version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1494 70.38 0 1529573..1531753 + 726 119387051 - Pden_4346 - ABC transporter related 1495 67.95 0 1532148..1533389 + 413 119387052 - Pden_4347 - radical SAM domain-containing protein 1496 69.93 0 1533474..1535159 + 561 119387053 - Pden_4348 - integral membrane sensor hybrid histidine kinase 1497 71.66 +1 1535156..1535776 - 206 119387054 - Pden_4349 - two component LuxR family transcriptional regulator 1498 65.92 0 1535955..1537556 - 533 119387055 mdoD Pden_4350 - glucan biosynthesis protein D 1499 65.44 0 1537755..1539227 - 490 119387056 - Pden_4351 - permease for cytosine/purines, uracil, thiamine, allantoin 1500 66.50 0 1539330..1541114 - 594 119387057 - Pden_4352 - 5-oxoprolinase (ATP-hydrolyzing) 1501 67.92 0 1541127..1543205 - 692 119387058 - Pden_4353 - 5-oxoprolinase (ATP-hydrolyzing) 1502 64.11 0 1543296..1544039 - 247 119387059 - Pden_4354 - N-carbamoylsarcosine amidase 1503 65.23 0 1544204..1545109 + 301 119387060 - Pden_4355 - LysR family transcriptional regulator 1504 68.31 0 1545213..1545761 - 182 119387061 - Pden_4356 - cytochrome B561 1505 73.58 +1 1545866..1546603 + 245 119387062 - Pden_4357 - CDP-alcohol phosphatidyltransferase 1506 72.31 +1 1546600..1548177 + 525 119387063 - Pden_4358 - sulfatase 1507 70.18 0 1548197..1549192 + 331 119387064 - Pden_4359 - twin-arginine translocation pathway signal 1508 75.58 +2 1549185..1549958 + 257 119387065 - Pden_4360 - ABC transporter related 1509 73.40 +1 1549955..1551499 + 514 119387066 - Pden_4361 - binding-protein-dependent transport systems inner membrane component 1510 70.86 0 1551496..1552545 + 349 119387067 - Pden_4362 - glycosyl transferase, group 1 1511 66.18 0 1552589..1553200 - 203 119387068 - Pden_4363 - deaminase-reductase domain-containing protein 1512 71.53 +1 1553381..1554592 - 403 119387069 - Pden_4364 - ThiJ/PfpI domain-containing protein 1513 69.13 0 1554607..1555581 + 324 119387070 - Pden_4365 - AraC family transcriptional regulator 1514 72.67 +1 1555817..1557880 - 687 119387071 - Pden_4366 - DEAD/DEAH box helicase domain-containing protein 1515 68.22 0 1558036..1558938 - 300 119387072 - Pden_4367 - LysR family transcriptional regulator 1516 65.91 0 1559113..1560438 + 441 119387073 - Pden_4368 - C4-dicarboxylate transporter DctA 1517 69.85 0 1560541..1561515 - 324 119387074 - Pden_4369 - LysR family transcriptional regulator 1518 71.47 +1 1561546..1562565 + 339 119387075 - Pden_4370 - hypothetical protein 1519 71.72 +1 1562633..1563463 + 276 119387076 - Pden_4371 - hypothetical protein 1520 74.22 +1 1563453..1563677 - 74 119387077 - Pden_4372 - hypothetical protein 1521 66.76 0 1563763..1566018 - 751 119387078 - Pden_4373 - TonB-dependent siderophore receptor 1522 60.61 -1 1566089..1566385 - 98 119387079 - Pden_4374 - hypothetical protein 1523 66.67 0 1566679..1566900 + 73 119387080 - Pden_4375 - glutaredoxin-like protein NrdH 1524 66.19 0 1566910..1567326 + 138 119387081 - Pden_4376 - NrdI protein 1525 63.00 0 1567308..1569434 + 708 119387082 - Pden_4377 - ribonucleoside-diphosphate reductase, alpha subunit 1526 62.53 -1 1569481..1570470 + 329 119387083 nrdF Pden_4378 - ribonucleotide-diphosphate reductase subunit beta 1527 68.52 0 1570467..1571435 - 322 119387084 - Pden_4379 - bile acid:sodium symporter 1528 71.07 +1 1571526..1572773 + 415 119387085 - Pden_4380 - GntR family transcriptional regulator 1529 69.09 0 1572796..1574571 - 591 119387086 - Pden_4381 - TrkA domain-containing protein 1530 67.19 0 1575068..1576975 + 635 119387087 - Pden_4382 - TonB-dependent receptor 1531 73.12 +1 1576969..1577805 + 278 119387088 - Pden_4383 - periplasmic binding protein 1532 73.49 +1 1577802..1578797 + 331 119387089 - Pden_4384 - transport system permease protein 1533 75.00 +1 1578800..1579555 + 251 119387090 - Pden_4385 - ABC transporter related 1534 71.36 +1 1579716..1581206 - 496 119387091 - Pden_4386 - glycerol kinase 1535 65.16 0 1581285..1583006 - 573 119387092 - Pden_4387 - ABC sugar (glycerol) transporter, periplasmic binding protein 1536 67.02 0 1583090..1583371 - 93 119387093 - Pden_4388 - hypothetical protein 1537 61.82 -1 1583515..1584318 - 267 119387094 - Pden_4389 - binding-protein-dependent transport systems inner membrane component 1538 62.27 -1 1584318..1585205 - 295 119387095 - Pden_4390 - binding-protein-dependent transport systems inner membrane component 1539 67.75 0 1585205..1586308 - 367 119387096 - Pden_4391 - ABC transporter related 1540 68.80 0 1586292..1587371 - 359 119387097 - Pden_4392 - ABC transporter related 1541 68.88 0 1587386..1588969 - 527 119387098 glpD Pden_4393 - glycerol-3-phosphate dehydrogenase 1542 58.88 -1 1589081..1589401 + 106 119387099 - Pden_4394 - hypothetical protein 1543 63.35 0 1589413..1590348 + 311 119387100 - Pden_4395 - sulfate adenylyltransferase subunit 2 1544 64.59 0 1590350..1592272 + 640 119387101 - Pden_4396 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein 1545 68.90 0 1592380..1593675 - 431 119387102 - Pden_4397 - hypothetical protein 1546 73.02 +1 1593677..1594810 - 377 119387103 - Pden_4398 - FAD linked oxidase domain-containing protein 1547 67.97 0 1594807..1596261 - 484 119387104 - Pden_4399 - FAD linked oxidase domain-containing protein 1548 70.99 +1 1596412..1597221 + 269 119387105 - Pden_4400 - GntR domain-containing protein 1549 68.74 0 1597278..1598243 - 321 119387106 - Pden_4401 - hypothetical protein 1550 66.00 0 1598266..1599774 - 502 119387107 - Pden_4402 - hypothetical protein 1551 67.10 0 1599787..1600251 - 154 119387108 - Pden_4403 - hypothetical protein 1552 67.38 0 1600310..1601284 - 324 119387109 - Pden_4404 - hypothetical protein 1553 69.64 0 1601479..1602825 - 448 119387110 - Pden_4405 - two component, sigma54 specific, Fis family transcriptional regulator 1554 71.54 +1 1602822..1604690 - 622 119387111 - Pden_4406 - histidine kinase 1555 66.82 0 1604791..1606113 - 440 119387112 - Pden_4407 - permease for cytosine/purines, uracil, thiamine, allantoin tranporter 1556 68.12 0 1606211..1608346 - 711 119387113 - Pden_4408 - 5-oxoprolinase (ATP-hydrolyzing) 1557 66.78 0 1608429..1610177 - 582 119387114 - Pden_4409 - 5-oxoprolinase (ATP-hydrolyzing) 1558 70.85 0 1610483..1611439 + 318 119387115 - Pden_4410 - helix-turn-helix domain-containing protein 1559 70.33 0 1611443..1612588 - 381 119387116 - Pden_4411 - L-carnitine dehydratase/bile acid-inducible protein F 1560 65.68 0 1612588..1613799 - 403 119387117 - Pden_4412 - acyl-CoA dehydrogenase domain-containing protein 1561 68.11 0 1613891..1614793 + 300 119387118 - Pden_4413 - LysR family transcriptional regulator 1562 69.71 0 1614817..1616097 - 426 119387119 - Pden_4414 - 4-aminobutyrate aminotransferase 1563 68.22 0 1616178..1616819 + 213 119387120 - Pden_4415 - XRE family transcriptional regulator 1564 69.53 0 1616830..1618263 - 477 119387121 - Pden_4416 - aldehyde dehydrogenase 1565 63.69 0 1618631..1620475 - 614 119387122 - Pden_4417 - GTP-binding protein LepA 1566 68.62 0 1620472..1621392 - 306 119387123 - Pden_4418 - hypothetical protein 1567 69.13 0 1621789..1622154 + 121 119387124 - Pden_4419 - hypothetical protein 1568 70.34 0 1622162..1622842 + 226 119387125 - Pden_4420 - silent information regulator protein Sir2 1569 71.13 +1 1623017..1624159 + 380 119387126 - Pden_4421 - phosphonate metabolism protein PhnM 1570 64.31 0 1624263..1624601 + 112 119387127 - Pden_4422 - alkylhydroperoxidase 1571 70.04 0 1624638..1626269 - 543 119387128 - Pden_4423 - phosphoglucomutase 1572 72.93 +1 1626280..1628115 - 611 119387129 - Pden_4424 - 4-alpha-glucanotransferase 1573 67.53 0 1628108..1630201 - 697 119387130 - Pden_4425 - glycogen debranching enzyme GlgX 1574 70.66 0 1630201..1631604 - 467 119387131 - Pden_4426 - glycogen/starch synthases, ADP-glucose type 1575 63.97 0 1631601..1632863 - 420 119387132 glgC Pden_4427 - glucose-1-phosphate adenylyltransferase 1576 65.66 0 1632907..1635102 - 731 119387133 - Pden_4428 - glycogen branching enzyme 1577 66.83 0 1635124..1637520 - 798 119387134 - Pden_4429 - glycogen/starch/alpha-glucan phosphorylases 1578 71.24 +1 1637767..1638618 - 283 119387135 - Pden_4430 - nicotinate-nucleotide pyrophosphorylase 1579 74.84 +1 1638615..1640180 - 521 119387136 - Pden_4431 - L-aspartate oxidase 1580 64.77 0 1640184..1641236 - 350 119387137 - Pden_4432 - quinolinate synthetase 1581 67.84 0 1641493..1642257 + 254 119387138 - Pden_4433 - regulatory proteins, IclR 1582 76.17 +2 1642263..1642841 - 192 119387139 - Pden_4434 - hypothetical protein 1583 70.78 0 1642850..1644016 - 388 119387140 - Pden_4435 - para-aminobenzoate synthase component I 1584 71.78 +1 1644105..1645277 - 390 119387141 - Pden_4436 - oxidoreductase domain-containing protein 1585 70.19 0 1645344..1646393 - 349 119387142 - Pden_4437 - oxidoreductase domain-containing protein 1586 66.41 0 1646393..1647178 - 261 119387143 - Pden_4438 - hypothetical protein 1587 67.17 0 1647221..1648222 - 333 119387144 - Pden_4439 - ABC transporter related 1588 62.83 0 1648226..1649059 - 277 119387145 - Pden_4440 - binding-protein-dependent transport systems inner membrane component 1589 64.59 0 1649056..1650018 - 320 119387146 - Pden_4441 - binding-protein-dependent transport systems inner membrane component 1590 66.28 0 1650089..1651366 - 425 119387147 - Pden_4442 - extracellular solute-binding protein 1591 68.40 0 1651797..1652429 - 210 119387148 - Pden_4443 - electron transport protein SCO1/SenC 1592 69.10 0 1652416..1653402 - 328 119387149 - Pden_4444 - hypothetical protein 1593 73.10 +1 1653460..1653879 - 139 119387150 - Pden_4445 - hypothetical protein 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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