version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 314 69.44 0 326590..327381 - 263 119385871 - Pden_3149 - phytanoyl-CoA dioxygenase 315 65.79 0 327688..328374 - 228 119385872 - Pden_3150 - protein of unknown function DUF899, thioredoxin family protein 316 75.95 +2 328642..329901 + 419 119385873 - Pden_3151 - tetratricopeptide TPR_4 317 69.31 0 329911..330552 + 213 119385874 - Pden_3152 - hypothetical protein 318 65.69 0 330661..331068 + 135 119385875 - Pden_3153 - cupin 2 domain-containing protein 319 69.78 0 331073..331906 + 277 119385876 - Pden_3154 - aminoglycoside N(3')-acetyltransferase 320 66.21 0 331919..332353 + 144 119385877 - Pden_3155 - methyltransferase type 12 321 62.89 0 332449..332766 + 105 119385878 - Pden_3156 - histone family protein nucleoid-structuring protein H-NS 322 66.67 0 332782..333399 + 205 119385879 - Pden_3157 - plasmid pRiA4b ORF-3 family protein 323 63.33 0 333475..333834 + 119 119385880 - Pden_3158 - hypothetical protein 324 63.83 0 333864..334322 + 152 119385881 - Pden_3159 - gentamicin 3'-N-acetyltransferase 325 62.59 -1 334803..335831 - 342 119385882 - Pden_3160 - transposase IS116/IS110/IS902 family protein 326 63.27 0 335940..336263 + 107 119385883 - Pden_3161 - transposase IS3/IS911 family protein 327 63.02 0 336263..337168 + 301 119385884 - Pden_3162 - integrase catalytic subunit 328 65.23 0 337267..337683 + 138 119385885 - Pden_3163 - hypothetical protein 329 66.37 0 338133..338810 + 225 119385886 - Pden_3164 - DNA methylase N-4/N-6 domain-containing protein 330 67.33 0 338882..339184 + 100 119385887 - Pden_3165 - hypothetical protein 331 63.64 0 339330..340253 + 307 119385888 - Pden_3166 - hypothetical protein 332 66.91 0 341031..341438 + 135 119385889 - Pden_3167 - single-strand binding protein 333 62.25 -1 341929..342132 + 67 119385890 - Pden_3168 - hypothetical protein 334 63.89 0 342234..342449 + 71 119385891 - Pden_3169 - hypothetical protein 335 65.92 0 342529..342795 + 88 119385892 - Pden_3170 - hypothetical protein 336 61.24 -1 342906..343163 - 85 119385893 - Pden_3171 - XRE family transcriptional regulator 337 61.74 -1 343217..343663 + 148 119385894 - Pden_3172 - hypothetical protein 338 63.75 0 343788..344096 + 102 119385895 - Pden_3173 - hypothetical protein 339 69.76 0 344116..344568 + 150 119385896 - Pden_3174 - hypothetical protein 340 65.33 0 344690..345589 + 299 119385897 - Pden_3175 - hypothetical protein 341 66.92 0 345773..346171 - 132 119385898 - Pden_3176 - hypothetical protein 342 65.26 0 346168..346452 - 94 119385899 - Pden_3177 - AbrB family transcriptional regulator 343 71.99 +1 346610..346891 + 93 119385900 - Pden_3178 - putative transcriptional regulator 344 63.97 0 346902..348014 + 370 119385901 - Pden_3179 - replication protein A 345 59.74 -1 348011..348313 + 100 119385902 - Pden_3180 - hypothetical protein 346 66.87 0 348310..348798 + 162 119385903 - Pden_3181 - hypothetical protein 347 67.74 0 348795..350282 + 495 119385904 - Pden_3182 - C-5 cytosine-specific DNA methylase 348 69.65 0 350279..350881 + 200 119385905 - Pden_3183 - conjugal transfer protein precursor 349 65.78 0 350878..351216 + 112 119385906 - Pden_3184 - hypothetical protein 350 70.51 0 351220..352026 + 268 119385907 - Pden_3185 - lytic transglycosylase, catalytic 351 68.21 0 352076..352657 + 193 119385908 - Pden_3186 - hypothetical protein 352 69.57 0 352908..354701 + 597 119385909 - Pden_3187 - hypothetical protein 353 67.01 0 354719..356728 + 669 119385910 - Pden_3188 - TRAG family protein 354 68.20 0 356759..357280 + 173 119385911 - Pden_3189 - hypothetical protein 355 62.26 -1 357306..357827 - 173 119385912 - Pden_3190 - hypothetical protein 356 52.92 -2 357824..358063 - 79 119385913 - Pden_3191 - hypothetical protein 357 67.84 0 358045..358470 - 141 119385914 - Pden_3192 - PilT domain-containing protein 358 67.05 0 358467..358730 - 87 119385915 - Pden_3193 - putative plasmid stabilization protein 359 68.06 0 359010..360014 + 334 119385916 - Pden_3194 - type II secretion system protein E 360 63.36 0 360011..360343 + 110 119385917 - Pden_3195 - conjugal transfer protein TrbC 361 68.79 0 360343..360624 + 93 119385918 - Pden_3196 - conjugal transfer protein TrbB 362 67.92 0 360637..363270 + 877 119385919 - Pden_3197 - AAA ATPase 363 67.29 0 363267..364064 + 265 119385920 - Pden_3198 - conjugal transfer protein TrbJ 364 69.44 0 364085..364372 + 95 119385921 - Pden_3199 - hypothetical protein 365 69.69 0 364380..365702 + 440 119385922 - Pden_3200 - TrbL/VirB6 plasmid conjugal transfer protein 366 67.10 0 365699..366388 + 229 119385923 - Pden_3201 - conjugal transfer protein 367 67.62 0 366385..367428 + 347 119385924 - Pden_3202 - conjugal transfer protein TrbG/VirB9/CagX 368 70.35 0 367428..368594 + 388 119385925 - Pden_3203 - conjugation TrbI family protein 369 66.67 0 368591..368845 + 84 119385926 - Pden_3204 - hypothetical protein 370 63.60 0 368847..369791 - 314 119385927 - Pden_3205 - LysR family transcriptional regulator 371 54.29 -2 369824..370534 - 236 119385928 - Pden_3206 - regulatory protein GntR, HTH 372 60.98 -1 370806..372089 - 427 119385929 - Pden_3207 - TRAP dicarboxylate transporter, DctM subunit 373 58.15 -2 372102..372653 - 183 119385930 - Pden_3208 - hypothetical protein 374 60.06 -1 372650..373663 - 337 119385931 - Pden_3209 - TRAP dicarboxylate transporter- DctP subunit 375 65.14 0 374073..375254 + 393 119385932 - Pden_3210 - iron-containing alcohol dehydrogenase 376 64.02 0 375275..376708 + 477 119385933 - Pden_3211 - aldehyde dehydrogenase 377 61.88 -1 376719..377762 + 347 119385934 - Pden_3212 - alcohol dehydrogenase 378 64.80 0 377773..378576 + 267 119385935 - Pden_3213 - enoyl-CoA hydratase/isomerase 379 62.60 -1 378583..378828 + 81 119385936 - Pden_3214 - hypothetical protein 380 61.87 -1 378959..379333 - 124 119385937 - Pden_3215 - carboxymuconolactone decarboxylase 381 63.12 0 379406..380335 - 309 119385938 - Pden_3216 - 3-hydroxyisobutyrate dehydrogenase 382 58.92 -1 380455..380880 - 141 119385939 - Pden_3217 - cupin 2 domain-containing protein 383 59.96 -1 380901..381794 - 297 119385940 - Pden_3218 - beta-lactamase domain-containing protein 384 59.38 -1 381847..382848 - 333 119385941 - Pden_3219 - TRAP dicarboxylate transporter- DctP subunit 385 57.81 -2 382965..383393 - 142 119385942 - Pden_3220 - thioesterase superfamily protein 386 61.43 -1 383452..384405 - 317 119385943 - Pden_3221 - hypothetical protein 387 61.91 -1 384445..385959 - 504 119385944 - Pden_3222 - hypothetical protein 388 59.33 -1 385965..386414 - 149 119385945 - Pden_3223 - hypothetical protein 389 63.02 0 386490..388244 - 584 119385946 - Pden_3224 - acyl-CoA dehydrogenase domain-containing protein 390 64.40 0 388262..390559 - 765 119385947 - Pden_3225 - 3-hydroxyacyl-CoA dehydrogenase, NAD-binding 391 63.81 0 390556..391677 - 373 119385948 - Pden_3226 - acetyl-CoA acetyltransferases 392 59.29 -1 391797..393029 - 410 119385949 - Pden_3227 - L-carnitine dehydratase/bile acid-inducible protein F 393 62.73 0 393111..394610 - 499 119385950 - Pden_3228 - aldehyde dehydrogenase 394 60.49 -1 394918..396066 + 382 119385951 - Pden_3229 - hypothetical protein 395 63.63 0 396188..397768 + 526 119385952 - Pden_3230 - AMP-dependent synthetase and ligase 396 56.02 -2 397808..398662 + 284 119385953 - Pden_3231 - IclR family transciptional regulator 397 62.24 -1 398991..399803 - 270 119385954 - Pden_3232 - histidine kinase 398 61.65 -1 400008..400685 - 225 119385955 - Pden_3233 - transposase IS116/IS110/IS902 family protein 399 53.33 -2 400725..401084 - 119 119385956 - Pden_3234 - hypothetical protein 400 64.97 0 401247..402308 + 353 119385957 - Pden_3235 - hypothetical protein 401 67.18 0 402410..403183 + 257 119385958 - Pden_3236 - NmrA family protein 402 63.53 0 403185..404078 - 297 119385959 - Pden_3237 - LysR family transcriptional regulator 403 59.92 -1 404224..404697 + 157 119385960 - Pden_3238 - hypothetical protein 404 61.63 -1 404744..405418 + 224 119385961 - Pden_3239 - hypothetical protein 405 67.17 0 405618..406619 + 333 119385962 - Pden_3240 - hypothetical protein 406 64.21 0 406649..407218 + 189 119385963 - Pden_3241 - twin-arginine translocation pathway signal 407 61.08 -1 407264..408247 + 327 119385964 - Pden_3242 - aldo/keto reductase 408 66.07 0 408296..409462 + 388 119385965 - Pden_3243 - aldo/keto reductase 409 65.86 0 409473..410462 + 329 119385966 - Pden_3244 - aldo/keto reductase 410 62.51 -1 410491..411477 + 328 119385967 - Pden_3245 - hypothetical protein 411 66.67 0 411556..411753 + 65 119385968 - Pden_3246 - hypothetical protein 412 63.23 0 411867..412448 + 193 119385969 - Pden_3247 - transposase 413 63.02 0 412476..413243 - 255 119385970 - Pden_3248 - regulatory proteins, IclR 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0