version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1456 63.52 0 1487359..1488153 + 264 119387013 - Pden_4308 - YaeC family lipoprotein 1457 66.47 0 1488263..1489765 - 500 119387014 - Pden_4309 - Acetyl-CoA hydrolase 1458 69.82 0 1489904..1490347 - 147 119387015 - Pden_4310 - DoxX family protein 1459 69.08 0 1490452..1491363 + 303 119387016 - Pden_4311 - LysR family transcriptional regulator 1460 72.81 +1 1491326..1492726 - 466 119387017 - Pden_4312 - FAD linked oxidase domain-containing protein 1461 68.73 0 1492726..1493307 - 193 119387018 - Pden_4313 - GCN5-related N-acetyltransferase 1462 68.64 0 1493307..1494572 - 421 119387019 - Pden_4314 - peptidase M16 domain-containing protein 1463 66.09 0 1494569..1495957 - 462 119387020 - Pden_4315 - threonine synthase 1464 67.26 0 1495967..1496638 - 223 119387021 - Pden_4316 - SURF1 protein 1465 61.21 -1 1496704..1497528 - 274 119387022 - Pden_4317 - cytochrome c oxidase, subunit III 1466 63.78 0 1497563..1498150 - 195 119387023 - Pden_4318 - cytochrome C oxidase assembly protein 1467 70.29 0 1498147..1498422 - 91 119387024 - Pden_4319 - hypothetical protein 1468 66.12 0 1498416..1499333 - 305 119387025 - Pden_4320 - protoheme IX farnesyltransferase 1469 64.44 0 1499343..1500239 - 298 119387026 - Pden_4321 - cytochrome-c oxidase 1470 70.76 0 1500382..1501821 + 479 119387027 - Pden_4322 - peptidase U62, modulator of DNA gyrase 1471 71.60 +1 1501919..1503175 + 418 119387028 - Pden_4323 - DNA protecting protein DprA 1472 71.16 +1 1503467..1505602 + 711 119387029 - Pden_4324 - OmpA/MotB domain-containing protein 1473 67.83 0 1505694..1506383 - 229 119387030 - Pden_4325 - two component transcriptional regulator 1474 65.96 0 1506387..1507097 - 236 119387031 - Pden_4326 - phosphate uptake regulator, PhoU 1475 63.66 0 1507115..1507912 - 265 119387032 - Pden_4327 - phosphate ABC transporter, ATPase subunit 1476 67.49 0 1507933..1509276 - 447 119387033 - Pden_4328 - phosphate ABC transporter, inner membrane subunit PstA 1477 67.09 0 1509273..1510463 - 396 119387034 - Pden_4329 - phosphate ABC transporter, inner membrane subunit PstC 1478 65.31 0 1510524..1511552 - 342 119387035 - Pden_4330 - phosphate ABC transporter, periplasmic phosphate-binding protein 1479 57.20 -2 1511549..1511791 - 80 119387036 - Pden_4331 - hypothetical protein 1480 69.85 0 1511803..1512903 - 366 119387037 - Pden_4332 - chorismate synthase 1481 66.97 0 1513319..1513648 - 109 119387038 - Pden_4333 - hypothetical protein 1482 66.46 0 1513676..1515139 + 487 119387039 - Pden_4334 - amino acid permease-associated region 1483 68.24 0 1515167..1516498 - 443 119387040 - Pden_4335 - HlyD family type I secretion membrane fusion protein 1484 68.72 0 1516482..1518473 - 663 119387041 - Pden_4336 - type I secretion system ATPase 1485 67.21 0 1518470..1520503 - 677 119387042 - Pden_4337 - hypothetical protein 1486 68.76 0 1520613..1522424 - 603 119387043 - Pden_4338 - PE-PGRS family protein 1487 61.97 -1 1523038..1523739 + 233 119387044 - Pden_4339 - response regulator receiver protein 1488 66.67 0 1523736..1524257 + 173 119387045 - Pden_4340 - hypothetical protein 1489 68.19 0 1524344..1525063 - 239 119387046 - Pden_4341 - sulfate ABC transporter, ATPase subunit 1490 69.35 0 1525080..1525973 - 297 119387047 - Pden_4342 - sulfate ABC transporter, inner membrane subunit CysW 1491 65.95 0 1525966..1526805 - 279 119387048 - Pden_4343 - sulfate ABC transporter, inner membrane subunit CysT 1492 65.86 0 1526809..1527795 - 328 119387049 - Pden_4344 - sulfate ABC transporter, periplasmic sulfate-binding protein 1493 70.98 +1 1528285..1529583 + 432 119387050 - Pden_4345 - secretion protein HlyD family protein 1494 70.38 0 1529573..1531753 + 726 119387051 - Pden_4346 - ABC transporter related 1495 67.95 0 1532148..1533389 + 413 119387052 - Pden_4347 - radical SAM domain-containing protein 1496 69.93 0 1533474..1535159 + 561 119387053 - Pden_4348 - integral membrane sensor hybrid histidine kinase 1497 71.66 +1 1535156..1535776 - 206 119387054 - Pden_4349 - two component LuxR family transcriptional regulator 1498 65.92 0 1535955..1537556 - 533 119387055 mdoD Pden_4350 - glucan biosynthesis protein D 1499 65.44 0 1537755..1539227 - 490 119387056 - Pden_4351 - permease for cytosine/purines, uracil, thiamine, allantoin 1500 66.50 0 1539330..1541114 - 594 119387057 - Pden_4352 - 5-oxoprolinase (ATP-hydrolyzing) 1501 67.92 0 1541127..1543205 - 692 119387058 - Pden_4353 - 5-oxoprolinase (ATP-hydrolyzing) 1502 64.11 0 1543296..1544039 - 247 119387059 - Pden_4354 - N-carbamoylsarcosine amidase 1503 65.23 0 1544204..1545109 + 301 119387060 - Pden_4355 - LysR family transcriptional regulator 1504 68.31 0 1545213..1545761 - 182 119387061 - Pden_4356 - cytochrome B561 1505 73.58 +1 1545866..1546603 + 245 119387062 - Pden_4357 - CDP-alcohol phosphatidyltransferase 1506 72.31 +1 1546600..1548177 + 525 119387063 - Pden_4358 - sulfatase 1507 70.18 0 1548197..1549192 + 331 119387064 - Pden_4359 - twin-arginine translocation pathway signal 1508 75.58 +2 1549185..1549958 + 257 119387065 - Pden_4360 - ABC transporter related 1509 73.40 +1 1549955..1551499 + 514 119387066 - Pden_4361 - binding-protein-dependent transport systems inner membrane component 1510 70.86 0 1551496..1552545 + 349 119387067 - Pden_4362 - glycosyl transferase, group 1 1511 66.18 0 1552589..1553200 - 203 119387068 - Pden_4363 - deaminase-reductase domain-containing protein 1512 71.53 +1 1553381..1554592 - 403 119387069 - Pden_4364 - ThiJ/PfpI domain-containing protein 1513 69.13 0 1554607..1555581 + 324 119387070 - Pden_4365 - AraC family transcriptional regulator 1514 72.67 +1 1555817..1557880 - 687 119387071 - Pden_4366 - DEAD/DEAH box helicase domain-containing protein 1515 68.22 0 1558036..1558938 - 300 119387072 - Pden_4367 - LysR family transcriptional regulator 1516 65.91 0 1559113..1560438 + 441 119387073 - Pden_4368 - C4-dicarboxylate transporter DctA 1517 69.85 0 1560541..1561515 - 324 119387074 - Pden_4369 - LysR family transcriptional regulator 1518 71.47 +1 1561546..1562565 + 339 119387075 - Pden_4370 - hypothetical protein 1519 71.72 +1 1562633..1563463 + 276 119387076 - Pden_4371 - hypothetical protein 1520 74.22 +1 1563453..1563677 - 74 119387077 - Pden_4372 - hypothetical protein 1521 66.76 0 1563763..1566018 - 751 119387078 - Pden_4373 - TonB-dependent siderophore receptor 1522 60.61 -1 1566089..1566385 - 98 119387079 - Pden_4374 - hypothetical protein 1523 66.67 0 1566679..1566900 + 73 119387080 - Pden_4375 - glutaredoxin-like protein NrdH 1524 66.19 0 1566910..1567326 + 138 119387081 - Pden_4376 - NrdI protein 1525 63.00 0 1567308..1569434 + 708 119387082 - Pden_4377 - ribonucleoside-diphosphate reductase, alpha subunit 1526 62.53 -1 1569481..1570470 + 329 119387083 nrdF Pden_4378 - ribonucleotide-diphosphate reductase subunit beta 1527 68.52 0 1570467..1571435 - 322 119387084 - Pden_4379 - bile acid:sodium symporter 1528 71.07 +1 1571526..1572773 + 415 119387085 - Pden_4380 - GntR family transcriptional regulator 1529 69.09 0 1572796..1574571 - 591 119387086 - Pden_4381 - TrkA domain-containing protein 1530 67.19 0 1575068..1576975 + 635 119387087 - Pden_4382 - TonB-dependent receptor 1531 73.12 +1 1576969..1577805 + 278 119387088 - Pden_4383 - periplasmic binding protein 1532 73.49 +1 1577802..1578797 + 331 119387089 - Pden_4384 - transport system permease protein 1533 75.00 +1 1578800..1579555 + 251 119387090 - Pden_4385 - ABC transporter related 1534 71.36 +1 1579716..1581206 - 496 119387091 - Pden_4386 - glycerol kinase 1535 65.16 0 1581285..1583006 - 573 119387092 - Pden_4387 - ABC sugar (glycerol) transporter, periplasmic binding protein 1536 67.02 0 1583090..1583371 - 93 119387093 - Pden_4388 - hypothetical protein 1537 61.82 -1 1583515..1584318 - 267 119387094 - Pden_4389 - binding-protein-dependent transport systems inner membrane component 1538 62.27 -1 1584318..1585205 - 295 119387095 - Pden_4390 - binding-protein-dependent transport systems inner membrane component 1539 67.75 0 1585205..1586308 - 367 119387096 - Pden_4391 - ABC transporter related 1540 68.80 0 1586292..1587371 - 359 119387097 - Pden_4392 - ABC transporter related 1541 68.88 0 1587386..1588969 - 527 119387098 glpD Pden_4393 - glycerol-3-phosphate dehydrogenase 1542 58.88 -1 1589081..1589401 + 106 119387099 - Pden_4394 - hypothetical protein 1543 63.35 0 1589413..1590348 + 311 119387100 - Pden_4395 - sulfate adenylyltransferase subunit 2 1544 64.59 0 1590350..1592272 + 640 119387101 - Pden_4396 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein 1545 68.90 0 1592380..1593675 - 431 119387102 - Pden_4397 - hypothetical protein 1546 73.02 +1 1593677..1594810 - 377 119387103 - Pden_4398 - FAD linked oxidase domain-containing protein 1547 67.97 0 1594807..1596261 - 484 119387104 - Pden_4399 - FAD linked oxidase domain-containing protein 1548 70.99 +1 1596412..1597221 + 269 119387105 - Pden_4400 - GntR domain-containing protein 1549 68.74 0 1597278..1598243 - 321 119387106 - Pden_4401 - hypothetical protein 1550 66.00 0 1598266..1599774 - 502 119387107 - Pden_4402 - hypothetical protein 1551 67.10 0 1599787..1600251 - 154 119387108 - Pden_4403 - hypothetical protein 1552 67.38 0 1600310..1601284 - 324 119387109 - Pden_4404 - hypothetical protein 1553 69.64 0 1601479..1602825 - 448 119387110 - Pden_4405 - two component, sigma54 specific, Fis family transcriptional regulator 1554 71.54 +1 1602822..1604690 - 622 119387111 - Pden_4406 - histidine kinase 1555 66.82 0 1604791..1606113 - 440 119387112 - Pden_4407 - permease for cytosine/purines, uracil, thiamine, allantoin tranporter 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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