version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 379 62.60 -1 378583..378828 + 81 119385936 - Pden_3214 - hypothetical protein 380 61.87 -1 378959..379333 - 124 119385937 - Pden_3215 - carboxymuconolactone decarboxylase 381 63.12 0 379406..380335 - 309 119385938 - Pden_3216 - 3-hydroxyisobutyrate dehydrogenase 382 58.92 -1 380455..380880 - 141 119385939 - Pden_3217 - cupin 2 domain-containing protein 383 59.96 -1 380901..381794 - 297 119385940 - Pden_3218 - beta-lactamase domain-containing protein 384 59.38 -1 381847..382848 - 333 119385941 - Pden_3219 - TRAP dicarboxylate transporter- DctP subunit 385 57.81 -2 382965..383393 - 142 119385942 - Pden_3220 - thioesterase superfamily protein 386 61.43 -1 383452..384405 - 317 119385943 - Pden_3221 - hypothetical protein 387 61.91 -1 384445..385959 - 504 119385944 - Pden_3222 - hypothetical protein 388 59.33 -1 385965..386414 - 149 119385945 - Pden_3223 - hypothetical protein 389 63.02 0 386490..388244 - 584 119385946 - Pden_3224 - acyl-CoA dehydrogenase domain-containing protein 390 64.40 0 388262..390559 - 765 119385947 - Pden_3225 - 3-hydroxyacyl-CoA dehydrogenase, NAD-binding 391 63.81 0 390556..391677 - 373 119385948 - Pden_3226 - acetyl-CoA acetyltransferases 392 59.29 -1 391797..393029 - 410 119385949 - Pden_3227 - L-carnitine dehydratase/bile acid-inducible protein F 393 62.73 0 393111..394610 - 499 119385950 - Pden_3228 - aldehyde dehydrogenase 394 60.49 -1 394918..396066 + 382 119385951 - Pden_3229 - hypothetical protein 395 63.63 0 396188..397768 + 526 119385952 - Pden_3230 - AMP-dependent synthetase and ligase 396 56.02 -2 397808..398662 + 284 119385953 - Pden_3231 - IclR family transciptional regulator 397 62.24 -1 398991..399803 - 270 119385954 - Pden_3232 - histidine kinase 398 61.65 -1 400008..400685 - 225 119385955 - Pden_3233 - transposase IS116/IS110/IS902 family protein 399 53.33 -2 400725..401084 - 119 119385956 - Pden_3234 - hypothetical protein 400 64.97 0 401247..402308 + 353 119385957 - Pden_3235 - hypothetical protein 401 67.18 0 402410..403183 + 257 119385958 - Pden_3236 - NmrA family protein 402 63.53 0 403185..404078 - 297 119385959 - Pden_3237 - LysR family transcriptional regulator 403 59.92 -1 404224..404697 + 157 119385960 - Pden_3238 - hypothetical protein 404 61.63 -1 404744..405418 + 224 119385961 - Pden_3239 - hypothetical protein 405 67.17 0 405618..406619 + 333 119385962 - Pden_3240 - hypothetical protein 406 64.21 0 406649..407218 + 189 119385963 - Pden_3241 - twin-arginine translocation pathway signal 407 61.08 -1 407264..408247 + 327 119385964 - Pden_3242 - aldo/keto reductase 408 66.07 0 408296..409462 + 388 119385965 - Pden_3243 - aldo/keto reductase 409 65.86 0 409473..410462 + 329 119385966 - Pden_3244 - aldo/keto reductase 410 62.51 -1 410491..411477 + 328 119385967 - Pden_3245 - hypothetical protein 411 66.67 0 411556..411753 + 65 119385968 - Pden_3246 - hypothetical protein 412 63.23 0 411867..412448 + 193 119385969 - Pden_3247 - transposase 413 63.02 0 412476..413243 - 255 119385970 - Pden_3248 - regulatory proteins, IclR 414 64.86 0 414038..414535 - 165 119385971 - Pden_3250 - hypothetical protein 415 64.51 0 414737..415615 + 292 119385972 - Pden_3251 - alpha/beta hydrolase fold 416 63.49 0 415612..415989 + 125 119385973 - Pden_3252 - MerR family transcriptional regulator 417 67.85 0 416027..417628 + 533 119385974 - Pden_3253 - protein of unknown function DUF894, DitE 418 67.17 0 418832..419227 + 131 119385975 - Pden_3255 - cupin 2 domain-containing protein 419 67.85 0 419378..420307 + 309 119385976 - Pden_3256 - 3-hydroxyisobutyrate dehydrogenase 420 62.64 0 420270..420716 + 148 119385977 - Pden_3257 - carboxymuconolactone decarboxylase 421 62.57 -1 420838..421839 + 333 119385978 - Pden_3258 - TRAP dicarboxylate transporter- DctP subunit 422 65.62 0 422255..422542 + 95 119385979 - Pden_3259 - putative integrase/recombinase 423 67.80 0 422920..424332 + 470 119385980 - Pden_3260 - aldehyde dehydrogenase 424 66.22 0 425326..426882 + 518 119385981 - Pden_3262 - transposase, IS204/IS1001/IS1096/IS1165 family protein 425 61.81 -1 426907..427194 - 95 119385982 - Pden_3263 - hypothetical protein 426 71.05 +1 427531..429057 - 508 119385983 - Pden_3264 - aldehyde dehydrogenase 427 58.75 -1 429142..430152 - 336 119385984 - Pden_3265 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like 428 60.95 -1 430569..431600 + 343 119385985 - Pden_3266 - hypothetical protein 429 62.53 -1 431624..432613 + 329 119385986 - Pden_3267 - amidohydrolase 2 430 63.61 0 432650..434680 + 676 119385987 - Pden_3268 - hypothetical protein 431 61.24 -1 434713..435375 + 220 119385988 - Pden_3269 - hypothetical protein 432 66.28 0 435394..436701 - 435 119385989 - Pden_3270 - major facilitator transporter 433 62.80 0 436878..438143 + 421 119385990 - Pden_3271 - LysR family transcriptional regulator 434 64.67 0 438194..439045 - 283 119385991 - Pden_3272 - HpcH/HpaI aldolase 435 65.03 0 439072..440046 - 324 119385992 - Pden_3273 - hypothetical protein 436 62.21 -1 440299..441330 + 343 119385993 - Pden_3274 - amidohydrolase 2 437 66.55 0 441327..443006 + 559 119385994 - Pden_3275 - thiamine pyrophosphate binding domain-containing protein 438 60.42 -1 443021..443260 + 79 119385995 - Pden_3276 - hypothetical protein 439 62.36 -1 443257..444138 + 293 119385996 - Pden_3277 - amidohydrolase 2 440 61.87 -1 444135..445052 + 305 119385997 - Pden_3278 - hypothetical protein 441 55.41 -2 445296..446237 + 313 119385998 - Pden_3279 - hypothetical protein 442 63.63 0 446254..447207 - 317 119385999 - Pden_3280 - integrase catalytic subunit 443 66.15 0 447565..449121 + 518 119386000 - Pden_3281 - transposase, IS204/IS1001/IS1096/IS1165 family protein 444 67.52 0 449183..449533 - 116 119386001 - Pden_3282 - hypothetical protein 445 66.45 0 449813..451183 - 456 119386002 - Pden_3283 - integral membrane sensor signal transduction histidine kinase 446 65.45 0 451180..451839 - 219 119386003 - Pden_3284 - two component transcriptional regulator 447 61.59 -1 451981..452295 + 104 119386004 - Pden_3285 - hypothetical protein 448 64.93 0 452288..452920 + 210 119386005 - Pden_3286 - cytochrome B561 449 60.07 -1 453110..453412 + 100 119386006 - Pden_3287 - hypothetical protein 450 70.60 0 453524..453904 + 126 119386007 - Pden_3288 - hypothetical protein 451 66.03 0 453931..454401 + 156 119386008 - Pden_3289 - hypothetical protein 452 68.75 0 454411..456618 + 735 119386009 - Pden_3290 - oxidoreductase FAD/NAD(P)-binding subunit 453 70.39 0 456599..457591 + 330 119386010 - Pden_3291 - ApbE family lipoprotein 454 60.76 -1 457734..458207 + 157 119386011 - Pden_3292 - hypothetical protein 455 68.43 0 458241..459146 - 301 119386012 - Pden_3293 - LysR family transcriptional regulator 456 65.75 0 459255..459473 + 72 119386013 - Pden_3294 - heavy metal transport/detoxification protein 457 69.64 0 459535..461454 + 639 119386014 - Pden_3295 - heavy metal translocating P-type ATPase 458 69.08 0 461511..462173 + 220 119386015 - Pden_3296 - hypothetical protein 459 69.55 0 462189..464129 - 646 119386016 - Pden_3297 - heavy metal translocating P-type ATPase 460 66.67 0 464191..464571 - 126 119386017 - Pden_3298 - hypothetical protein 461 67.53 0 464586..465278 - 230 119386018 - Pden_3299 - ABC transporter related 462 67.64 0 465284..466417 - 377 119386019 - Pden_3300 - hypothetical protein 463 70.77 0 466414..467559 - 381 119386020 - Pden_3301 - RND family efflux transporter MFP subunit 464 66.05 0 467563..468210 - 215 119386021 - Pden_3302 - TetR family transcriptional regulator 465 61.51 -1 470021..471202 + 393 119386022 - Pden_3305 - filamentation induced by cAMP protein Fic 466 63.43 0 471348..471779 - 143 119386023 - Pden_3306 - hypothetical protein 467 67.06 0 471872..472897 - 341 119386024 - Pden_3307 - transposase IS66 468 63.28 0 472952..473305 - 117 119386025 - Pden_3308 - IS66 Orf2 family protein 469 66.07 0 473299..473631 - 110 119386026 - Pden_3309 - transposase IS3/IS911 family protein 470 63.64 0 473734..474063 + 109 119386027 - Pden_3310 - hypothetical protein 471 62.63 0 474208..475173 - 321 119386028 - Pden_3311 - response regulator receiver protein 472 62.48 -1 475170..476507 - 445 119386029 - Pden_3312 - integral membrane sensor signal transduction histidine kinase 473 59.21 -1 476504..476986 - 160 119386030 - Pden_3313 - hypothetical protein 474 62.50 -1 477123..477602 + 159 119386031 - Pden_3314 - hypothetical protein 475 60.21 -1 477604..478176 + 190 119386032 - Pden_3315 - hypothetical protein 476 63.12 0 478185..478664 + 159 119386033 - Pden_3316 - hypothetical protein 477 63.07 0 478661..479188 + 175 119386034 - Pden_3317 - hypothetical protein 478 62.29 -1 479185..479709 + 174 119386035 - Pden_3318 - hypothetical protein 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0