version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1345 72.94 +1 1354328..1355443 - 371 119386902 - Pden_4197 - UBA/THIF-type NAD/FAD binding protein 1346 66.88 0 1355415..1357277 - 620 119386903 - Pden_4198 - radical SAM domain-containing protein 1347 66.16 0 1357309..1357701 - 130 119386904 - Pden_4199 - hypothetical protein 1348 68.25 0 1358307..1360007 + 566 119386905 - Pden_4200 - ABC transporter related 1349 65.45 0 1360113..1362173 - 686 119386906 - Pden_4201 - TonB-dependent heme/hemoglobin receptor family protein 1350 70.51 0 1362333..1363373 + 346 119386907 - Pden_4202 - hemin-degrading family protein 1351 72.26 +1 1363370..1364245 + 291 119386908 - Pden_4203 - periplasmic binding protein 1352 72.52 +1 1364245..1365321 + 358 119386909 - Pden_4204 - transport system permease protein 1353 72.35 +1 1365318..1366091 + 257 119386910 - Pden_4205 - hemin importer ATP-binding subunit 1354 72.05 +1 1366192..1367175 + 327 119386911 - Pden_4206 - alcohol dehydrogenase 1355 69.38 0 1367233..1369002 + 589 119386912 - Pden_4207 - poly-beta-hydroxybutyrate polymerase domain-containing protein 1356 70.02 0 1368999..1370102 - 367 119386913 - Pden_4208 - acetate kinase 1357 70.12 0 1370099..1371025 - 308 119386914 - Pden_4209 - phosphate butyryltransferase 1358 69.89 0 1371199..1371570 - 123 119386915 - Pden_4210 - response regulator receiver protein 1359 66.32 0 1371664..1373379 - 571 119386916 actP Pden_4211 - acetate permease 1360 59.87 -1 1373376..1373684 - 102 119386917 - Pden_4212 - hypothetical protein 1361 66.72 0 1373891..1375846 - 651 119386918 - Pden_4213 - acetate--CoA ligase 1362 74.86 +1 1376134..1377048 - 304 119386919 - Pden_4214 - ApbE family lipoprotein 1363 68.23 0 1377045..1377620 - 191 119386920 - Pden_4215 - NosL family protein 1364 72.85 +1 1377617..1378441 - 274 119386921 - Pden_4216 - nitrous oxide maturation protein NosY 1365 71.56 +1 1378438..1379337 - 299 119386922 - Pden_4217 - ABC transporter related 1366 66.07 0 1379303..1380634 - 443 119386923 - Pden_4218 - periplasmic copper-binding 1367 64.42 0 1380640..1382598 - 652 119386924 - Pden_4219 - nitrous-oxide reductase 1368 66.90 0 1382616..1384796 - 726 119386925 - Pden_4220 - FMN-binding domain-containing protein 1369 73.24 +1 1384793..1385203 - 136 119386926 - Pden_4221 - hypothetical protein 1370 62.84 0 1385540..1385983 + 147 119386927 - Pden_4222 - pseudoazurin 1371 67.77 0 1386142..1386414 + 90 119386928 - Pden_4223 - hypothetical protein 1372 67.40 0 1386481..1387161 - 226 119386929 - Pden_4224 - hypothetical protein 1373 72.22 +1 1387139..1387732 - 197 119386930 - Pden_4225 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1374 71.56 +1 1387729..1389198 - 489 119386931 - Pden_4226 - UbiD family decarboxylase 1375 71.54 +1 1389319..1389852 + 177 119386932 - Pden_4227 - hypothetical protein 1376 69.08 0 1389849..1390844 + 331 119386933 - Pden_4228 - peptidase U32 1377 71.49 +1 1390847..1391737 + 296 119386934 - Pden_4229 - peptidase U32 1378 71.77 +1 1391761..1392975 + 404 119386935 - Pden_4230 - NnrS family protein 1379 72.51 +1 1393035..1393547 - 170 119386936 - Pden_4231 - hypothetical protein 1380 73.63 +1 1393547..1394350 - 267 119386937 - Pden_4232 - PpiC-type peptidyl-prolyl cis-trans isomerase 1381 63.53 0 1394356..1395057 - 233 119386938 - Pden_4233 - respiratory nitrate reductase, gamma subunit 1382 68.84 0 1395072..1395761 - 229 119386939 - Pden_4234 - nitrate reductase molybdenum cofactor assembly chaperone 1383 63.18 0 1395758..1397275 - 505 119386940 - Pden_4235 - nitrate reductase, beta subunit 1384 65.26 0 1397272..1401036 - 1254 119386941 - Pden_4236 - nitrate reductase, alpha subunit 1385 66.41 0 1401051..1403768 - 905 119386942 - Pden_4237 - nitrite transporter 1386 66.10 0 1404042..1404746 + 234 119386943 ftrB Pden_4238 - transcriptional activator FtrB 1387 73.45 +1 1404840..1405901 + 353 119386944 - Pden_4239 - methylated-DNA--protein-cysteine methyltransferase 1388 74.85 +1 1405972..1406949 + 325 119386945 - Pden_4240 - FAD-binding 9, siderophore-interacting domain-containing protein 1389 69.61 0 1406954..1408144 - 396 119386946 - Pden_4241 - Bcr/CflA subfamily drug resistance transporter 1390 61.75 -1 1408491..1408673 + 60 119386947 - Pden_4242 - hypothetical protein 1391 68.37 0 1408704..1409231 + 175 119386948 - Pden_4243 - GntR domain-containing protein 1392 72.46 +1 1409413..1410396 + 327 119386949 - Pden_4244 - asparaginase/glutaminase 1393 68.86 0 1410436..1411347 - 303 119386950 - Pden_4245 - galactose 1-dehydrogenase 1394 68.44 0 1411347..1413095 - 582 119386951 - Pden_4246 - dihydroxy-acid dehydratase 1395 71.14 +1 1413095..1414078 - 327 119386952 - Pden_4247 - hypothetical protein 1396 68.45 0 1414230..1415183 + 317 119386953 - Pden_4248 - LysR family transcriptional regulator 1397 67.75 0 1415269..1416657 - 462 119386954 - Pden_4249 - sodium:dicarboxylate symporter 1398 71.15 +1 1416909..1417622 + 237 119386955 - Pden_4250 - ankyrin 1399 69.62 0 1417634..1418107 + 157 119386956 - Pden_4251 - CMP/dCMP deaminase, zinc-binding 1400 73.81 +1 1418104..1419321 + 405 119386957 - Pden_4252 - major facilitator transporter 1401 72.54 +1 1419350..1419775 + 141 119386958 - Pden_4253 - hypothetical protein 1402 72.36 +1 1419940..1420677 + 245 119386959 - Pden_4254 - hypothetical protein 1403 71.83 +1 1420741..1421979 + 412 119386960 - Pden_4255 - molecular chaperone, DnaK 1404 68.23 0 1422043..1422939 - 298 119386961 - Pden_4256 - LysR family transcriptional regulator 1405 68.33 0 1423057..1424502 + 481 119386962 - Pden_4257 - molybdopterin dehydrogenase, FAD-binding 1406 66.32 0 1424499..1426811 + 770 119386963 - Pden_4258 - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 1407 70.70 0 1426808..1427551 + 247 119386964 - Pden_4259 - hypothetical protein 1408 66.90 0 1427539..1428816 + 425 119386965 - Pden_4260 - guanine deaminase 1409 58.68 -1 1429004..1429504 - 166 119386966 - Pden_4261 - acetone carboxylase gamma subunit 1410 64.46 0 1429569..1431884 - 771 119386967 - Pden_4262 - hydantoinase B/oxoprolinase 1411 64.55 0 1431909..1434080 - 723 119386968 - Pden_4263 - hydantoinase/oxoprolinase 1412 69.76 0 1434201..1436009 - 602 119386969 - Pden_4264 - Fis family GAF modulated sigma54 specific transcriptional regulator 1413 65.50 0 1436146..1436916 - 256 119386970 - Pden_4265 - GntR domain-containing protein 1414 68.96 0 1436925..1438409 - 494 119386971 - Pden_4266 - MlrC domain-containing protein 1415 70.75 0 1438406..1439680 - 424 119386972 - Pden_4267 - amidase 1416 67.38 0 1439677..1440381 - 234 119386973 - Pden_4268 - ABC transporter related 1417 69.14 0 1440378..1441145 - 255 119386974 - Pden_4269 - ABC transporter related 1418 66.05 0 1441147..1442124 - 325 119386975 - Pden_4270 - inner-membrane translocator 1419 67.20 0 1442121..1443065 - 314 119386976 - Pden_4271 - inner-membrane translocator 1420 65.84 0 1443040..1444251 - 403 119386977 - Pden_4272 - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 1421 65.29 0 1444586..1445965 + 459 119386978 - Pden_4273 - aminotransferase class-III 1422 70.53 0 1446028..1447527 + 499 119386979 - Pden_4274 - GntR family transcriptional regulator 1423 73.15 +1 1447511..1448467 - 318 119386980 - Pden_4275 - phosphate acetyltransferase 1424 72.27 +1 1448480..1449496 - 338 119386981 - Pden_4276 - hypothetical protein 1425 68.13 0 1449770..1451551 - 593 119386982 - Pden_4277 - sulfoacetaldehyde acetyltransferase 1426 69.35 0 1451564..1453204 - 546 119386983 - Pden_4278 - glucose-methanol-choline oxidoreductase 1427 64.60 0 1453293..1454600 - 435 119386984 - Pden_4279 - major facilitator transporter 1428 65.49 0 1454824..1455588 + 254 119386985 - Pden_4280 - regulatory proteins, IclR 1429 70.35 0 1455734..1456684 - 316 119386986 - Pden_4281 - oligopeptide/dipeptide ABC transporter, ATPase subunit 1430 69.28 0 1456681..1457673 - 330 119386987 - Pden_4282 - oligopeptide/dipeptide ABC transporter, ATPase subunit 1431 67.58 0 1457677..1458555 - 292 119386988 - Pden_4283 - binding-protein-dependent transport systems inner membrane component 1432 67.80 0 1458559..1459530 - 323 119386989 - Pden_4284 - binding-protein-dependent transport systems inner membrane component 1433 66.16 0 1459549..1461141 - 530 119386990 - Pden_4285 - extracellular solute-binding protein 1434 66.77 0 1461247..1462191 - 314 119386991 - Pden_4286 - LysR family transcriptional regulator 1435 69.05 0 1462297..1463931 + 544 119386992 - Pden_4287 - amidohydrolase 3 1436 69.85 0 1463935..1464846 + 303 119386993 - Pden_4288 - cobalamin synthesis protein, P47K 1437 77.22 +2 1465112..1465765 + 217 119386994 - Pden_4289 - hypothetical protein 1438 75.94 +2 1465671..1467191 + 506 119386995 - Pden_4290 - hypothetical protein 1439 67.56 0 1467191..1470424 + 1077 119386996 - Pden_4291 - DNA polymerase III, alpha subunit 1440 51.79 -2 1470491..1470658 - 55 119386997 rpmG Pden_4292 - 50S ribosomal protein L33 1441 71.31 +1 1471303..1471668 - 121 119386998 - Pden_4293 - HxlR family transcriptional regulator 1442 71.17 +1 1471754..1472596 + 280 119386999 - Pden_4294 - NmrA family protein 1443 66.17 0 1472593..1474992 - 799 119387000 - Pden_4295 - UvrD/REP helicase 1444 60.26 -1 1475039..1475350 - 103 119387001 - Pden_4296 - hypothetical protein 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0