version 1.0
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097 1662 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1198 67.24 0 1198698..1200272 - 524 119386755 pntA Pden_4048 - NAD(P) transhydrogenase subunit alpha 1199 67.40 0 1200368..1201048 - 226 119386756 - Pden_4049 - hypothetical protein 1200 70.83 0 1201059..1201466 - 135 119386757 - Pden_4050 - isoprenylcysteine carboxyl methyltransferase 1201 67.60 0 1201502..1203649 - 715 119386758 - Pden_4051 - malate synthase G 1202 72.20 +1 1203819..1204523 - 234 119386759 - Pden_4052 - mucin-associated surface protein 1203 68.67 0 1204691..1207234 + 847 119386760 - Pden_4053 - aminopeptidase N 1204 69.00 0 1207252..1208193 + 313 119386761 - Pden_4054 - phospholipid/glycerol acyltransferase 1205 71.88 +1 1208346..1209458 - 370 119386762 - Pden_4055 - gamma-glutamyl kinase 1206 68.90 0 1209446..1210477 - 343 119386763 obgE Pden_4056 - GTPase ObgE 1207 61.36 -1 1210622..1210960 + 112 119386764 - Pden_4057 - small multidrug resistance protein 1208 70.27 0 1211023..1212438 + 471 119386765 - Pden_4058 - hypothetical protein 1209 70.88 0 1212457..1213239 + 260 119386766 - Pden_4059 - endonuclease/exonuclease/phosphatase 1210 67.29 0 1213306..1214583 + 425 119386767 - Pden_4060 - phosphopyruvate hydratase 1211 72.79 +1 1214632..1215447 - 271 119386768 - Pden_4061 - hypothetical protein 1212 69.13 0 1215444..1217066 - 540 119386769 - Pden_4062 - alpha-isopropylmalate/homocitrate synthase family transferase 1213 67.31 0 1217099..1218487 - 462 119386770 - Pden_4063 - cysteinyl-tRNA synthetase 1214 67.25 0 1218643..1218984 + 113 119386771 - Pden_4064 - hypothetical protein 1215 69.16 0 1219068..1219508 - 146 119386772 - Pden_4065 - hypothetical protein 1216 68.33 0 1219607..1220746 - 379 119386773 - Pden_4066 - ABC transporter related 1217 61.71 -1 1220743..1221549 - 268 119386774 - Pden_4067 - binding-protein-dependent transport systems inner membrane component 1218 63.22 0 1221546..1222415 - 289 119386775 - Pden_4068 - binding-protein-dependent transport systems inner membrane component 1219 69.95 0 1222509..1222934 - 141 119386776 - Pden_4069 - hypothetical protein 1220 67.52 0 1222931..1224445 - 504 119386777 - Pden_4070 - hypothetical protein 1221 61.93 -1 1224537..1225085 + 182 119386778 - Pden_4071 - NADPH-dependent FMN reductase 1222 64.46 0 1225149..1227143 - 664 119386779 - Pden_4072 - RNA polymerase sigma factor RpoD 1223 71.72 +1 1227285..1229225 - 646 119386780 dnaG Pden_4073 - DNA primase 1224 69.91 0 1229265..1229849 - 194 119386781 - Pden_4074 - TetR family transcriptional regulator 1225 66.58 0 1230311..1231474 + 387 119386782 - Pden_4075 - L-lactate dehydrogenase (cytochrome) 1226 64.04 0 1231504..1232571 - 355 119386783 - Pden_4076 - acyltransferase family protein 1227 64.91 0 1232663..1233289 + 208 119386784 - Pden_4077 - 50S ribosomal protein L25/general stress protein Ctc 1228 67.93 0 1233405..1234745 + 446 119386785 - Pden_4078 - tRNA (uracil-5-)-methyltransferase Gid 1229 66.90 0 1234742..1235587 + 281 119386786 - Pden_4079 - glutamyl-tRNA synthetase, class Ic 1230 62.30 -1 1235569..1235934 - 121 119386787 - Pden_4080 - phosphoribosyl-AMP cyclohydrolase 1231 69.18 0 1235995..1236432 + 145 119386788 - Pden_4081 - NifU-related protein involved in Fe-S cluster formation 1232 70.82 0 1236788..1238881 - 697 119386789 - Pden_4082 - DEAD/DEAH box helicase domain-containing protein 1233 69.23 0 1238878..1241175 - 765 119386790 - Pden_4083 - DNA ligase, NAD-dependent 1234 62.07 -1 1241333..1241506 - 57 119386791 - Pden_4084 - response regulator receiver protein 1235 58.81 -1 1241524..1241892 - 122 119386792 - Pden_4085 - hypothetical protein 1236 64.41 0 1241928..1242326 + 132 119386793 - Pden_4086 - hypothetical protein 1237 64.92 0 1242832..1243461 - 209 119386794 - Pden_4087 - hypothetical protein 1238 61.85 -1 1243464..1243733 - 89 119386795 - Pden_4088 - hypothetical protein 1239 63.41 0 1243733..1245883 - 716 119386796 - Pden_4089 - metallophosphoesterase 1240 64.67 0 1245880..1246230 - 116 119386797 - Pden_4090 - hypothetical protein 1241 65.51 0 1246230..1247267 - 345 119386798 - Pden_4091 - hypothetical protein 1242 60.28 -1 1247347..1247706 + 119 119386799 - Pden_4092 - hypothetical protein 1243 64.39 0 1247883..1249376 - 497 119386800 - Pden_4093 - hypothetical protein 1244 65.40 0 1249366..1250628 - 420 119386801 - Pden_4094 - hypothetical protein 1245 62.70 0 1250937..1251944 + 335 119386802 - Pden_4095 - phage integrase family protein 1246 59.28 -1 1251970..1252524 - 184 119386803 - Pden_4096 - two component transcriptional regulator 1247 60.90 -1 1252581..1252892 - 103 119386804 - Pden_4097 - hypothetical protein 1248 68.38 0 1253056..1254225 + 389 119386805 - Pden_4098 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1249 66.42 0 1254239..1254646 - 135 119386806 - Pden_4099 - Fe-S metabolism associated SufE 1250 69.80 0 1254775..1255284 + 169 119386807 - Pden_4100 - hypothetical protein 1251 65.38 0 1255587..1256132 - 181 119386808 - Pden_4101 - GCN5-related N-acetyltransferase 1252 64.10 0 1256245..1256517 - 90 119386809 rpmA Pden_4102 - 50S ribosomal protein L27 1253 65.01 0 1256537..1256959 - 140 119386810 - Pden_4103 - ribosomal protein L21 1254 71.19 +1 1257151..1258212 - 353 119386811 - Pden_4104 - L-carnitine dehydratase/bile acid-inducible protein F 1255 57.14 -2 1258639..1258827 - 62 119386812 - Pden_4105 - hypothetical protein 1256 67.26 0 1258997..1260334 - 445 119386813 - Pden_4106 - nitrilotriacetate monooxygenase 1257 68.86 0 1260347..1261075 - 242 119386814 - Pden_4107 - ABC transporter related 1258 67.37 0 1261072..1261923 - 283 119386815 - Pden_4108 - binding-protein-dependent transport systems inner membrane component 1259 64.45 0 1261944..1263161 - 405 119386816 - Pden_4109 - putative sulfonate/nitrate transport system substrate-binding protein 1260 70.29 0 1263193..1263993 - 266 119386817 - Pden_4110 - HpcH/HpaI aldolase 1261 67.87 0 1263987..1264820 - 277 119386818 - Pden_4111 - hypothetical protein 1262 68.65 0 1264817..1265923 - 368 119386819 - Pden_4112 - L-carnitine dehydratase/bile acid-inducible protein F 1263 62.76 0 1267193..1267576 - 127 119386820 - Pden_4115 - glyoxalase/bleomycin resistance protein/dioxygenase 1264 67.66 0 1267591..1269003 - 470 119386821 - Pden_4116 - hypothetical protein 1265 68.39 0 1269315..1270067 + 250 119386822 - Pden_4117 - methyltransferase type 11 1266 67.59 0 1270064..1271038 + 324 119386823 - Pden_4118 - LysR family transcriptional regulator 1267 69.39 0 1271048..1272553 + 501 119386824 - Pden_4119 - tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit 1268 64.40 0 1272599..1273921 - 440 119386825 - Pden_4120 - TRAP dicarboxylate transporter, DctM subunit 1269 60.66 -1 1273918..1274550 - 210 119386826 - Pden_4121 - tripartite ATP-independent periplasmic transporter DctQ 1270 61.41 -1 1274606..1275613 - 335 119386827 - Pden_4122 - TRAP dicarboxylate transporter, DctP subunit 1271 69.27 0 1276073..1277380 - 435 119386828 - Pden_4123 - small GTP-binding protein 1272 56.41 -2 1277381..1277614 - 77 119386829 hfq Pden_4124 - RNA-binding protein Hfq 1273 69.93 0 1277695..1279317 - 540 119386830 - Pden_4125 - cation transporter 1274 66.45 0 1279326..1280702 - 458 119386831 trkA Pden_4126 - potassium transporter peripheral membrane component 1275 66.95 0 1281036..1282424 - 462 119386832 - Pden_4127 - two component, sigma54 specific, Fis family transcriptional regulator 1276 68.08 0 1282421..1284679 - 752 119386833 - Pden_4128 - multi-sensor signal transduction histidine kinase 1277 71.67 +1 1284765..1286222 - 485 119386834 - Pden_4129 - two component, sigma54 specific, Fis family transcriptional regulator 1278 71.16 +1 1286231..1287388 - 385 119386835 - Pden_4130 - signal transduction histidine kinase, nitrogen specific, NtrB 1279 74.29 +1 1287385..1288434 - 349 119386836 - Pden_4131 - nifR3 family TIM-barrel protein 1280 68.62 0 1288663..1290045 + 460 119386837 - Pden_4132 - L-serine dehydratase 1 1281 73.68 +1 1290172..1291083 + 303 119386838 - Pden_4133 - FHA domain-containing protein 1282 66.80 0 1291171..1293366 + 731 119386839 - Pden_4134 - protein of unknown function DUF940, membrane lipoprotein putative 1283 70.55 0 1293363..1294031 + 222 119386840 - Pden_4135 - hypothetical protein 1284 61.58 -1 1294204..1294596 - 130 119386841 - Pden_4136 - hypothetical protein 1285 67.18 0 1294622..1295404 - 260 119386842 - Pden_4137 - ABC-3 protein 1286 70.85 0 1295411..1296175 - 254 119386843 - Pden_4138 - ABC transporter related 1287 71.31 +1 1296172..1296666 - 164 119386844 - Pden_4139 - ferric uptake regulator family protein 1288 67.69 0 1296748..1297728 + 326 119386845 - Pden_4140 - periplasmic solute binding protein 1289 64.41 0 1297911..1298087 + 58 119386846 - Pden_4141 - hypothetical protein 1290 69.51 0 1298113..1299486 - 457 119386847 - Pden_4142 - RNA-binding S4 domain-containing protein 1291 70.22 0 1299595..1300044 + 149 119386848 - Pden_4143 - CMP/dCMP deaminase, zinc-binding 1292 67.77 0 1300140..1303574 + 1144 119386849 - Pden_4144 - pyruvate carboxylase 1293 68.95 0 1303951..1305000 - 349 119386850 - Pden_4145 - protein of unknown function DUF395, YeeE/YedE 1294 60.23 -1 1305071..1305412 - 113 119386851 - Pden_4146 - regulatory protein, ArsR 1295 66.67 0 1305520..1305903 - 127 119386852 - Pden_4147 - SoxS 1296 67.07 0 1305975..1306712 + 245 119386853 - Pden_4148 - cytochrome c biogenesis protein, transmembrane region 1297 63.64 0 1306726..1307286 + 186 119386854 - Pden_4149 - thioredoxin SoxW 66.77 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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