version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1272 56.41 -2 1277381..1277614 - 77 119386829 hfq Pden_4124 - RNA-binding protein Hfq 1273 69.93 0 1277695..1279317 - 540 119386830 - Pden_4125 - cation transporter 1274 66.45 0 1279326..1280702 - 458 119386831 trkA Pden_4126 - potassium transporter peripheral membrane component 1275 66.95 0 1281036..1282424 - 462 119386832 - Pden_4127 - two component, sigma54 specific, Fis family transcriptional regulator 1276 68.08 0 1282421..1284679 - 752 119386833 - Pden_4128 - multi-sensor signal transduction histidine kinase 1277 71.67 +1 1284765..1286222 - 485 119386834 - Pden_4129 - two component, sigma54 specific, Fis family transcriptional regulator 1278 71.16 +1 1286231..1287388 - 385 119386835 - Pden_4130 - signal transduction histidine kinase, nitrogen specific, NtrB 1279 74.29 +1 1287385..1288434 - 349 119386836 - Pden_4131 - nifR3 family TIM-barrel protein 1280 68.62 0 1288663..1290045 + 460 119386837 - Pden_4132 - L-serine dehydratase 1 1281 73.68 +1 1290172..1291083 + 303 119386838 - Pden_4133 - FHA domain-containing protein 1282 66.80 0 1291171..1293366 + 731 119386839 - Pden_4134 - protein of unknown function DUF940, membrane lipoprotein putative 1283 70.55 0 1293363..1294031 + 222 119386840 - Pden_4135 - hypothetical protein 1284 61.58 -1 1294204..1294596 - 130 119386841 - Pden_4136 - hypothetical protein 1285 67.18 0 1294622..1295404 - 260 119386842 - Pden_4137 - ABC-3 protein 1286 70.85 0 1295411..1296175 - 254 119386843 - Pden_4138 - ABC transporter related 1287 71.31 +1 1296172..1296666 - 164 119386844 - Pden_4139 - ferric uptake regulator family protein 1288 67.69 0 1296748..1297728 + 326 119386845 - Pden_4140 - periplasmic solute binding protein 1289 64.41 0 1297911..1298087 + 58 119386846 - Pden_4141 - hypothetical protein 1290 69.51 0 1298113..1299486 - 457 119386847 - Pden_4142 - RNA-binding S4 domain-containing protein 1291 70.22 0 1299595..1300044 + 149 119386848 - Pden_4143 - CMP/dCMP deaminase, zinc-binding 1292 67.77 0 1300140..1303574 + 1144 119386849 - Pden_4144 - pyruvate carboxylase 1293 68.95 0 1303951..1305000 - 349 119386850 - Pden_4145 - protein of unknown function DUF395, YeeE/YedE 1294 60.23 -1 1305071..1305412 - 113 119386851 - Pden_4146 - regulatory protein, ArsR 1295 66.67 0 1305520..1305903 - 127 119386852 - Pden_4147 - SoxS 1296 67.07 0 1305975..1306712 + 245 119386853 - Pden_4148 - cytochrome c biogenesis protein, transmembrane region 1297 63.64 0 1306726..1307286 + 186 119386854 - Pden_4149 - thioredoxin SoxW 1298 66.46 0 1307402..1307875 + 157 119386855 - Pden_4150 - cytochrome c, class I 1299 73.05 +1 1307915..1308337 + 140 119386856 - Pden_4151 - sulfur oxidation protein SoxY 1300 59.70 -1 1308359..1308688 + 109 119386857 - Pden_4152 - sulfur oxidation Z protein 1301 65.98 0 1308725..1309597 + 290 119386858 - Pden_4153 - diheme cytochrome c SoxA 1302 64.90 0 1309716..1311410 + 564 119386859 - Pden_4154 - 5'-nucleotidase domain-containing protein 1303 65.97 0 1311433..1312725 + 430 119386860 - Pden_4155 - oxidoreductase, molybdopterin binding 1304 68.23 0 1312709..1313857 + 382 119386861 - Pden_4156 - cytochrome c, class I 1305 68.21 0 1313861..1314571 + 236 119386862 - Pden_4157 - cytochrome c, class I 1306 67.06 0 1314627..1315889 + 420 119386863 - Pden_4158 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1307 70.83 0 1315907..1316818 + 303 119386864 - Pden_4159 - beta-lactamase domain-containing protein 1308 65.18 0 1316818..1317756 + 312 119386865 - Pden_4160 - SoxH protein-like 1309 68.51 0 1317760..1318842 - 360 119386866 - Pden_4161 - protein of unknown function DUF395, YeeE/YedE 1310 57.53 -2 1319216..1320298 + 360 119386867 - Pden_4162 - hypothetical protein 1311 61.55 -1 1320373..1321368 + 331 119386868 - Pden_4163 - hypothetical protein 1312 63.69 0 1321384..1321752 - 122 119386869 - Pden_4164 - HxlR family transcriptional regulator 1313 65.94 0 1321888..1322436 + 182 119386870 - Pden_4165 - (Acyl-carrier-protein) phosphodiesterase 1314 71.71 +1 1322456..1323625 - 389 119386871 - Pden_4166 - NnrS family protein 1315 69.87 0 1323622..1324371 - 249 119386872 - Pden_4167 - ABC transporter related 1316 71.67 +1 1324368..1325186 - 272 119386873 - Pden_4168 - binding-protein-dependent transport systems inner membrane component 1317 71.99 +1 1325183..1326178 - 331 119386874 - Pden_4169 - putative sulfonate/nitrate transport system substrate-binding protein 1318 70.92 0 1326284..1326589 - 101 119386875 - Pden_4170 - hypothetical protein 1319 70.05 0 1326586..1327206 - 206 119386876 - Pden_4171 - hypothetical protein 1320 69.95 0 1327210..1327758 - 182 119386877 - Pden_4172 - BadM/Rrf2 family transcriptional regulator 1321 70.77 0 1327758..1329977 - 739 119386878 - Pden_4173 - TonB-dependent receptor 1322 70.20 0 1330301..1331233 + 310 119386879 - Pden_4174 - DeoR family transcriptional regulator 1323 73.87 +1 1331237..1332679 - 480 119386880 - Pden_4175 - carbohydrate kinase, FGGY 1324 71.39 +1 1332694..1333350 - 218 119386881 - Pden_4176 - HAD family hydrolase 1325 68.17 0 1333354..1334817 - 487 119386882 - Pden_4177 - mannitol dehydrogenase domain-containing protein 1326 67.17 0 1334887..1335885 - 332 119386883 - Pden_4178 - ABC transporter related 1327 61.37 -1 1335897..1336727 - 276 119386884 - Pden_4179 - binding-protein-dependent transport systems inner membrane component 1328 61.38 -1 1336733..1337602 - 289 119386885 - Pden_4180 - binding-protein-dependent transport systems inner membrane component 1329 65.98 0 1337701..1339008 - 435 119386886 - Pden_4181 - extracellular solute-binding protein 1330 66.02 0 1339157..1339621 - 154 119386887 - Pden_4182 - 7-cyano-7-deazaguanine reductase 1331 70.76 0 1339637..1340344 - 235 119386888 - Pden_4183 - radical SAM domain-containing protein 1332 62.71 0 1340341..1340694 - 117 119386889 - Pden_4184 - putative 6-pyruvoyl tetrahydropterin synthase 1333 69.23 0 1340694..1341395 - 233 119386890 - Pden_4185 - exsB protein 1334 71.10 +1 1341593..1342585 + 330 119386891 - Pden_4186 - hypothetical protein 1335 67.70 0 1342595..1343656 - 353 119386892 - Pden_4187 - glycerol-3-phosphate transporter ATP-binding subunit 1336 63.08 0 1343657..1344520 - 287 119386893 - Pden_4188 - binding-protein-dependent transport systems inner membrane component 1337 61.79 -1 1344513..1345394 - 293 119386894 - Pden_4189 - binding-protein-dependent transport systems inner membrane component 1338 64.74 0 1345444..1346739 - 431 119386895 - Pden_4190 - extracellular solute-binding protein 1339 72.96 +1 1346993..1348057 + 354 119386896 - Pden_4191 - hypothetical protein 1340 72.53 +1 1348066..1349481 + 471 119386897 - Pden_4192 - hypothetical protein 1341 67.76 0 1349495..1350223 + 242 119386898 - Pden_4193 - hypothetical protein 1342 69.79 0 1350220..1352109 - 629 119386899 - Pden_4194 - SARP family transcriptional regulator 1343 71.28 +1 1352237..1353016 - 259 119386900 - Pden_4195 - nitroreductase 1344 72.46 +1 1353021..1354331 - 436 119386901 - Pden_4196 - hypothetical protein 1345 72.94 +1 1354328..1355443 - 371 119386902 - Pden_4197 - UBA/THIF-type NAD/FAD binding protein 1346 66.88 0 1355415..1357277 - 620 119386903 - Pden_4198 - radical SAM domain-containing protein 1347 66.16 0 1357309..1357701 - 130 119386904 - Pden_4199 - hypothetical protein 1348 68.25 0 1358307..1360007 + 566 119386905 - Pden_4200 - ABC transporter related 1349 65.45 0 1360113..1362173 - 686 119386906 - Pden_4201 - TonB-dependent heme/hemoglobin receptor family protein 1350 70.51 0 1362333..1363373 + 346 119386907 - Pden_4202 - hemin-degrading family protein 1351 72.26 +1 1363370..1364245 + 291 119386908 - Pden_4203 - periplasmic binding protein 1352 72.52 +1 1364245..1365321 + 358 119386909 - Pden_4204 - transport system permease protein 1353 72.35 +1 1365318..1366091 + 257 119386910 - Pden_4205 - hemin importer ATP-binding subunit 1354 72.05 +1 1366192..1367175 + 327 119386911 - Pden_4206 - alcohol dehydrogenase 1355 69.38 0 1367233..1369002 + 589 119386912 - Pden_4207 - poly-beta-hydroxybutyrate polymerase domain-containing protein 1356 70.02 0 1368999..1370102 - 367 119386913 - Pden_4208 - acetate kinase 1357 70.12 0 1370099..1371025 - 308 119386914 - Pden_4209 - phosphate butyryltransferase 1358 69.89 0 1371199..1371570 - 123 119386915 - Pden_4210 - response regulator receiver protein 1359 66.32 0 1371664..1373379 - 571 119386916 actP Pden_4211 - acetate permease 1360 59.87 -1 1373376..1373684 - 102 119386917 - Pden_4212 - hypothetical protein 1361 66.72 0 1373891..1375846 - 651 119386918 - Pden_4213 - acetate--CoA ligase 1362 74.86 +1 1376134..1377048 - 304 119386919 - Pden_4214 - ApbE family lipoprotein 1363 68.23 0 1377045..1377620 - 191 119386920 - Pden_4215 - NosL family protein 1364 72.85 +1 1377617..1378441 - 274 119386921 - Pden_4216 - nitrous oxide maturation protein NosY 1365 71.56 +1 1378438..1379337 - 299 119386922 - Pden_4217 - ABC transporter related 1366 66.07 0 1379303..1380634 - 443 119386923 - Pden_4218 - periplasmic copper-binding 1367 64.42 0 1380640..1382598 - 652 119386924 - Pden_4219 - nitrous-oxide reductase 1368 66.90 0 1382616..1384796 - 726 119386925 - Pden_4220 - FMN-binding domain-containing protein 1369 73.24 +1 1384793..1385203 - 136 119386926 - Pden_4221 - hypothetical protein 1370 62.84 0 1385540..1385983 + 147 119386927 - Pden_4222 - pseudoazurin 1371 67.77 0 1386142..1386414 + 90 119386928 - Pden_4223 - hypothetical protein 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0