version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 529 68.19 0 519717..521225 + 502 119386086 - Pden_3372 - C-5 cytosine-specific DNA methylase 530 70.55 0 521222..521788 + 188 119386087 - Pden_3373 - conjugal transfer protein precursor 531 65.18 0 521824..522159 + 111 119386088 - Pden_3374 - hypothetical protein 532 69.60 0 522163..522981 + 272 119386089 - Pden_3375 - lytic transglycosylase, catalytic 533 68.21 0 523031..523612 + 193 119386090 - Pden_3376 - hypothetical protein 534 70.00 0 523854..525593 + 579 119386091 - Pden_3377 - hypothetical protein 535 69.05 0 525662..525913 + 83 119386092 - Pden_3378 - prevent-host-death family protein 536 65.52 0 525917..526351 + 144 119386093 - Pden_3379 - PilT domain-containing protein 537 55.16 -2 526562..526813 - 83 119386094 - Pden_3380 - hypothetical protein 538 64.79 0 526818..527030 + 70 119386095 - Pden_3381 - helix-turn-helix domain-containing protein 539 62.39 -1 527269..527922 - 217 119386096 - Pden_3382 - class II aldolase/adducin family protein 540 67.38 0 527919..529178 - 419 119386097 - Pden_3383 - type III effector Hrp-dependent outers 541 62.05 -1 529196..530473 - 425 119386098 - Pden_3384 - TRAP dicarboxylate transporter, DctM subunit 542 62.03 -1 530470..531030 - 186 119386099 - Pden_3385 - tripartite ATP-independent periplasmic transporter DctQ 543 64.73 0 531027..531698 - 223 119386100 - Pden_3386 - cyclase family protein 544 63.00 0 531715..532722 - 335 119386101 - Pden_3387 - TRAP dicarboxylate transporter, DctP subunit 545 65.81 0 532760..534163 - 467 119386102 - Pden_3388 - SAF domain-containing protein 546 61.31 -1 534444..535115 + 223 119386103 - Pden_3389 - GntR family transcriptional regulator 547 65.62 0 535370..538231 - 953 119386104 - Pden_3390 - hypothetical protein 548 63.58 0 538268..539467 - 399 119386105 - Pden_3391 - hypothetical protein 549 61.44 -1 539614..539919 - 101 119386106 - Pden_3392 - hypothetical protein 550 64.76 0 540885..541514 + 209 119386107 - Pden_3395 - putative transposase 551 64.49 0 541860..542732 - 290 119386108 - Pden_3396 - LysR family transcriptional regulator 552 63.14 0 542800..543111 + 103 119386109 - Pden_3397 - hypothetical protein 553 66.67 0 543498..543977 + 159 119386110 - Pden_3398 - twin-arginine translocation pathway signal 554 66.19 0 543983..544609 + 208 119386111 - Pden_3399 - ferric reductase domain-containing protein 555 66.89 0 544753..545640 - 295 119386112 - Pden_3400 - molybdenum cofactor synthesis domain-containing protein 556 63.64 0 545967..546131 + 54 119386113 - Pden_3401 - transposase, IS4 557 70.80 0 546172..547575 - 467 119386114 - Pden_3402 - integral membrane sensor signal transduction histidine kinase 558 71.06 +1 547568..548272 - 234 119386115 - Pden_3403 - two component transcriptional regulator 559 67.31 0 548443..549684 + 413 119386116 - Pden_3404 - extracellular solute-binding protein 560 61.51 -1 549751..550623 + 290 119386117 - Pden_3405 - binding-protein-dependent transport systems inner membrane component 561 61.61 -1 550613..551482 + 289 119386118 - Pden_3406 - binding-protein-dependent transport systems inner membrane component 562 65.85 0 551486..552592 + 368 119386119 - Pden_3407 - ABC transporter related 563 50.96 -2 552977..553237 + 86 119386120 - Pden_3408 - hypothetical protein 564 63.33 0 553476..554615 + 379 119386121 - Pden_3409 - creatinase 565 65.16 0 554677..555207 - 176 119386122 - Pden_3410 - hypothetical protein 566 64.29 0 555233..556117 - 294 119386123 - Pden_3411 - hypothetical protein 567 66.11 0 556142..557041 - 299 119386124 - Pden_3412 - hypothetical protein 568 69.17 0 557134..557493 - 119 119386125 - Pden_3413 - hypothetical protein 569 69.93 0 558039..558896 - 285 119386126 - Pden_3414 - hypothetical protein 570 64.86 0 559011..560171 + 386 119386127 - Pden_3415 - LysR family transcriptional regulator 571 68.25 0 560290..561237 - 315 119386128 - Pden_3416 - acetamidase/formamidase 572 69.87 0 561264..561575 - 103 119386129 - Pden_3417 - hypothetical protein 573 69.61 0 561585..562298 - 237 119386130 - Pden_3418 - hypothetical protein 574 70.10 0 562313..563098 - 261 119386131 - Pden_3419 - short-chain dehydrogenase/reductase SDR 575 68.13 0 563140..564366 - 408 119386132 - Pden_3420 - aminotransferase, class I and II 576 71.87 +1 564392..564814 - 140 119386133 - Pden_3421 - endoribonuclease L-PSP 577 68.05 0 564811..566043 - 410 119386134 - Pden_3422 - aspartate aminotransferase 578 70.72 0 566180..567067 + 295 119386135 - Pden_3423 - LysR family transcriptional regulator 579 69.80 0 567071..567997 - 308 119386136 - Pden_3424 - dihydrodipicolinate synthetase 580 69.00 0 568008..568865 - 285 119386137 - Pden_3425 - aminotransferase, class IV 581 66.28 0 568877..569647 - 256 119386138 - Pden_3426 - hypothetical protein 582 66.16 0 569820..570806 + 328 119386139 - Pden_3427 - TRAP dicarboxylate transporter- DctP subunit 583 66.85 0 570897..571439 + 180 119386140 - Pden_3428 - tripartite ATP-independent periplasmic transporter DctQ 584 64.75 0 571452..572753 + 433 119386141 - Pden_3429 - TRAP dicarboxylate transporter, DctM subunit 585 67.70 0 572761..573534 + 257 119386142 - Pden_3430 - allophanate hydrolase subunit 1 586 70.42 0 573531..574595 + 354 119386143 - Pden_3431 - urea amidolyase related protein 587 65.59 0 574592..575242 + 216 119386144 - Pden_3432 - GntR family transcriptional regulator 588 73.29 +1 575239..576189 + 316 119386145 - Pden_3433 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 589 72.17 +1 576186..577457 + 423 119386146 - Pden_3434 - allantoate amidohydrolase 590 67.61 0 577454..578089 + 211 119386147 - Pden_3435 - GntR family transcriptional regulator 591 70.85 0 578094..579287 + 397 119386148 - Pden_3436 - peptidase M24 592 67.98 0 579311..579997 + 228 119386149 - Pden_3437 - fumarylacetoacetate (FAA) hydrolase 593 71.51 +1 580165..581424 - 419 119386150 - Pden_3438 - integral membrane sensor signal transduction histidine kinase 594 68.75 0 581421..582140 - 239 119386151 - Pden_3439 - two component transcriptional regulator 595 71.59 +1 582349..582957 + 202 119386152 - Pden_3440 - hypothetical protein 596 70.65 0 583029..583505 + 158 119386153 - Pden_3441 - hypothetical protein 597 64.94 0 583517..583921 + 134 119386154 - Pden_3442 - hypothetical protein 598 67.38 0 583981..584262 - 93 119386155 - Pden_3443 - hypothetical protein 599 72.50 +1 584310..586316 - 668 119386156 - Pden_3444 - ABC transporter related 600 71.39 +1 586309..587514 - 401 119386157 - Pden_3445 - RND family efflux transporter MFP subunit 601 66.67 0 587614..588063 + 149 119386158 - Pden_3446 - hypothetical protein 602 70.67 0 588344..589516 + 390 119386159 - Pden_3447 - RND family efflux transporter MFP subunit 603 65.64 0 589521..592625 + 1034 119386160 - Pden_3448 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 604 72.33 +1 592622..593998 + 458 119386161 - Pden_3449 - RND efflux system outer membrane lipoprotein 605 66.58 0 594069..595274 - 401 119386162 ampC Pden_3450 - beta-lactamase 606 68.61 0 595356..596231 + 291 119386163 - Pden_3451 - LysR family transcriptional regulator 607 64.51 0 596329..596745 + 138 119386164 - Pden_3452 - hypothetical protein 608 63.92 0 596845..597135 + 96 119386165 - Pden_3453 - hypothetical protein 609 66.11 0 597192..598448 - 418 119386166 - Pden_3454 - LysR family transcriptional regulator 610 70.22 0 598445..599119 - 224 119386167 - Pden_3455 - hypothetical protein 611 65.23 0 599124..599540 - 138 119386168 - Pden_3456 - endoribonuclease L-PSP 612 68.47 0 599599..600870 - 423 119386169 - Pden_3457 - FAD dependent oxidoreductase 613 70.55 0 601117..602274 + 385 119386170 - Pden_3458 - acetylornithine deacetylase 614 66.31 0 602523..603659 + 378 119386171 - Pden_3459 - spermidine/putrescine ABC transporter ATPase subunit 615 65.55 0 603742..604812 + 356 119386172 - Pden_3460 - ABC polyamine/opine transporter, periplasmic substrate-binding protein 616 67.52 0 604937..606229 + 430 119386173 - Pden_3461 - binding-protein-dependent transport systems inner membrane component 617 65.09 0 606235..607188 + 317 119386174 - Pden_3462 - binding-protein-dependent transport systems inner membrane component 618 69.57 0 607236..608441 + 401 119386175 - Pden_3463 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 619 68.63 0 608674..609030 - 118 119386176 - Pden_3464 - ferredoxin 620 64.50 0 609104..610258 - 384 119386177 - Pden_3465 - Rieske (2Fe-2S) domain-containing protein 621 68.51 0 610387..611307 + 306 119386178 - Pden_3466 - LysR family transcriptional regulator 622 69.46 0 611548..612549 - 333 119386179 - Pden_3467 - proline racemase 623 67.51 0 612943..613653 - 236 119386180 - Pden_3468 - CRP/FNR family transcriptional regulator 624 70.08 0 613765..614847 + 360 119386181 - Pden_3469 - hypothetical protein 625 69.05 0 615004..615549 - 181 119386182 - Pden_3470 - hypothetical protein 626 72.71 +1 615599..616954 - 451 119386183 - Pden_3471 - TfuA domain-containing protein 627 71.79 +1 616951..618120 - 389 119386184 - Pden_3472 - hypothetical protein 628 67.90 0 618747..620537 + 596 119386185 - Pden_3473 - adenylyl cyclase class-3/4/guanylyl cyclase 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0