version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 601 66.67 0 587614..588063 + 149 119386158 - Pden_3446 - hypothetical protein 602 70.67 0 588344..589516 + 390 119386159 - Pden_3447 - RND family efflux transporter MFP subunit 603 65.64 0 589521..592625 + 1034 119386160 - Pden_3448 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 604 72.33 +1 592622..593998 + 458 119386161 - Pden_3449 - RND efflux system outer membrane lipoprotein 605 66.58 0 594069..595274 - 401 119386162 ampC Pden_3450 - beta-lactamase 606 68.61 0 595356..596231 + 291 119386163 - Pden_3451 - LysR family transcriptional regulator 607 64.51 0 596329..596745 + 138 119386164 - Pden_3452 - hypothetical protein 608 63.92 0 596845..597135 + 96 119386165 - Pden_3453 - hypothetical protein 609 66.11 0 597192..598448 - 418 119386166 - Pden_3454 - LysR family transcriptional regulator 610 70.22 0 598445..599119 - 224 119386167 - Pden_3455 - hypothetical protein 611 65.23 0 599124..599540 - 138 119386168 - Pden_3456 - endoribonuclease L-PSP 612 68.47 0 599599..600870 - 423 119386169 - Pden_3457 - FAD dependent oxidoreductase 613 70.55 0 601117..602274 + 385 119386170 - Pden_3458 - acetylornithine deacetylase 614 66.31 0 602523..603659 + 378 119386171 - Pden_3459 - spermidine/putrescine ABC transporter ATPase subunit 615 65.55 0 603742..604812 + 356 119386172 - Pden_3460 - ABC polyamine/opine transporter, periplasmic substrate-binding protein 616 67.52 0 604937..606229 + 430 119386173 - Pden_3461 - binding-protein-dependent transport systems inner membrane component 617 65.09 0 606235..607188 + 317 119386174 - Pden_3462 - binding-protein-dependent transport systems inner membrane component 618 69.57 0 607236..608441 + 401 119386175 - Pden_3463 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 619 68.63 0 608674..609030 - 118 119386176 - Pden_3464 - ferredoxin 620 64.50 0 609104..610258 - 384 119386177 - Pden_3465 - Rieske (2Fe-2S) domain-containing protein 621 68.51 0 610387..611307 + 306 119386178 - Pden_3466 - LysR family transcriptional regulator 622 69.46 0 611548..612549 - 333 119386179 - Pden_3467 - proline racemase 623 67.51 0 612943..613653 - 236 119386180 - Pden_3468 - CRP/FNR family transcriptional regulator 624 70.08 0 613765..614847 + 360 119386181 - Pden_3469 - hypothetical protein 625 69.05 0 615004..615549 - 181 119386182 - Pden_3470 - hypothetical protein 626 72.71 +1 615599..616954 - 451 119386183 - Pden_3471 - TfuA domain-containing protein 627 71.79 +1 616951..618120 - 389 119386184 - Pden_3472 - hypothetical protein 628 67.90 0 618747..620537 + 596 119386185 - Pden_3473 - adenylyl cyclase class-3/4/guanylyl cyclase 629 68.02 0 620705..622696 + 663 119386186 - Pden_3474 - hypothetical protein 630 68.67 0 622786..623484 - 232 119386187 - Pden_3475 - ThiJ/PfpI domain-containing protein 631 70.50 0 623489..624766 - 425 119386188 - Pden_3476 - NADH:flavin oxidoreductase/NADH oxidase 632 65.01 0 624840..625202 + 120 119386189 - Pden_3477 - MerR family transcriptional regulator 633 68.12 0 625891..626646 - 251 119386190 - Pden_3479 - regulatory proteins, IclR 634 63.44 0 626754..627746 + 330 119386191 - Pden_3480 - TRAP dicarboxylate transporter, DctP subunit 635 63.71 0 627805..628311 + 168 119386192 - Pden_3481 - tripartite ATP-independent periplasmic transporter DctQ 636 65.11 0 628308..629591 + 427 119386193 - Pden_3482 - TRAP dicarboxylate transporter, DctM subunit 637 70.46 0 629588..630667 + 359 119386194 - Pden_3483 - dihydroorotate dehydrogenase 638 63.56 0 630664..631563 + 299 119386195 - Pden_3484 - hypothetical protein 639 70.93 +1 631560..632309 + 249 119386196 - Pden_3485 - HpcH/HpaI aldolase 640 67.88 0 632340..633242 + 300 119386197 - Pden_3486 - hypothetical protein 641 68.24 0 633436..634008 - 190 119386198 - Pden_3487 - MarR family transcriptional regulator 642 67.92 0 634065..635972 + 635 119386199 - Pden_3488 - phenol 2-monooxygenase 643 69.18 0 635969..636961 - 330 119386200 - Pden_3489 - LysR family transcriptional regulator 644 65.64 0 637053..638222 + 389 119386201 - Pden_3490 - 4-hydroxybenzoate 3-monooxygenase 645 71.61 +1 638222..639010 + 262 119386202 - Pden_3491 - 3-oxoadipate enol-lactonase 646 67.36 0 639003..639434 + 143 119386203 - Pden_3492 - 4-carboxymuconolactone decarboxylase 647 64.87 0 639431..640153 + 240 119386204 - Pden_3493 - protocatechuate 3,4-dioxygenase, beta subunit 648 67.23 0 640153..640863 + 236 119386205 - Pden_3494 - protocatechuate 3,4-dioxygenase, alpha subunit 649 67.38 0 640856..641701 + 281 119386206 - Pden_3495 - hypothetical protein 650 74.50 +1 641701..643002 + 433 119386207 - Pden_3496 - fumarate lyase 651 67.74 0 643024..644049 + 341 119386208 - Pden_3497 - TRAP dicarboxylate transporter- DctP subunit 652 65.13 0 644067..644588 + 173 119386209 - Pden_3498 - hypothetical protein 653 65.53 0 644585..645904 + 439 119386210 - Pden_3499 - TRAP dicarboxylate transporter, DctM subunit 654 65.89 0 645946..646842 - 298 119386211 - Pden_3500 - LysR family transcriptional regulator 655 66.67 0 646964..647896 + 310 119386212 - Pden_3501 - glyoxalase/bleomycin resistance protein/dioxygenase 656 67.46 0 647954..648583 + 209 119386213 - Pden_3502 - RC150 657 62.25 -1 648580..648828 + 82 119386214 - Pden_3503 - hypothetical protein 658 64.35 0 648874..649563 + 229 119386215 - Pden_3504 - isochorismatase hydrolase 659 63.37 0 649884..650186 + 100 119386216 - Pden_3505 - hypothetical protein 660 66.21 0 650236..650454 + 72 119386217 - Pden_3506 - DoxX 661 67.80 0 650698..652557 + 619 119386218 - Pden_3507 - amidohydrolase 3 662 70.59 0 652649..654229 + 526 119386219 - Pden_3508 - protein of unknown function DUF894, DitE 663 64.89 0 654270..654662 + 130 119386220 - Pden_3509 - DoxX family protein 664 69.10 0 654707..655651 + 314 119386221 - Pden_3510 - pirin domain-containing protein 665 68.71 0 655815..656942 - 375 119386222 - Pden_3511 - hypothetical protein 666 66.67 0 656939..657409 - 156 119386223 - Pden_3512 - MarR family transcriptional regulator 667 65.26 0 657528..658811 + 427 119386224 - Pden_3513 - LysR family transcriptional regulator 668 67.97 0 658965..660347 + 460 119386225 - Pden_3514 - allantoinase 669 68.60 0 660347..661585 + 412 119386226 - Pden_3515 - allantoate amidohydrolase 670 66.39 0 661587..662678 + 363 119386227 - Pden_3516 - hypothetical protein 671 66.97 0 662681..664339 + 552 119386228 - Pden_3517 - urocanate hydratase 672 66.37 0 664452..665795 + 447 119386229 - Pden_3518 - major facilitator transporter 673 66.79 0 665822..667486 + 554 119386230 - Pden_3519 - phenylalanine/histidine ammonia-lyase 674 67.80 0 667754..668722 + 322 119386231 - Pden_3520 - helix-turn-helix domain-containing protein 675 64.76 0 668767..670866 - 699 119386232 - Pden_3521 - TonB-dependent siderophore receptor 676 69.26 0 671140..672141 + 333 119386233 - Pden_3522 - periplasmic binding protein 677 73.00 +1 672138..673163 + 341 119386234 - Pden_3523 - transport system permease protein 678 72.05 +1 673166..674206 + 346 119386235 - Pden_3524 - transport system permease protein 679 71.64 +1 674203..675066 + 287 119386236 - Pden_3525 - ABC transporter related 680 69.05 0 675279..676580 - 433 119386237 - Pden_3526 - hypothetical protein 681 64.12 0 676659..678743 - 694 119386238 - Pden_3527 - TonB-dependent receptor 682 68.80 0 678951..679748 + 265 119386239 - Pden_3528 - regulatory proteins, IclR 683 70.24 0 679749..680531 - 260 119386240 - Pden_3529 - ABC transporter related 684 68.41 0 680760..681563 + 267 119386241 - Pden_3530 - siderophore-interacting protein 685 67.52 0 681573..682511 + 312 119386242 - Pden_3531 - iron-enterobactin transporter periplasmic binding protein 686 72.46 +1 682508..683215 + 235 119386243 - Pden_3532 - transport system permease protein 687 71.51 +1 683199..683549 + 116 119386244 - Pden_3533 - transport system permease protein 688 71.23 +1 683546..684598 + 350 119386245 - Pden_3534 - transport system permease protein 689 66.18 0 684676..685290 - 204 119386246 - Pden_3535 - glutathione S-transferase domain-containing protein 690 65.05 0 685290..686033 - 247 119386247 - Pden_3536 - GntR family transcriptional regulator 691 70.09 0 686155..686913 + 252 119386248 - Pden_3537 - short-chain dehydrogenase/reductase SDR 692 62.92 0 686930..687436 + 168 119386249 - Pden_3538 - TRAP dicarboxylate family transporter DctQ subunit 693 64.15 0 687446..688756 + 436 119386250 - Pden_3539 - TRAP dicarboxylate transporter, DctM subunit 694 64.25 0 688822..689940 + 372 119386251 - Pden_3540 - TRAP dicarboxylate transporter- DctP subunit 695 68.56 0 690013..690750 + 245 119386252 - Pden_3541 - short-chain dehydrogenase/reductase SDR 696 70.87 0 690766..691551 + 261 119386253 - Pden_3542 - short-chain dehydrogenase/reductase SDR 697 68.01 0 691538..693247 + 569 119386254 - Pden_3543 - fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 698 68.22 0 693244..693693 + 149 119386255 - Pden_3544 - hypothetical protein 699 68.70 0 693902..694393 + 163 119386256 - Pden_3545 - MarR family transcriptional regulator 700 71.06 +1 694390..694821 - 143 119386257 - Pden_3546 - MarR family transcriptional regulator 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0