IslandPathversion 1.0

IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.57 STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
891	 71.02	+1	880185..881033	-	282	119383648	ksgA	Pden_0897	-	dimethyladenosine transferase
892	 71.41	+1	881030..881998	-	322	119383649	pdxA	Pden_0898	-	4-hydroxythreonine-4-phosphate dehydrogenase
893	 68.95	0	882066..883337	-	423	119383650	-	Pden_0899	-	PpiC-type peptidyl-prolyl cis-trans isomerase
894	 69.28	0	883369..885783	-	804	119383651	-	Pden_0900	-	organic solvent tolerance protein
895	 69.61	0	885783..886904	-	373	119383652	-	Pden_0901	-	permease YjgP/YjgQ family protein
896	 68.23	0	886901..888049	-	382	119383653	-	Pden_0902	-	permease YjgP/YjgQ family protein
897	 72.60	+1	888179..889780	+	533	119383654	-	Pden_0903	-	leucyl aminopeptidase
898	 73.56	+1	889780..890229	+	149	119383655	-	Pden_0904	-	DNA polymerase III subunit chi
899	 70.49	0	890283..890858	-	191	119383656	-	Pden_0905	-	hypothetical protein
900	 68.30	0	890858..891469	-	203	119383657	-	Pden_0906	-	multiple antibiotic resistance (MarC)-related proteins
901	 66.67	0	891636..891914	+	92	119383658	-	Pden_0907	-	sec-independent translocation protein mttA/Hcf106
902	 70.44	0	891933..892436	+	167	119383659	-	Pden_0908	-	twin-arginine translocation protein, TatB subunit
903	 61.33	-1	892437..893279	+	280	119383660	-	Pden_0909	-	Sec-independent protein translocase, TatC subunit
904	 67.50	0	893272..894114	+	280	119383661	-	Pden_0910	-	hypothetical protein
905	 65.14	0	894663..895712	-	349	119383662	-	Pden_0911	-	choloylglycine hydrolase
906	 61.95	-1	895740..896078	-	112	119383663	-	Pden_0912	-	hypothetical protein
907	 66.45	0	896404..897765	-	453	119383664	-	Pden_0913	-	homogentisate 1,2-dioxygenase
908	 71.06	+1	897908..898339	+	143	119383665	-	Pden_0914	-	MarR family transcriptional regulator
909	 63.66	0	898445..898843	-	132	119383666	-	Pden_0915	-	entericidin EcnAB
910	 65.42	0	898903..899223	+	106	119383667	-	Pden_0916	-	TraR/DksA family transcriptional regulator
911	 62.67	0	899233..899382	-	49	119383668	-	Pden_0917	-	entericidin EcnAB
912	 67.45	0	899825..900592	-	255	119383669	-	Pden_0918	-	alpha/beta hydrolase fold
913	 70.05	0	900663..901046	+	127	119383670	-	Pden_0919	-	hypothetical protein
914	 65.89	0	901497..902780	-	427	119383671	-	Pden_0920	-	serine hydroxymethyltransferase
915	 68.13	0	902924..903673	+	249	119383672	ppnK	Pden_0921	-	inorganic polyphosphate/ATP-NAD kinase
916	 63.85	0	903740..905335	+	531	119383673	-	Pden_0922	-	peptide chain release factor 3
917	 62.08	-1	905484..905984	+	166	119383674	-	Pden_0923	-	hypothetical protein
918	 64.30	0	906075..906497	-	140	119383675	-	Pden_0924	-	OsmC family protein
919	 72.15	+1	906605..907498	+	297	119383676	-	Pden_0925	-	hypothetical protein
920	 63.56	0	907568..907921	+	117	119383677	-	Pden_0926	-	hypothetical protein
921	 67.63	0	907993..909129	-	378	119383678	-	Pden_0927	-	putative deoxyguanosinetriphosphate triphosphohydrolase
922	 67.56	0	909205..909540	+	111	119383679	-	Pden_0928	-	iron-sulfur cluster assembly accessory protein
923	 67.05	0	909579..910364	+	261	119383680	-	Pden_0929	-	exodeoxyribonuclease III Xth
924	 62.43	0	910464..910817	-	117	119383681	-	Pden_0930	-	hypothetical protein
925	 64.89	0	910948..912804	-	618	119383682	-	Pden_0931	-	extracellular solute-binding protein
926	 65.39	0	913215..913997	+	260	119383683	-	Pden_0932	-	3-hydroxybutyrate dehydrogenase
927	 65.25	0	914019..915005	-	328	119383684	-	Pden_0933	-	basic membrane lipoprotein
928	 65.38	0	915121..916053	-	310	119383685	thyX	Pden_0934	-	FAD-dependent thymidylate synthase
929	 62.94	0	916203..916631	+	142	119383686	-	Pden_0935	-	glyoxalase/bleomycin resistance protein/dioxygenase
930	 66.09	0	916811..917329	-	172	119383687	-	Pden_0936	-	MarR family transcriptional regulator
931	 66.67	0	917421..917666	-	81	119383688	-	Pden_0937	-	hypothetical protein
932	 67.08	0	917772..918974	+	400	119383689	-	Pden_0938	-	aminotransferase, class I and II
933	 66.45	0	919032..920438	-	468	119383690	aspA	Pden_0939	-	aspartate ammonia-lyase
934	 66.89	0	920599..921495	-	298	119383691	-	Pden_0940	-	LysR family transcriptional regulator
935	 72.37	+1	921708..922742	+	344	119383692	-	Pden_0941	-	malate/L-lactate dehydrogenase
936	 63.01	0	922739..923203	-	154	119383693	-	Pden_0942	-	AsnC family transcriptional regulator
937	 69.65	0	923313..926732	+	1139	119383694	-	Pden_0943	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
938	 70.16	0	926862..927233	+	123	119383695	-	Pden_0944	-	TetR family transcriptional regulator
939	 68.96	0	927765..928766	+	333	119383696	-	Pden_0945	-	substrate-binding region of ABC-type glycine betaine transport system
940	 66.44	0	928843..929733	+	296	119383697	-	Pden_0946	-	binding-protein-dependent transport systems inner membrane component
941	 66.76	0	929726..930772	+	348	119383698	-	Pden_0947	-	glycine betaine/L-proline ABC transporter, ATPase subunit
942	 71.82	+1	930853..932481	+	542	119383699	-	Pden_0948	-	acyl-CoA dehydrogenase domain-containing protein
943	 67.85	0	932488..933501	-	337	119383700	-	Pden_0949	-	DNA/RNA non-specific endonuclease
944	 68.73	0	933691..935244	-	517	119383701	-	Pden_0950	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
945	 66.67	0	935339..937603	-	754	119383702	-	Pden_0951	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
946	 67.42	0	937769..938428	-	219	119383703	-	Pden_0952	-	DSBA oxidoreductase
947	 71.99	+1	938429..939892	-	487	119383704	-	Pden_0953	-	AMP-dependent synthetase and ligase
948	 63.29	0	940098..940304	-	68	119383705	-	Pden_0954	-	cold-shock DNA-binding domain-containing protein
949	 66.36	0	940532..942478	-	648	119383706	-	Pden_0955	-	threonyl-tRNA synthetase
950	 70.80	+1	942649..943398	+	249	119383707	-	Pden_0956	-	hypothetical protein
951	 64.36	0	943441..944784	-	447	119383708	-	Pden_0957	-	polyhydroxyalkanoate depolymerase, intracellular
952	 68.56	0	944898..947219	+	773	119383709	-	Pden_0958	-	poly(R)-hydroxyalkanoic acid synthase, class I
953	 66.24	0	947333..947806	+	157	119383710	-	Pden_0959	-	hypothetical protein
954	 63.95	0	947955..948542	+	195	119383711	-	Pden_0960	-	polyhydroxyalkonate synthesis repressor, PhaR
955	 64.17	0	948709..949788	-	359	119383712	-	Pden_0961	-	phage integrase family protein
956	 62.39	0	949785..950018	-	77	119383713	-	Pden_0962	-	hypothetical protein
957	 69.82	0	950015..950743	-	242	119383714	-	Pden_0963	-	hypothetical protein
958	 64.63	0	950740..951180	-	146	119383715	-	Pden_0964	-	hypothetical protein
959	 65.93	0	951170..951442	-	90	119383716	-	Pden_0965	-	hypothetical protein
960	 65.57	0	951442..952170	-	242	119383717	-	Pden_0966	-	hypothetical protein
961	 66.54	0	952167..952967	-	266	119383718	-	Pden_0967	-	hypothetical protein
962	 60.37	-1	952964..953392	-	142	119383719	-	Pden_0968	-	hypothetical protein
963	 65.61	0	953392..956043	-	883	119383720	-	Pden_0969	-	DNA methylase N-4/N-6 domain-containing protein
964	 65.06	0	956047..957165	-	372	119383721	-	Pden_0970	-	DNA polymerase III, beta subunit
965	 69.95	0	957302..957514	-	70	119383722	-	Pden_0971	-	hypothetical protein
966	 65.52	0	957514..957774	-	86	119383723	-	Pden_0972	-	hypothetical protein
967	 60.76	-1	958079..958315	+	78	119383724	-	Pden_0973	-	hypothetical protein
968	 62.31	-1	958305..958832	-	175	119383725	-	Pden_0974	-	hypothetical protein
969	 58.99	-1	959004..959615	-	203	119383726	-	Pden_0975	-	putative phage repressor
970	 56.63	-2	959622..959930	-	102	119383727	-	Pden_0976	-	hypothetical protein
971	 66.37	0	959968..960303	+	111	119383728	-	Pden_0977	-	hypothetical protein
972	 55.95	-2	960623..960958	-	111	119383729	-	Pden_0978	-	hypothetical protein
973	 68.84	0	961090..961365	+	91	119383730	-	Pden_0979	-	hypothetical protein
974	 62.56	0	961362..961556	+	64	119383731	-	Pden_0980	-	hypothetical protein
975	 68.15	0	961553..962695	+	380	119383732	-	Pden_0981	-	hypothetical protein
976	 60.64	-1	962688..962936	+	82	119383733	-	Pden_0982	-	hypothetical protein
977	 65.31	0	962933..964771	+	612	119383734	-	Pden_0983	-	P4 family phage/plasmid primase
978	 67.98	0	965147..965905	+	252	119383735	-	Pden_0984	-	hypothetical protein
979	 64.96	0	966075..966425	+	116	119383736	-	Pden_0985	-	HNH endonuclease
980	 61.69	-1	966475..966735	+	86	119383737	-	Pden_0986	-	hypothetical protein
981	 63.89	0	966910..967413	+	167	119383738	-	Pden_0987	-	resolvase domain-containing protein
982	 65.68	0	967403..969124	+	573	119383739	-	Pden_0988	-	phage terminase
983	 67.26	0	969124..970461	+	445	119383740	-	Pden_0989	-	HK97 family phage portal protein
984	 68.21	0	970448..971290	+	280	119383741	-	Pden_0990	-	peptidase S14, ClpP
985	 67.19	0	971302..972651	+	449	119383742	-	Pden_0991	-	HK97 family phage major capsid protein
986	 67.64	0	972709..973017	+	102	119383743	-	Pden_0992	-	hypothetical protein
987	 67.68	0	973059..973553	+	164	119383744	-	Pden_0993	-	hypothetical protein
988	 65.21	0	973522..974070	+	182	119383745	-	Pden_0994	-	hypothetical protein
989	 67.52	0	974064..974414	+	116	119383746	-	Pden_0995	-	hypothetical protein
990	 61.76	-1	974411..974818	+	135	119383747	-	Pden_0996	-	gene transfer agent
66.57	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.