IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.77   STD DEV: 4.14
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097
1662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
566	 64.29	0	555233..556117	-	294	119386123	-	Pden_3411	-	hypothetical protein
567	 66.11	0	556142..557041	-	299	119386124	-	Pden_3412	-	hypothetical protein
568	 69.17	0	557134..557493	-	119	119386125	-	Pden_3413	-	hypothetical protein
569	 69.93	0	558039..558896	-	285	119386126	-	Pden_3414	-	hypothetical protein
570	 64.86	0	559011..560171	+	386	119386127	-	Pden_3415	-	LysR family transcriptional regulator
571	 68.25	0	560290..561237	-	315	119386128	-	Pden_3416	-	acetamidase/formamidase
572	 69.87	0	561264..561575	-	103	119386129	-	Pden_3417	-	hypothetical protein
573	 69.61	0	561585..562298	-	237	119386130	-	Pden_3418	-	hypothetical protein
574	 70.10	0	562313..563098	-	261	119386131	-	Pden_3419	-	short-chain dehydrogenase/reductase SDR
575	 68.13	0	563140..564366	-	408	119386132	-	Pden_3420	-	aminotransferase, class I and II
576	 71.87	+1	564392..564814	-	140	119386133	-	Pden_3421	-	endoribonuclease L-PSP
577	 68.05	0	564811..566043	-	410	119386134	-	Pden_3422	-	aspartate aminotransferase
578	 70.72	0	566180..567067	+	295	119386135	-	Pden_3423	-	LysR family transcriptional regulator
579	 69.80	0	567071..567997	-	308	119386136	-	Pden_3424	-	dihydrodipicolinate synthetase
580	 69.00	0	568008..568865	-	285	119386137	-	Pden_3425	-	aminotransferase, class IV
581	 66.28	0	568877..569647	-	256	119386138	-	Pden_3426	-	hypothetical protein
582	 66.16	0	569820..570806	+	328	119386139	-	Pden_3427	-	TRAP dicarboxylate transporter- DctP subunit
583	 66.85	0	570897..571439	+	180	119386140	-	Pden_3428	-	tripartite ATP-independent periplasmic transporter DctQ
584	 64.75	0	571452..572753	+	433	119386141	-	Pden_3429	-	TRAP dicarboxylate transporter, DctM subunit
585	 67.70	0	572761..573534	+	257	119386142	-	Pden_3430	-	allophanate hydrolase subunit 1
586	 70.42	0	573531..574595	+	354	119386143	-	Pden_3431	-	urea amidolyase related protein
587	 65.59	0	574592..575242	+	216	119386144	-	Pden_3432	-	GntR family transcriptional regulator
588	 73.29	+1	575239..576189	+	316	119386145	-	Pden_3433	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
589	 72.17	+1	576186..577457	+	423	119386146	-	Pden_3434	-	allantoate amidohydrolase
590	 67.61	0	577454..578089	+	211	119386147	-	Pden_3435	-	GntR family transcriptional regulator
591	 70.85	0	578094..579287	+	397	119386148	-	Pden_3436	-	peptidase M24
592	 67.98	0	579311..579997	+	228	119386149	-	Pden_3437	-	fumarylacetoacetate (FAA) hydrolase
593	 71.51	+1	580165..581424	-	419	119386150	-	Pden_3438	-	integral membrane sensor signal transduction histidine kinase
594	 68.75	0	581421..582140	-	239	119386151	-	Pden_3439	-	two component transcriptional regulator
595	 71.59	+1	582349..582957	+	202	119386152	-	Pden_3440	-	hypothetical protein
596	 70.65	0	583029..583505	+	158	119386153	-	Pden_3441	-	hypothetical protein
597	 64.94	0	583517..583921	+	134	119386154	-	Pden_3442	-	hypothetical protein
598	 67.38	0	583981..584262	-	93	119386155	-	Pden_3443	-	hypothetical protein
599	 72.50	+1	584310..586316	-	668	119386156	-	Pden_3444	-	ABC transporter related
600	 71.39	+1	586309..587514	-	401	119386157	-	Pden_3445	-	RND family efflux transporter MFP subunit
601	 66.67	0	587614..588063	+	149	119386158	-	Pden_3446	-	hypothetical protein
602	 70.67	0	588344..589516	+	390	119386159	-	Pden_3447	-	RND family efflux transporter MFP subunit
603	 65.64	0	589521..592625	+	1034	119386160	-	Pden_3448	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
604	 72.33	+1	592622..593998	+	458	119386161	-	Pden_3449	-	RND efflux system outer membrane lipoprotein
605	 66.58	0	594069..595274	-	401	119386162	ampC	Pden_3450	-	beta-lactamase
606	 68.61	0	595356..596231	+	291	119386163	-	Pden_3451	-	LysR family transcriptional regulator
607	 64.51	0	596329..596745	+	138	119386164	-	Pden_3452	-	hypothetical protein
608	 63.92	0	596845..597135	+	96	119386165	-	Pden_3453	-	hypothetical protein
609	 66.11	0	597192..598448	-	418	119386166	-	Pden_3454	-	LysR family transcriptional regulator
610	 70.22	0	598445..599119	-	224	119386167	-	Pden_3455	-	hypothetical protein
611	 65.23	0	599124..599540	-	138	119386168	-	Pden_3456	-	endoribonuclease L-PSP
612	 68.47	0	599599..600870	-	423	119386169	-	Pden_3457	-	FAD dependent oxidoreductase
613	 70.55	0	601117..602274	+	385	119386170	-	Pden_3458	-	acetylornithine deacetylase
614	 66.31	0	602523..603659	+	378	119386171	-	Pden_3459	-	spermidine/putrescine ABC transporter ATPase subunit
615	 65.55	0	603742..604812	+	356	119386172	-	Pden_3460	-	ABC polyamine/opine transporter, periplasmic substrate-binding protein
616	 67.52	0	604937..606229	+	430	119386173	-	Pden_3461	-	binding-protein-dependent transport systems inner membrane component
617	 65.09	0	606235..607188	+	317	119386174	-	Pden_3462	-	binding-protein-dependent transport systems inner membrane component
618	 69.57	0	607236..608441	+	401	119386175	-	Pden_3463	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
619	 68.63	0	608674..609030	-	118	119386176	-	Pden_3464	-	ferredoxin
620	 64.50	0	609104..610258	-	384	119386177	-	Pden_3465	-	Rieske (2Fe-2S) domain-containing protein
621	 68.51	0	610387..611307	+	306	119386178	-	Pden_3466	-	LysR family transcriptional regulator
622	 69.46	0	611548..612549	-	333	119386179	-	Pden_3467	-	proline racemase
623	 67.51	0	612943..613653	-	236	119386180	-	Pden_3468	-	CRP/FNR family transcriptional regulator
624	 70.08	0	613765..614847	+	360	119386181	-	Pden_3469	-	hypothetical protein
625	 69.05	0	615004..615549	-	181	119386182	-	Pden_3470	-	hypothetical protein
626	 72.71	+1	615599..616954	-	451	119386183	-	Pden_3471	-	TfuA domain-containing protein
627	 71.79	+1	616951..618120	-	389	119386184	-	Pden_3472	-	hypothetical protein
628	 67.90	0	618747..620537	+	596	119386185	-	Pden_3473	-	adenylyl cyclase class-3/4/guanylyl cyclase
629	 68.02	0	620705..622696	+	663	119386186	-	Pden_3474	-	hypothetical protein
630	 68.67	0	622786..623484	-	232	119386187	-	Pden_3475	-	ThiJ/PfpI domain-containing protein
631	 70.50	0	623489..624766	-	425	119386188	-	Pden_3476	-	NADH:flavin oxidoreductase/NADH oxidase
632	 65.01	0	624840..625202	+	120	119386189	-	Pden_3477	-	MerR family transcriptional regulator
633	 68.12	0	625891..626646	-	251	119386190	-	Pden_3479	-	regulatory proteins, IclR
634	 63.44	0	626754..627746	+	330	119386191	-	Pden_3480	-	TRAP dicarboxylate transporter, DctP subunit
635	 63.71	0	627805..628311	+	168	119386192	-	Pden_3481	-	tripartite ATP-independent periplasmic transporter DctQ
636	 65.11	0	628308..629591	+	427	119386193	-	Pden_3482	-	TRAP dicarboxylate transporter, DctM subunit
637	 70.46	0	629588..630667	+	359	119386194	-	Pden_3483	-	dihydroorotate dehydrogenase
638	 63.56	0	630664..631563	+	299	119386195	-	Pden_3484	-	hypothetical protein
639	 70.93	+1	631560..632309	+	249	119386196	-	Pden_3485	-	HpcH/HpaI aldolase
640	 67.88	0	632340..633242	+	300	119386197	-	Pden_3486	-	hypothetical protein
641	 68.24	0	633436..634008	-	190	119386198	-	Pden_3487	-	MarR family transcriptional regulator
642	 67.92	0	634065..635972	+	635	119386199	-	Pden_3488	-	phenol 2-monooxygenase
643	 69.18	0	635969..636961	-	330	119386200	-	Pden_3489	-	LysR family transcriptional regulator
644	 65.64	0	637053..638222	+	389	119386201	-	Pden_3490	-	4-hydroxybenzoate 3-monooxygenase
645	 71.61	+1	638222..639010	+	262	119386202	-	Pden_3491	-	3-oxoadipate enol-lactonase
646	 67.36	0	639003..639434	+	143	119386203	-	Pden_3492	-	4-carboxymuconolactone decarboxylase
647	 64.87	0	639431..640153	+	240	119386204	-	Pden_3493	-	protocatechuate 3,4-dioxygenase, beta subunit
648	 67.23	0	640153..640863	+	236	119386205	-	Pden_3494	-	protocatechuate 3,4-dioxygenase, alpha subunit
649	 67.38	0	640856..641701	+	281	119386206	-	Pden_3495	-	hypothetical protein
650	 74.50	+1	641701..643002	+	433	119386207	-	Pden_3496	-	fumarate lyase
651	 67.74	0	643024..644049	+	341	119386208	-	Pden_3497	-	TRAP dicarboxylate transporter- DctP subunit
652	 65.13	0	644067..644588	+	173	119386209	-	Pden_3498	-	hypothetical protein
653	 65.53	0	644585..645904	+	439	119386210	-	Pden_3499	-	TRAP dicarboxylate transporter, DctM subunit
654	 65.89	0	645946..646842	-	298	119386211	-	Pden_3500	-	LysR family transcriptional regulator
655	 66.67	0	646964..647896	+	310	119386212	-	Pden_3501	-	glyoxalase/bleomycin resistance protein/dioxygenase
656	 67.46	0	647954..648583	+	209	119386213	-	Pden_3502	-	RC150
657	 62.25	-1	648580..648828	+	82	119386214	-	Pden_3503	-	hypothetical protein
658	 64.35	0	648874..649563	+	229	119386215	-	Pden_3504	-	isochorismatase hydrolase
659	 63.37	0	649884..650186	+	100	119386216	-	Pden_3505	-	hypothetical protein
660	 66.21	0	650236..650454	+	72	119386217	-	Pden_3506	-	DoxX
661	 67.80	0	650698..652557	+	619	119386218	-	Pden_3507	-	amidohydrolase 3
662	 70.59	0	652649..654229	+	526	119386219	-	Pden_3508	-	protein of unknown function DUF894, DitE
663	 64.89	0	654270..654662	+	130	119386220	-	Pden_3509	-	DoxX family protein
664	 69.10	0	654707..655651	+	314	119386221	-	Pden_3510	-	pirin domain-containing protein
665	 68.71	0	655815..656942	-	375	119386222	-	Pden_3511	-	hypothetical protein
66.77	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.