IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.77   STD DEV: 4.14
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097
1662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
131	 67.73	0	131915..133708	+	597	119385688	-	Pden_2963	-	integral membrane sensor signal transduction histidine kinase
132	 66.37	0	133728..135053	+	441	119385689	-	Pden_2964	-	two component, sigma54 specific, Fis family transcriptional regulator
133	 68.31	0	135504..138113	+	869	119385690	-	Pden_2965	-	ribonuclease
134	 68.41	0	138190..138933	+	247	119385691	-	Pden_2966	-	cytochrome c biogenesis protein, transmembrane region
135	 69.91	0	138930..139730	-	266	119385692	-	Pden_2967	-	enoyl-CoA hydratase/isomerase
136	 67.85	0	139815..140237	+	140	119385693	-	Pden_2968	-	hypothetical protein
137	 62.15	-1	140388..140852	+	154	119385694	rplM	Pden_2969	-	50S ribosomal protein L13
138	 67.50	0	140856..141335	+	159	119385695	rpsI	Pden_2970	-	30S ribosomal protein S9
139	 59.30	-1	141439..141723	+	94	119385696	-	Pden_2971	-	hypothetical protein
140	 61.97	-1	147370..148221	-	283	119385697	-	Pden_2972	-	hypothetical protein
141	 59.84	-1	148499..150403	-	634	119385698	-	Pden_2974	-	helicase domain-containing protein
142	 63.49	0	150397..150711	-	104	119385699	-	Pden_2975	-	hypothetical protein
143	 62.57	-1	150708..151268	-	186	119385700	-	Pden_2976	-	transposase, IS4 family protein
144	 68.34	0	151529..153085	-	518	119385701	-	Pden_2977	-	TonB-dependent receptor, plug
145	 71.53	+1	153212..154198	-	328	119385702	-	Pden_2978	-	putative FecR
146	 67.45	0	154267..154779	-	170	119385703	-	Pden_2979	-	ECF subfamily RNA polymerase sigma-24 factor
147	 66.07	0	155557..156567	+	336	119385704	-	Pden_2980	-	periplasmic binding protein
148	 69.11	0	156564..157625	+	353	119385705	-	Pden_2981	-	transport system permease protein
149	 70.33	0	157622..158386	+	254	119385706	-	Pden_2982	-	ABC transporter related
150	 64.35	0	158387..158818	+	143	119385707	-	Pden_2983	-	pseudoazurin
151	 69.01	0	158815..159498	+	227	119385708	-	Pden_2984	-	methyltransferase type 11
152	 69.33	0	159505..159954	-	149	119385709	-	Pden_2985	-	DNA-binding protein
153	 65.45	0	159971..160462	+	163	119385710	-	Pden_2986	-	PEP phosphonomutase and related enzymes-like
154	 71.93	+1	160576..161202	-	208	119385711	-	Pden_2987	-	anaerobic ribonucleoside-triphosphate reductase activating protein
155	 62.30	-1	161195..161377	-	60	119385712	-	Pden_2988	-	hypothetical protein
156	 64.20	0	161392..163137	-	581	119385713	-	Pden_2989	-	anaerobic ribonucleoside triphosphate reductase
157	 63.99	0	163940..164611	-	223	119385714	-	Pden_2990	-	two component LuxR family transcriptional regulator
158	 69.96	0	164596..166023	-	475	119385715	-	Pden_2991	-	integral membrane sensor signal transduction histidine kinase
159	 68.39	0	166020..166484	-	154	119385716	-	Pden_2992	-	hypothetical protein
160	 64.98	0	166833..168731	+	632	119385717	-	Pden_2993	-	Pyrrolo-quinoline quinone
161	 63.18	0	168805..169635	+	276	119385718	-	Pden_2994	-	extracellular solute-binding protein
162	 63.11	0	169646..170179	+	177	119385719	-	Pden_2995	-	cytochrome c, class I
163	 62.18	-1	170234..170545	+	103	119385720	-	Pden_2996	-	methanol dehydrogenase, beta subunit
164	 70.78	0	170607..171626	+	339	119385721	-	Pden_2997	-	ATPase
165	 73.80	+1	171623..172477	+	284	119385722	-	Pden_2998	-	hypothetical protein
166	 71.77	+1	172474..173277	+	267	119385723	-	Pden_2999	-	MxaA protein, putative
167	 73.41	+1	173274..174281	+	335	119385724	-	Pden_3000	-	von Willebrand factor, type A
168	 74.09	+1	174278..174829	+	183	119385725	-	Pden_3001	-	hypothetical protein
169	 70.90	0	174955..175758	+	267	119385726	-	Pden_3002	-	von Willebrand factor, type A
170	 68.16	0	175755..176288	+	177	119385727	-	Pden_3003	-	MxaD protein, putative
171	 61.48	-1	176306..177154	-	282	119385728	-	Pden_3004	-	peptidase S15
172	 47.72	-2	177218..177655	-	145	119385729	-	Pden_3005	-	hypothetical protein
173	 48.73	-2	177706..178218	-	170	119385730	-	Pden_3006	-	hypothetical protein
174	 64.84	0	178458..180536	-	692	119385731	-	Pden_3007	-	TonB-dependent siderophore receptor
175	 69.48	0	180896..182563	+	555	119385732	-	Pden_3008	-	AMP-dependent synthetase and ligase
176	 74.78	+1	182560..183015	+	151	119385733	-	Pden_3009	-	chorismate mutase related enzymes
177	 70.96	+1	182950..183927	-	325	119385734	-	Pden_3010	-	periplasmic binding protein
178	 73.53	+1	183941..184975	-	344	119385735	-	Pden_3011	-	transport system permease protein
179	 72.97	+1	184972..185970	-	332	119385736	-	Pden_3012	-	transport system permease protein
180	 70.64	0	185967..186746	-	259	119385737	-	Pden_3013	-	ABC transporter related
181	 74.94	+1	186830..188014	+	394	119385738	-	Pden_3014	-	NtaA/SnaA/SoxA family monooxygenase
182	 73.16	+1	187954..193665	-	1903	119385739	-	Pden_3015	-	amino acid adenylation domain-containing protein
183	 62.65	0	193771..194019	+	82	119385740	-	Pden_3016	-	phosphopantetheine-binding
184	 68.05	0	194271..196073	+	600	119385741	-	Pden_3017	-	ABC transporter related
185	 67.67	0	196070..197857	+	595	119385742	-	Pden_3018	-	ABC transporter related
186	 62.59	-1	198236..198676	-	146	119385743	-	Pden_3019	-	signal-transduction protein
187	 68.23	0	198689..199072	-	127	119385744	-	Pden_3020	-	succinate dehydrogenase, cytochrome b subunit
188	 65.08	0	199069..199446	-	125	119385745	-	Pden_3021	-	succinate dehydrogenase, cytochrome b subunit
189	 61.79	-1	199462..199830	-	122	119385746	-	Pden_3022	-	succinate dehydrogenase (ubiquinone)
190	 68.65	0	199948..200400	-	150	119385747	-	Pden_3023	-	hypothetical protein
191	 70.09	0	200422..200859	-	145	119385748	-	Pden_3024	-	BadM/Rrf2 family transcriptional regulator
192	 67.86	0	201003..201674	+	223	119385749	-	Pden_3025	-	hypothetical protein
193	 69.14	0	201788..202111	+	107	119385750	-	Pden_3026	-	hypothetical protein
194	 67.26	0	202131..202469	+	112	119385751	-	Pden_3027	-	alkylhydroperoxidase
195	 61.04	-1	202683..204353	+	556	119385752	-	Pden_3028	-	cytochrome-c oxidase
196	 61.29	-1	204776..206932	+	718	119385753	-	Pden_3029	-	TonB-dependent siderophore receptor
197	 62.91	0	206944..207768	+	274	119385754	-	Pden_3030	-	methyltransferase type 12
198	 64.30	0	207773..208786	+	337	119385755	-	Pden_3031	-	transport system permease protein
199	 68.09	0	208783..209553	+	256	119385756	-	Pden_3032	-	ABC transporter related
200	 62.52	-1	209564..210601	+	345	119385757	-	Pden_3033	-	periplasmic binding protein
201	 54.23	-2	210616..210993	+	125	119385758	-	Pden_3034	-	hypothetical protein
202	 67.31	0	211066..211221	-	51	119385759	-	Pden_3035	-	butyrate-acetoacetate CoA-transferase
203	 65.26	0	211416..212906	+	496	119385760	-	Pden_3036	-	sulphate transporter
204	 68.25	0	213391..214716	-	441	119385761	-	Pden_3037	-	Cl- channel, voltage-gated family protein
205	 65.17	0	214845..216509	-	554	119385762	-	Pden_3038	-	choline/carnitine/betaine transporter
206	 59.89	-1	216885..218168	+	427	119385763	-	Pden_3039	-	hypothetical protein
207	 65.94	0	218003..218413	-	136	119385764	-	Pden_3040	-	ISSpo9, transposase
208	 62.86	0	218479..218688	-	69	119385765	-	Pden_3041	-	hypothetical protein
209	 66.17	0	221466..222683	-	405	119385766	-	Pden_3044	-	major facilitator transporter
210	 64.56	0	222708..223940	-	410	119385767	-	Pden_3045	-	major facilitator transporter
211	 67.61	0	224252..225097	+	281	119385768	-	Pden_3046	-	alcohol dehydrogenase
212	 63.17	0	225122..225607	-	161	119385769	-	Pden_3047	-	MarR family transcriptional regulator
213	 67.85	0	225654..227174	+	506	119385770	-	Pden_3048	-	hypothetical protein
214	 64.89	0	228088..229941	+	617	119385771	-	Pden_3049	-	transketolase, central region
215	 60.32	-1	229941..230696	+	251	119385772	-	Pden_3050	-	regulatory proteins, IclR
216	 58.15	-2	230709..231107	+	132	119385773	-	Pden_3051	-	endoribonuclease L-PSP
217	 64.01	0	231104..232495	+	463	119385774	-	Pden_3052	-	aminotransferase class-III
218	 65.62	0	232485..233912	+	475	119385775	-	Pden_3053	-	amidase
219	 62.53	-1	233971..235251	+	426	119385776	-	Pden_3054	-	branched-chain amino acid ABC transporter
220	 64.45	0	235254..236066	+	270	119385777	-	Pden_3055	-	ABC transporter related
221	 63.59	0	236056..236769	+	237	119385778	-	Pden_3056	-	ABC transporter related
222	 61.21	-1	236773..237651	+	292	119385779	-	Pden_3057	-	inner-membrane translocator
223	 59.00	-1	237648..238664	+	338	119385780	-	Pden_3058	-	inner-membrane translocator
224	 54.78	-2	238652..240073	+	473	119385781	-	Pden_3059	-	amidase
225	 55.56	-2	240368..240727	-	119	119385782	-	Pden_3060	-	hypothetical protein
226	 63.91	0	240832..242865	+	677	119385783	-	Pden_3061	-	outer membrane autotransporter
227	 57.17	-2	242895..243410	+	171	119385784	-	Pden_3062	-	hypothetical protein
228	 55.16	-2	243469..243720	-	83	119385785	-	Pden_3063	-	hypothetical protein
229	 54.36	-2	243789..245771	+	660	119385786	-	Pden_3064	-	hypothetical protein
230	 62.18	-1	246211..246522	-	103	119385787	-	Pden_3065	-	plasmid stabilization system protein
66.77	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.