	119386314	-	Pden_3606	-	peptidoglycan binding domain-containing protein
758	 63.70	0	759034..759303	-	89	119386315	-	Pden_3607	-	hypothetical protein
759	 66.67	0	759414..759689	-	91	119386316	-	Pden_3608	-	hypothetical protein
760	 64.68	0	760497..762914	-	805	119386317	-	Pden_3609	-	ATP-dependent protease La
761	 52.74	-2	763116..763316	-	66	119386318	-	Pden_3610	-	CsbD family protein
762	 69.22	0	764201..765376	+	391	119386319	-	Pden_3611	-	hypothetical protein
763	 66.30	0	765426..768389	-	987	119386320	ileS	Pden_3612	-	isoleucyl-tRNA synthetase
764	 73.40	+1	768541..769713	+	390	119386321	-	Pden_3613	-	monooxygenase, FAD-binding
765	 70.69	0	769733..770155	+	140	119386322	-	Pden_3614	-	hypothetical protein
766	 66.05	0	770204..770527	+	107	119386323	-	Pden_3615	-	glyoxalase/bleomycin resistance protein/dioxygenase
767	 70.14	0	770524..771156	-	210	119386324	-	Pden_3616	-	hypothetical protein
768	 68.16	0	771153..771620	-	155	119386325	-	Pden_3617	-	ribonuclease H
769	 67.99	0	771617..772222	-	201	119386326	-	Pden_3618	-	glutathione S-transferase domain-containing protein
770	 68.77	0	772316..773266	-	316	119386327	-	Pden_3619	-	hydroxymethylbutenyl pyrophosphate reductase
771	 68.62	0	773306..773869	-	187	119386328	-	Pden_3620	-	adenine phosphoribosyltransferase
772	 68.63	0	773869..774531	-	220	119386329	-	Pden_3621	-	hypothetical protein
773	 70.59	0	774687..775247	+	186	119386330	-	Pden_3622	-	GCN5-related N-acetyltransferase
774	 71.05	+1	775235..775804	-	189	119386331	-	Pden_3623	-	vertebrate C-lysozyme inhibitor
775	 70.70	0	775896..776762	+	288	119386332	-	Pden_3624	-	hypothetical protein
776	 68.88	0	776774..778309	-	511	119386333	-	Pden_3625	-	AAA ATPase
777	 64.35	0	778453..778971	-	172	119386334	-	Pden_3626	-	AsnC family transcriptional regulator
778	 68.02	0	778997..779587	+	196	119386335	-	Pden_3627	-	lysine exporter protein LysE/YggA
779	 74.18	+1	779574..780452	-	292	119386336	-	Pden_3628	-	hypothetical protein
780	 70.75	0	780469..781497	-	342	119386337	-	Pden_3629	-	uroporphyrinogen decarboxylase
781	 70.28	0	781573..782514	+	313	119386338	hemC	Pden_3630	-	porphobilinogen deaminase
782	 72.56	+1	782511..783443	-	310	119386339	-	Pden_3631	-	cobalamin biosynthesis protein CobD
783	 76.17	+2	783440..784039	-	199	119386340	-	Pden_3632	-	phosphoglycerate mutase
784	 65.29	0	784178..785338	+	386	119386341	-	Pden_3633	-	acyl-CoA dehydrogenase domain-containing protein
785	 68.70	0	785338..785877	+	179	119386342	-	Pden_3634	-	hypothetical protein
786	 69.68	0	785895..786359	+	154	119386343	-	Pden_3635	-	hypothetical protein
787	 63.05	0	786419..787054	-	211	119386344	-	Pden_3636	-	OmpW family protein
788	 69.72	0	787177..788781	+	534	119386345	-	Pden_3637	-	propionyl-CoA carboxylase
789	 71.46	+1	788787..789287	+	166	119386346	-	Pden_3638	-	appr-1-p processing domain-containing protein
790	 70.66	0	789367..791295	+	642	119386347	-	Pden_3639	-	carbamoyl-phosphate synthase L chain, ATP-binding
791	 66.82	0	791292..791945	+	217	119386348	-	Pden_3640	-	glutathione S-transferase domain-containing protein
792	 69.77	0	791932..792801	+	289	119386349	-	Pden_3641	-	hydroxymethylglutaryl-CoA lyase
793	 71.65	+1	792801..793583	+	260	119386350	-	Pden_3642	-	enoyl-CoA hydratase
794	 70.68	0	793859..795055	+	398	119386351	-	Pden_3643	-	major facilitator transporter
795	 65.90	0	794966..795748	-	260	119386352	-	Pden_3644	-	hypothetical protein
796	 65.84	0	795841..796083	+	80	119386353	-	Pden_3645	-	hypothetical protein
797	 63.98	0	796319..796765	+	148	119386354	-	Pden_3646	-	heat shock protein Hsp20
798	 71.33	+1	796871..797470	-	199	119386355	-	Pden_3647	-	recombination protein RecR
799	 66.37	0	797471..797812	-	113	119386356	-	Pden_3648	-	hypothetical protein
800	 69.65	0	797816..799594	-	592	119386357	-	Pden_3649	-	DNA polymerase III subunits gamma and tau
801	 65.99	0	799654..799950	-	98	119386358	-	Pden_3650	-	hypothetical protein
802	 68.27	0	800145..800831	-	228	119386359	-	Pden_3651	-	aquaporin Z
803	 69.20	0	800979..802793	+	604	119386360	-	Pden_3652	-	ABC transporter related
804	 61.32	-1	802948..803190	+	80	119386361	-	Pden_3653	-	cold-shock DNA-binding domain-containing protein
805	 66.85	0	804012..805649	-	545	119386362	groEL	Pden_3654	-	chaperonin GroEL
806	 69.00	0	806209..807537	+	442	119386363	-	Pden_3655	-	glycosyl transferase, group 1
807	 69.12	0	807534..808592	+	352	119386364	-	Pden_3656	-	GumN family protein
808	 70.54	0	808582..808917	+	111	119386365	-	Pden_3657	-	hypothetical protein
809	 67.13	0	808917..809558	+	213	119386366	-	Pden_3658	-	hypothetical protein
810	 66.34	0	809625..810545	+	306	119386367	-	Pden_3659	-	putative manganese-dependent inorganic pyrophosphatase
811	 69.54	0	810561..811430	+	289	119386368	-	Pden_3660	-	HAD family hydrolase
812	 63.76	0	811536..811982	+	148	119386369	-	Pden_3661	-	dehydratase
813	 68.82	0	812015..812944	+	309	119386370	-	Pden_3662	-	riboflavin biosynthesis protein RibF
814	 61.90	-1	812944..813384	+	146	119386371	-	Pden_3663	-	hypothetical protein
815	 69.54	0	813381..814424	+	347	119386372	-	Pden_3664	-	threonine aldolase
816	 73.57	+1	814421..814840	-	139	119386373	-	Pden_3665	-	CinA domain-containing protein
66.77	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.