IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.77   STD DEV: 4.14
Paracoccus denitrificans PD1222 chromosome 2, complete sequence - 1..1730097
1662 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
957	 68.67	0	943514..944161	+	215	119386514	-	Pden_3807	-	lytic transglycosylase, catalytic
958	 68.76	0	944224..944796	-	190	119386515	-	Pden_3808	-	hypothetical protein
959	 67.97	0	944867..945787	-	306	119386516	-	Pden_3809	-	delta-aminolevulinic acid dehydratase
960	 70.14	0	945864..946583	+	239	119386517	-	Pden_3810	-	hypothetical protein
961	 67.36	0	946626..950090	+	1154	119386518	-	Pden_3811	-	transcription-repair coupling factor
962	 65.07	0	950384..952702	-	772	119386519	-	Pden_3812	-	ATP-dependent Clp protease, ATP-binding subunit clpA
963	 68.94	0	952964..953710	-	248	119386520	-	Pden_3813	-	hydroxyacylglutathione hydrolase
964	 72.92	+1	953762..954544	+	260	119386521	-	Pden_3814	-	methyltransferase type 11
965	 66.04	0	954784..955419	+	211	119386522	-	Pden_3815	-	ATP synthase F1, delta subunit
966	 65.10	0	955419..956954	+	511	119386523	-	Pden_3816	-	F0F1 ATP synthase subunit alpha
967	 65.98	0	956967..957839	+	290	119386524	-	Pden_3817	-	F0F1 ATP synthase subunit gamma
968	 65.05	0	957857..959281	+	474	119386525	-	Pden_3818	-	F0F1 ATP synthase subunit beta
969	 67.34	0	959291..959737	+	148	119386526	-	Pden_3819	-	ATP synthase F1, epsilon subunit
970	 64.39	0	959832..960182	+	116	119386527	-	Pden_3820	-	hypothetical protein
971	 71.21	+1	960188..960958	-	256	119386528	-	Pden_3821	-	alpha/beta hydrolase fold
972	 68.67	0	960955..961554	-	199	119386529	-	Pden_3822	-	DSBA oxidoreductase
973	 64.80	0	961636..962655	+	339	119386530	-	Pden_3823	-	ribose-phosphate pyrophosphokinase
974	 67.33	0	962723..963175	-	150	119386531	-	Pden_3824	-	CoA-binding domain-containing protein
975	 65.46	0	963359..963772	-	137	119386532	-	Pden_3825	-	hypothetical protein
976	 69.80	0	963873..964670	-	265	119386533	-	Pden_3826	-	RNA methyltransferase
977	 58.14	-2	964815..965072	-	85	119386534	-	Pden_3827	-	hypothetical protein
978	 61.19	-1	965152..966009	+	285	119386535	-	Pden_3828	-	hypothetical protein
979	 66.59	0	966002..967363	+	453	119386536	-	Pden_3829	-	hypothetical protein
980	 66.26	0	967468..967713	+	81	119386537	-	Pden_3830	-	CopG/Arc/MetJ family transcriptional regulator
981	 61.46	-1	967710..967997	+	95	119386538	-	Pden_3831	-	plasmid stabilization system protein
982	 64.69	0	968083..968589	+	168	119386539	-	Pden_3832	-	hypothetical protein
983	 67.95	0	968814..969986	-	390	119386540	-	Pden_3833	-	hypothetical protein
984	 63.74	0	970254..970937	+	227	119386541	-	Pden_3834	-	hypothetical protein
985	 66.08	0	970940..971449	-	169	119386542	-	Pden_3835	-	hypothetical protein
986	 63.89	0	971625..971948	-	107	119386543	-	Pden_3836	-	hypothetical protein
987	 60.16	-1	972058..972303	+	81	119386544	-	Pden_3837	-	helix-turn-helix domain-containing protein
988	 53.21	-2	972636..973571	+	311	119386545	-	Pden_3838	-	DNA methylase N-4/N-6 domain-containing protein
989	 55.63	-2	973574..974044	+	156	119386546	-	Pden_3839	-	hypothetical protein
990	 56.68	-2	974059..975390	+	443	119386547	-	Pden_3840	-	hypothetical protein
991	 57.82	-2	975397..977307	+	636	119386548	-	Pden_3841	-	helicase domain-containing protein
992	 54.00	-2	977304..978140	+	278	119386549	-	Pden_3842	-	hypothetical protein
993	 61.04	-1	978209..978457	+	82	119386550	-	Pden_3843	-	hypothetical protein
994	 62.59	-1	978675..979703	-	342	119386551	-	Pden_3844	-	transposase IS116/IS110/IS902 family protein
995	 61.11	-1	979812..980135	+	107	119386552	-	Pden_3845	-	transposase IS3/IS911 family protein
996	 62.25	-1	980135..981040	+	301	119386553	-	Pden_3846	-	integrase catalytic subunit
997	 54.42	-2	981103..981894	-	263	119386554	-	Pden_3847	-	XRE family transcriptional regulator
998	 59.18	-1	981969..982262	+	97	119386555	-	Pden_3848	-	hypothetical protein
999	 61.82	-1	982462..983535	+	357	119386556	-	Pden_3849	-	phage integrase family protein
1000	 55.13	-2	983791..984180	+	129	119386557	-	Pden_3850	-	hypothetical protein
1001	 70.48	0	984185..986230	-	681	119386558	-	Pden_3851	-	hypothetical protein
1002	 69.64	0	986350..987189	-	279	119386559	-	Pden_3852	-	hypothetical protein
1003	 67.53	0	987193..987768	-	191	119386560	-	Pden_3853	-	hypothetical protein
1004	 60.92	-1	988104..988364	+	86	119386561	-	Pden_3854	-	hypothetical protein
1005	 63.68	0	988330..988797	-	155	119386562	-	Pden_3855	-	hypothetical protein
1006	 64.56	0	988892..989887	+	331	119386563	-	Pden_3856	-	substrate-binding region of ABC-type glycine betaine transport system
1007	 63.95	0	989964..990845	+	293	119386564	-	Pden_3857	-	binding-protein-dependent transport systems inner membrane component
1008	 64.76	0	990842..991888	+	348	119386565	-	Pden_3858	-	ABC transporter related
1009	 60.90	-1	991961..992359	+	132	119386566	-	Pden_3859	-	hypothetical protein
1010	 71.27	+1	992416..993522	+	368	119386567	-	Pden_3860	-	NUDIX hydrolase
1011	 67.05	0	993557..994588	+	343	119386568	-	Pden_3861	-	cysteine synthase A
1012	 68.99	0	994597..997089	+	830	119386569	-	Pden_3862	-	MscS mechanosensitive ion channel
1013	 66.93	0	997086..997472	+	128	119386570	-	Pden_3863	-	hypothetical protein
1014	 66.67	0	997469..998539	-	356	119386571	-	Pden_3864	-	hypothetical protein
1015	 66.89	0	998605..1001346	-	913	119386572	-	Pden_3865	-	DNA gyrase subunit A
1016	 69.09	0	1001441..1001935	-	164	119386573	-	Pden_3866	-	disulphide bond formation protein DsbB
1017	 63.65	0	1001988..1002584	-	198	119386574	-	Pden_3867	-	DedA family protein
1018	 67.84	0	1002716..1003567	+	283	119386575	-	Pden_3868	-	zinc metallopeptidase putative
1019	 67.72	0	1003738..1003926	-	62	119386576	-	Pden_3869	-	hypothetical protein
1020	 63.80	0	1003986..1004438	+	150	119386577	-	Pden_3870	-	cyclase/dehydrase
1021	 69.31	0	1004426..1005031	-	201	119386578	-	Pden_3871	-	hypothetical protein
1022	 65.57	0	1005125..1006486	-	453	119386579	-	Pden_3872	-	glutamate dehydrogenase
1023	 65.27	0	1006744..1008033	-	429	119386580	-	Pden_3873	-	crotonyl-CoA reductase
1024	 71.48	+1	1008225..1009139	-	304	119386581	-	Pden_3874	-	hypothetical protein
1025	 66.04	0	1009234..1011300	+	688	119386582	-	Pden_3875	-	methylmalonyl-CoA mutase, large subunit
1026	 69.98	0	1011399..1012304	-	301	119386583	-	Pden_3876	-	hypothetical protein
1027	 64.51	0	1012304..1012906	-	200	119386584	-	Pden_3877	-	uncharacterized peroxidase-related enzyme
1028	 66.47	0	1013103..1014599	+	498	119386585	-	Pden_3878	-	signal recognition particle protein
1029	 72.32	+1	1014604..1015134	+	176	119386586	-	Pden_3879	-	GCN5-related N-acetyltransferase
1030	 65.81	0	1015131..1015481	+	116	119386587	-	Pden_3880	-	chorismate mutase
1031	 66.13	0	1015531..1015905	+	124	119386588	rpsP	Pden_3881	-	30S ribosomal protein S16
1032	 66.67	0	1015905..1016408	+	167	119386589	-	Pden_3882	-	16S rRNA processing protein RimM
1033	 66.44	0	1016405..1017274	+	289	119386590	-	Pden_3883	-	tRNA (guanine-N1)-methyltransferase
1034	 65.35	0	1017271..1017651	+	126	119386591	rplS	Pden_3884	-	50S ribosomal protein L19
1035	 59.46	-1	1017663..1017884	+	73	119386592	-	Pden_3885	-	ribosomal protein L31
1036	 65.04	0	1018209..1018454	-	81	119386593	-	Pden_3886	-	hypothetical protein
1037	 66.28	0	1018726..1019508	+	260	119386594	-	Pden_3887	-	chromosome partitioning protein
1038	 72.99	+1	1019578..1020747	+	389	119386595	-	Pden_3888	-	Fis family transcriptional regulator
1039	 66.60	0	1020744..1023800	+	1018	119386596	-	Pden_3889	-	acriflavin resistance protein
1040	 67.20	0	1023906..1025210	-	434	119386597	-	Pden_3890	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1041	 66.01	0	1025223..1026593	-	456	119386598	-	Pden_3891	-	pyruvate dehydrogenase subunit beta
1042	 62.69	0	1026606..1027637	-	343	119386599	-	Pden_3892	-	pyruvate dehydrogenase (acetyl-transferring)
1043	 64.29	0	1027872..1028165	-	97	119386600	-	Pden_3893	-	septum formation initiator
1044	 66.97	0	1028190..1029491	-	433	119386601	-	Pden_3894	-	succinyl-diaminopimelate desuccinylase
1045	 61.35	-1	1029595..1029876	+	93	119386602	-	Pden_3895	-	hypothetical protein
1046	 66.36	0	1029887..1030546	+	219	119386603	-	Pden_3896	-	hypothetical protein
1047	 68.78	0	1030550..1031494	+	314	119386604	-	Pden_3897	-	deoxyribose-phosphate aldolase
1048	 69.93	0	1031497..1033827	+	776	119386605	-	Pden_3898	-	aldehyde dehydrogenase
1049	 66.40	0	1033911..1034666	-	251	119386606	-	Pden_3899	-	hydroxypyruvate isomerase
1050	 64.65	0	1034669..1035214	-	181	119386607	-	Pden_3900	-	hypothetical protein
1051	 71.16	+1	1035276..1036277	+	333	119386608	-	Pden_3901	-	ATPase
1052	 76.21	+2	1036274..1037143	+	289	119386609	-	Pden_3902	-	hypothetical protein
1053	 74.53	+1	1037143..1039062	+	639	119386610	-	Pden_3903	-	hypothetical protein
1054	 69.52	0	1039059..1039898	+	279	119386611	-	Pden_3904	-	hypothetical protein
1055	 72.04	+1	1039895..1041997	+	700	119386612	-	Pden_3905	-	hypothetical protein
1056	 63.55	0	1042009..1042554	+	181	119386613	-	Pden_3906	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
66.77	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.