version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1412 69.76 0 1434201..1436009 - 602 119386969 - Pden_4264 - Fis family GAF modulated sigma54 specific transcriptional regulator 1413 65.50 0 1436146..1436916 - 256 119386970 - Pden_4265 - GntR domain-containing protein 1414 68.96 0 1436925..1438409 - 494 119386971 - Pden_4266 - MlrC domain-containing protein 1415 70.75 0 1438406..1439680 - 424 119386972 - Pden_4267 - amidase 1416 67.38 0 1439677..1440381 - 234 119386973 - Pden_4268 - ABC transporter related 1417 69.14 0 1440378..1441145 - 255 119386974 - Pden_4269 - ABC transporter related 1418 66.05 0 1441147..1442124 - 325 119386975 - Pden_4270 - inner-membrane translocator 1419 67.20 0 1442121..1443065 - 314 119386976 - Pden_4271 - inner-membrane translocator 1420 65.84 0 1443040..1444251 - 403 119386977 - Pden_4272 - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 1421 65.29 0 1444586..1445965 + 459 119386978 - Pden_4273 - aminotransferase class-III 1422 70.53 0 1446028..1447527 + 499 119386979 - Pden_4274 - GntR family transcriptional regulator 1423 73.15 +1 1447511..1448467 - 318 119386980 - Pden_4275 - phosphate acetyltransferase 1424 72.27 +1 1448480..1449496 - 338 119386981 - Pden_4276 - hypothetical protein 1425 68.13 0 1449770..1451551 - 593 119386982 - Pden_4277 - sulfoacetaldehyde acetyltransferase 1426 69.35 0 1451564..1453204 - 546 119386983 - Pden_4278 - glucose-methanol-choline oxidoreductase 1427 64.60 0 1453293..1454600 - 435 119386984 - Pden_4279 - major facilitator transporter 1428 65.49 0 1454824..1455588 + 254 119386985 - Pden_4280 - regulatory proteins, IclR 1429 70.35 0 1455734..1456684 - 316 119386986 - Pden_4281 - oligopeptide/dipeptide ABC transporter, ATPase subunit 1430 69.28 0 1456681..1457673 - 330 119386987 - Pden_4282 - oligopeptide/dipeptide ABC transporter, ATPase subunit 1431 67.58 0 1457677..1458555 - 292 119386988 - Pden_4283 - binding-protein-dependent transport systems inner membrane component 1432 67.80 0 1458559..1459530 - 323 119386989 - Pden_4284 - binding-protein-dependent transport systems inner membrane component 1433 66.16 0 1459549..1461141 - 530 119386990 - Pden_4285 - extracellular solute-binding protein 1434 66.77 0 1461247..1462191 - 314 119386991 - Pden_4286 - LysR family transcriptional regulator 1435 69.05 0 1462297..1463931 + 544 119386992 - Pden_4287 - amidohydrolase 3 1436 69.85 0 1463935..1464846 + 303 119386993 - Pden_4288 - cobalamin synthesis protein, P47K 1437 77.22 +2 1465112..1465765 + 217 119386994 - Pden_4289 - hypothetical protein 1438 75.94 +2 1465671..1467191 + 506 119386995 - Pden_4290 - hypothetical protein 1439 67.56 0 1467191..1470424 + 1077 119386996 - Pden_4291 - DNA polymerase III, alpha subunit 1440 51.79 -2 1470491..1470658 - 55 119386997 rpmG Pden_4292 - 50S ribosomal protein L33 1441 71.31 +1 1471303..1471668 - 121 119386998 - Pden_4293 - HxlR family transcriptional regulator 1442 71.17 +1 1471754..1472596 + 280 119386999 - Pden_4294 - NmrA family protein 1443 66.17 0 1472593..1474992 - 799 119387000 - Pden_4295 - UvrD/REP helicase 1444 60.26 -1 1475039..1475350 - 103 119387001 - Pden_4296 - hypothetical protein 1445 65.42 0 1475351..1476316 - 321 119387002 - Pden_4297 - putative GTP cyclohydrolase 1446 66.83 0 1476404..1477600 - 398 119387003 - Pden_4298 - O-succinylhomoserine sulfhydrylase 1447 65.65 0 1477671..1478360 - 229 119387004 - Pden_4299 - intracellular septation protein A 1448 71.25 +1 1478374..1479465 - 363 119387005 - Pden_4300 - hypothetical protein 1449 65.65 0 1479732..1482491 + 919 119387006 - Pden_4301 - aconitate hydratase 1450 66.82 0 1482658..1483326 - 222 119387007 - Pden_4302 - hypothetical protein 1451 64.73 0 1483465..1484085 - 206 119387008 rpsD Pden_4303 - 30S ribosomal protein S4 1452 65.05 0 1484284..1484655 + 123 119387009 - Pden_4304 - iron-sulfur cluster assembly accessory protein 1453 71.24 +1 1484756..1485499 + 247 119387010 - Pden_4305 - Triose-phosphate isomerase 1454 67.37 0 1485545..1486678 + 377 119387011 - Pden_4306 - ABC transporter related 1455 68.89 0 1486668..1487342 + 224 119387012 - Pden_4307 - binding-protein-dependent transport systems inner membrane component 1456 63.52 0 1487359..1488153 + 264 119387013 - Pden_4308 - YaeC family lipoprotein 1457 66.47 0 1488263..1489765 - 500 119387014 - Pden_4309 - Acetyl-CoA hydrolase 1458 69.82 0 1489904..1490347 - 147 119387015 - Pden_4310 - DoxX family protein 1459 69.08 0 1490452..1491363 + 303 119387016 - Pden_4311 - LysR family transcriptional regulator 1460 72.81 +1 1491326..1492726 - 466 119387017 - Pden_4312 - FAD linked oxidase domain-containing protein 1461 68.73 0 1492726..1493307 - 193 119387018 - Pden_4313 - GCN5-related N-acetyltransferase 1462 68.64 0 1493307..1494572 - 421 119387019 - Pden_4314 - peptidase M16 domain-containing protein 1463 66.09 0 1494569..1495957 - 462 119387020 - Pden_4315 - threonine synthase 1464 67.26 0 1495967..1496638 - 223 119387021 - Pden_4316 - SURF1 protein 1465 61.21 -1 1496704..1497528 - 274 119387022 - Pden_4317 - cytochrome c oxidase, subunit III 1466 63.78 0 1497563..1498150 - 195 119387023 - Pden_4318 - cytochrome C oxidase assembly protein 1467 70.29 0 1498147..1498422 - 91 119387024 - Pden_4319 - hypothetical protein 1468 66.12 0 1498416..1499333 - 305 119387025 - Pden_4320 - protoheme IX farnesyltransferase 1469 64.44 0 1499343..1500239 - 298 119387026 - Pden_4321 - cytochrome-c oxidase 1470 70.76 0 1500382..1501821 + 479 119387027 - Pden_4322 - peptidase U62, modulator of DNA gyrase 1471 71.60 +1 1501919..1503175 + 418 119387028 - Pden_4323 - DNA protecting protein DprA 1472 71.16 +1 1503467..1505602 + 711 119387029 - Pden_4324 - OmpA/MotB domain-containing protein 1473 67.83 0 1505694..1506383 - 229 119387030 - Pden_4325 - two component transcriptional regulator 1474 65.96 0 1506387..1507097 - 236 119387031 - Pden_4326 - phosphate uptake regulator, PhoU 1475 63.66 0 1507115..1507912 - 265 119387032 - Pden_4327 - phosphate ABC transporter, ATPase subunit 1476 67.49 0 1507933..1509276 - 447 119387033 - Pden_4328 - phosphate ABC transporter, inner membrane subunit PstA 1477 67.09 0 1509273..1510463 - 396 119387034 - Pden_4329 - phosphate ABC transporter, inner membrane subunit PstC 1478 65.31 0 1510524..1511552 - 342 119387035 - Pden_4330 - phosphate ABC transporter, periplasmic phosphate-binding protein 1479 57.20 -2 1511549..1511791 - 80 119387036 - Pden_4331 - hypothetical protein 1480 69.85 0 1511803..1512903 - 366 119387037 - Pden_4332 - chorismate synthase 1481 66.97 0 1513319..1513648 - 109 119387038 - Pden_4333 - hypothetical protein 1482 66.46 0 1513676..1515139 + 487 119387039 - Pden_4334 - amino acid permease-associated region 1483 68.24 0 1515167..1516498 - 443 119387040 - Pden_4335 - HlyD family type I secretion membrane fusion protein 1484 68.72 0 1516482..1518473 - 663 119387041 - Pden_4336 - type I secretion system ATPase 1485 67.21 0 1518470..1520503 - 677 119387042 - Pden_4337 - hypothetical protein 1486 68.76 0 1520613..1522424 - 603 119387043 - Pden_4338 - PE-PGRS family protein 1487 61.97 -1 1523038..1523739 + 233 119387044 - Pden_4339 - response regulator receiver protein 1488 66.67 0 1523736..1524257 + 173 119387045 - Pden_4340 - hypothetical protein 1489 68.19 0 1524344..1525063 - 239 119387046 - Pden_4341 - sulfate ABC transporter, ATPase subunit 1490 69.35 0 1525080..1525973 - 297 119387047 - Pden_4342 - sulfate ABC transporter, inner membrane subunit CysW 1491 65.95 0 1525966..1526805 - 279 119387048 - Pden_4343 - sulfate ABC transporter, inner membrane subunit CysT 1492 65.86 0 1526809..1527795 - 328 119387049 - Pden_4344 - sulfate ABC transporter, periplasmic sulfate-binding protein 1493 70.98 +1 1528285..1529583 + 432 119387050 - Pden_4345 - secretion protein HlyD family protein 1494 70.38 0 1529573..1531753 + 726 119387051 - Pden_4346 - ABC transporter related 1495 67.95 0 1532148..1533389 + 413 119387052 - Pden_4347 - radical SAM domain-containing protein 1496 69.93 0 1533474..1535159 + 561 119387053 - Pden_4348 - integral membrane sensor hybrid histidine kinase 1497 71.66 +1 1535156..1535776 - 206 119387054 - Pden_4349 - two component LuxR family transcriptional regulator 1498 65.92 0 1535955..1537556 - 533 119387055 mdoD Pden_4350 - glucan biosynthesis protein D 1499 65.44 0 1537755..1539227 - 490 119387056 - Pden_4351 - permease for cytosine/purines, uracil, thiamine, allantoin 1500 66.50 0 1539330..1541114 - 594 119387057 - Pden_4352 - 5-oxoprolinase (ATP-hydrolyzing) 1501 67.92 0 1541127..1543205 - 692 119387058 - Pden_4353 - 5-oxoprolinase (ATP-hydrolyzing) 1502 64.11 0 1543296..1544039 - 247 119387059 - Pden_4354 - N-carbamoylsarcosine amidase 1503 65.23 0 1544204..1545109 + 301 119387060 - Pden_4355 - LysR family transcriptional regulator 1504 68.31 0 1545213..1545761 - 182 119387061 - Pden_4356 - cytochrome B561 1505 73.58 +1 1545866..1546603 + 245 119387062 - Pden_4357 - CDP-alcohol phosphatidyltransferase 1506 72.31 +1 1546600..1548177 + 525 119387063 - Pden_4358 - sulfatase 1507 70.18 0 1548197..1549192 + 331 119387064 - Pden_4359 - twin-arginine translocation pathway signal 1508 75.58 +2 1549185..1549958 + 257 119387065 - Pden_4360 - ABC transporter related 1509 73.40 +1 1549955..1551499 + 514 119387066 - Pden_4361 - binding-protein-dependent transport systems inner membrane component 1510 70.86 0 1551496..1552545 + 349 119387067 - Pden_4362 - glycosyl transferase, group 1 1511 66.18 0 1552589..1553200 - 203 119387068 - Pden_4363 - deaminase-reductase domain-containing protein 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0