IslandPathversion 1.0

IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No tRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.77 STD DEV: 4.14
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097
1662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1345	 72.94	+1	1354328..1355443	-	371	119386902	-	Pden_4197	-	UBA/THIF-type NAD/FAD binding protein
1346	 66.88	0	1355415..1357277	-	620	119386903	-	Pden_4198	-	radical SAM domain-containing protein
1347	 66.16	0	1357309..1357701	-	130	119386904	-	Pden_4199	-	hypothetical protein
1348	 68.25	0	1358307..1360007	+	566	119386905	-	Pden_4200	-	ABC transporter related
1349	 65.45	0	1360113..1362173	-	686	119386906	-	Pden_4201	-	TonB-dependent heme/hemoglobin receptor family protein
1350	 70.51	0	1362333..1363373	+	346	119386907	-	Pden_4202	-	hemin-degrading family protein
1351	 72.26	+1	1363370..1364245	+	291	119386908	-	Pden_4203	-	periplasmic binding protein
1352	 72.52	+1	1364245..1365321	+	358	119386909	-	Pden_4204	-	transport system permease protein
1353	 72.35	+1	1365318..1366091	+	257	119386910	-	Pden_4205	-	hemin importer ATP-binding subunit
1354	 72.05	+1	1366192..1367175	+	327	119386911	-	Pden_4206	-	alcohol dehydrogenase
1355	 69.38	0	1367233..1369002	+	589	119386912	-	Pden_4207	-	poly-beta-hydroxybutyrate polymerase domain-containing protein
1356	 70.02	0	1368999..1370102	-	367	119386913	-	Pden_4208	-	acetate kinase
1357	 70.12	0	1370099..1371025	-	308	119386914	-	Pden_4209	-	phosphate butyryltransferase
1358	 69.89	0	1371199..1371570	-	123	119386915	-	Pden_4210	-	response regulator receiver protein
1359	 66.32	0	1371664..1373379	-	571	119386916	actP	Pden_4211	-	acetate permease
1360	 59.87	-1	1373376..1373684	-	102	119386917	-	Pden_4212	-	hypothetical protein
1361	 66.72	0	1373891..1375846	-	651	119386918	-	Pden_4213	-	acetate--CoA ligase
1362	 74.86	+1	1376134..1377048	-	304	119386919	-	Pden_4214	-	ApbE family lipoprotein
1363	 68.23	0	1377045..1377620	-	191	119386920	-	Pden_4215	-	NosL family protein
1364	 72.85	+1	1377617..1378441	-	274	119386921	-	Pden_4216	-	nitrous oxide maturation protein NosY
1365	 71.56	+1	1378438..1379337	-	299	119386922	-	Pden_4217	-	ABC transporter related
1366	 66.07	0	1379303..1380634	-	443	119386923	-	Pden_4218	-	periplasmic copper-binding
1367	 64.42	0	1380640..1382598	-	652	119386924	-	Pden_4219	-	nitrous-oxide reductase
1368	 66.90	0	1382616..1384796	-	726	119386925	-	Pden_4220	-	FMN-binding domain-containing protein
1369	 73.24	+1	1384793..1385203	-	136	119386926	-	Pden_4221	-	hypothetical protein
1370	 62.84	0	1385540..1385983	+	147	119386927	-	Pden_4222	-	pseudoazurin
1371	 67.77	0	1386142..1386414	+	90	119386928	-	Pden_4223	-	hypothetical protein
1372	 67.40	0	1386481..1387161	-	226	119386929	-	Pden_4224	-	hypothetical protein
1373	 72.22	+1	1387139..1387732	-	197	119386930	-	Pden_4225	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1374	 71.56	+1	1387729..1389198	-	489	119386931	-	Pden_4226	-	UbiD family decarboxylase
1375	 71.54	+1	1389319..1389852	+	177	119386932	-	Pden_4227	-	hypothetical protein
1376	 69.08	0	1389849..1390844	+	331	119386933	-	Pden_4228	-	peptidase U32
1377	 71.49	+1	1390847..1391737	+	296	119386934	-	Pden_4229	-	peptidase U32
1378	 71.77	+1	1391761..1392975	+	404	119386935	-	Pden_4230	-	NnrS family protein
1379	 72.51	+1	1393035..1393547	-	170	119386936	-	Pden_4231	-	hypothetical protein
1380	 73.63	+1	1393547..1394350	-	267	119386937	-	Pden_4232	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1381	 63.53	0	1394356..1395057	-	233	119386938	-	Pden_4233	-	respiratory nitrate reductase, gamma subunit
1382	 68.84	0	1395072..1395761	-	229	119386939	-	Pden_4234	-	nitrate reductase molybdenum cofactor assembly chaperone
1383	 63.18	0	1395758..1397275	-	505	119386940	-	Pden_4235	-	nitrate reductase, beta subunit
1384	 65.26	0	1397272..1401036	-	1254	119386941	-	Pden_4236	-	nitrate reductase, alpha subunit
1385	 66.41	0	1401051..1403768	-	905	119386942	-	Pden_4237	-	nitrite transporter
1386	 66.10	0	1404042..1404746	+	234	119386943	ftrB	Pden_4238	-	transcriptional activator FtrB
1387	 73.45	+1	1404840..1405901	+	353	119386944	-	Pden_4239	-	methylated-DNA--protein-cysteine methyltransferase
1388	 74.85	+1	1405972..1406949	+	325	119386945	-	Pden_4240	-	FAD-binding 9, siderophore-interacting domain-containing protein
1389	 69.61	0	1406954..1408144	-	396	119386946	-	Pden_4241	-	Bcr/CflA subfamily drug resistance transporter
1390	 61.75	-1	1408491..1408673	+	60	119386947	-	Pden_4242	-	hypothetical protein
1391	 68.37	0	1408704..1409231	+	175	119386948	-	Pden_4243	-	GntR domain-containing protein
1392	 72.46	+1	1409413..1410396	+	327	119386949	-	Pden_4244	-	asparaginase/glutaminase
1393	 68.86	0	1410436..1411347	-	303	119386950	-	Pden_4245	-	galactose 1-dehydrogenase
1394	 68.44	0	1411347..1413095	-	582	119386951	-	Pden_4246	-	dihydroxy-acid dehydratase
1395	 71.14	+1	1413095..1414078	-	327	119386952	-	Pden_4247	-	hypothetical protein
1396	 68.45	0	1414230..1415183	+	317	119386953	-	Pden_4248	-	LysR family transcriptional regulator
1397	 67.75	0	1415269..1416657	-	462	119386954	-	Pden_4249	-	sodium:dicarboxylate symporter
1398	 71.15	+1	1416909..1417622	+	237	119386955	-	Pden_4250	-	ankyrin
1399	 69.62	0	1417634..1418107	+	157	119386956	-	Pden_4251	-	CMP/dCMP deaminase, zinc-binding
1400	 73.81	+1	1418104..1419321	+	405	119386957	-	Pden_4252	-	major facilitator transporter
1401	 72.54	+1	1419350..1419775	+	141	119386958	-	Pden_4253	-	hypothetical protein
1402	 72.36	+1	1419940..1420677	+	245	119386959	-	Pden_4254	-	hypothetical protein
1403	 71.83	+1	1420741..1421979	+	412	119386960	-	Pden_4255	-	molecular chaperone, DnaK
1404	 68.23	0	1422043..1422939	-	298	119386961	-	Pden_4256	-	LysR family transcriptional regulator
1405	 68.33	0	1423057..1424502	+	481	119386962	-	Pden_4257	-	molybdopterin dehydrogenase, FAD-binding
1406	 66.32	0	1424499..1426811	+	770	119386963	-	Pden_4258	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
1407	 70.70	0	1426808..1427551	+	247	119386964	-	Pden_4259	-	hypothetical protein
1408	 66.90	0	1427539..1428816	+	425	119386965	-	Pden_4260	-	guanine deaminase
1409	 58.68	-1	1429004..1429504	-	166	119386966	-	Pden_4261	-	acetone carboxylase gamma subunit
1410	 64.46	0	1429569..1431884	-	771	119386967	-	Pden_4262	-	hydantoinase B/oxoprolinase
1411	 64.55	0	1431909..1434080	-	723	119386968	-	Pden_4263	-	hydantoinase/oxoprolinase
1412	 69.76	0	1434201..1436009	-	602	119386969	-	Pden_4264	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1413	 65.50	0	1436146..1436916	-	256	119386970	-	Pden_4265	-	GntR domain-containing protein
1414	 68.96	0	1436925..1438409	-	494	119386971	-	Pden_4266	-	MlrC domain-containing protein
1415	 70.75	0	1438406..1439680	-	424	119386972	-	Pden_4267	-	amidase
1416	 67.38	0	1439677..1440381	-	234	119386973	-	Pden_4268	-	ABC transporter related
1417	 69.14	0	1440378..1441145	-	255	119386974	-	Pden_4269	-	ABC transporter related
1418	 66.05	0	1441147..1442124	-	325	119386975	-	Pden_4270	-	inner-membrane translocator
1419	 67.20	0	1442121..1443065	-	314	119386976	-	Pden_4271	-	inner-membrane translocator
1420	 65.84	0	1443040..1444251	-	403	119386977	-	Pden_4272	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
1421	 65.29	0	1444586..1445965	+	459	119386978	-	Pden_4273	-	aminotransferase class-III
1422	 70.53	0	1446028..1447527	+	499	119386979	-	Pden_4274	-	GntR family transcriptional regulator
1423	 73.15	+1	1447511..1448467	-	318	119386980	-	Pden_4275	-	phosphate acetyltransferase
1424	 72.27	+1	1448480..1449496	-	338	119386981	-	Pden_4276	-	hypothetical protein
1425	 68.13	0	1449770..1451551	-	593	119386982	-	Pden_4277	-	sulfoacetaldehyde acetyltransferase
1426	 69.35	0	1451564..1453204	-	546	119386983	-	Pden_4278	-	glucose-methanol-choline oxidoreductase
1427	 64.60	0	1453293..1454600	-	435	119386984	-	Pden_4279	-	major facilitator transporter
1428	 65.49	0	1454824..1455588	+	254	119386985	-	Pden_4280	-	regulatory proteins, IclR
1429	 70.35	0	1455734..1456684	-	316	119386986	-	Pden_4281	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1430	 69.28	0	1456681..1457673	-	330	119386987	-	Pden_4282	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1431	 67.58	0	1457677..1458555	-	292	119386988	-	Pden_4283	-	binding-protein-dependent transport systems inner membrane component
1432	 67.80	0	1458559..1459530	-	323	119386989	-	Pden_4284	-	binding-protein-dependent transport systems inner membrane component
1433	 66.16	0	1459549..1461141	-	530	119386990	-	Pden_4285	-	extracellular solute-binding protein
1434	 66.77	0	1461247..1462191	-	314	119386991	-	Pden_4286	-	LysR family transcriptional regulator
1435	 69.05	0	1462297..1463931	+	544	119386992	-	Pden_4287	-	amidohydrolase 3
1436	 69.85	0	1463935..1464846	+	303	119386993	-	Pden_4288	-	cobalamin synthesis protein, P47K
1437	 77.22	+2	1465112..1465765	+	217	119386994	-	Pden_4289	-	hypothetical protein
1438	 75.94	+2	1465671..1467191	+	506	119386995	-	Pden_4290	-	hypothetical protein
1439	 67.56	0	1467191..1470424	+	1077	119386996	-	Pden_4291	-	DNA polymerase III, alpha subunit
1440	 51.79	-2	1470491..1470658	-	55	119386997	rpmG	Pden_4292	-	50S ribosomal protein L33
1441	 71.31	+1	1471303..1471668	-	121	119386998	-	Pden_4293	-	HxlR family transcriptional regulator
1442	 71.17	+1	1471754..1472596	+	280	119386999	-	Pden_4294	-	NmrA family protein
1443	 66.17	0	1472593..1474992	-	799	119387000	-	Pden_4295	-	UvrD/REP helicase
1444	 60.26	-1	1475039..1475350	-	103	119387001	-	Pden_4296	-	hypothetical protein
66.77	MEAN

4.14	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.