IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.57   STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
35	 67.56	0	28793..29467	-	224	119382792	-	Pden_0035	-	TenA family transcription regulator
36	 65.43	0	29464..30435	-	323	119382793	-	Pden_0036	-	NlpA lipoprotein
37	 71.86	+1	30432..31394	-	320	119382794	-	Pden_0037	-	UBA/THIF-type NAD/FAD binding protein
38	 67.34	0	31391..31987	-	198	119382795	thiE	Pden_0038	-	thiamine-phosphate pyrophosphorylase
39	 69.41	0	31984..32748	-	254	119382796	thiG	Pden_0039	-	thiazole synthase
40	 71.72	+1	32750..32947	-	65	119382797	-	Pden_0040	-	thiamine biosynthesis protein ThiS
41	 70.04	0	32931..33908	-	325	119382798	-	Pden_0041	-	FAD dependent oxidoreductase
42	 71.35	+1	33905..34759	-	284	119382799	-	Pden_0042	-	phosphomethylpyrimidine kinase
43	 67.66	0	35028..35630	+	200	119382800	-	Pden_0043	-	HAD family hydrolase
44	 62.26	-1	35726..36292	+	188	119382801	-	Pden_0044	-	hypothetical protein
45	 64.83	0	36357..36791	-	144	119382802	-	Pden_0045	-	3-dehydroquinate dehydratase, type II
46	 68.66	0	36818..37519	-	233	119382803	-	Pden_0046	-	two component transcriptional regulator
47	 70.18	0	37512..39392	-	626	119382804	-	Pden_0047	-	PAS/PAC sensor hybrid histidine kinase
48	 65.10	0	39505..41481	+	658	119382805	-	Pden_0048	-	AMP-dependent synthetase and ligase
49	 62.84	0	41478..42287	+	269	119382806	-	Pden_0049	-	ABC transporter related
50	 64.53	0	42298..43278	+	326	119382807	-	Pden_0050	-	inner-membrane translocator
51	 63.96	0	43354..44460	+	368	119382808	-	Pden_0051	-	inner-membrane translocator
52	 63.31	0	44505..45785	+	426	119382809	-	Pden_0052	-	Fis family transcriptional regulator
53	 64.85	0	45839..46663	+	274	119382810	-	Pden_0053	-	ABC transporter related
54	 68.39	0	46682..47899	+	405	119382811	-	Pden_0054	-	phenylacetate-CoA ligase, putative
55	 60.32	-1	48379..48504	-	41	119382812	-	Pden_0055	-	ribosomal protein L36
56	 70.02	0	48847..49710	+	287	119382813	-	Pden_0056	-	N-formylglutamate amidohydrolase
57	 67.79	0	49729..50616	+	295	119382814	-	Pden_0057	-	band 7 protein
58	 67.93	0	50750..51301	+	183	119382815	-	Pden_0058	-	NUDIX hydrolase
59	 68.41	0	51353..51982	+	209	119382816	-	Pden_0059	-	glutathione S-transferase domain-containing protein
60	 71.63	+1	51983..52687	-	234	119382817	-	Pden_0060	-	orotidine 5'-phosphate decarboxylase
61	 64.86	0	52790..53563	+	257	119382818	-	Pden_0061	-	hypothetical protein
62	 66.44	0	53670..56297	+	875	119382819	-	Pden_0062	-	ATPase
63	 65.33	0	56428..57324	+	298	119382820	-	Pden_0063	-	putative sulfite oxidase subunit YedY
64	 63.96	0	57324..57950	+	208	119382821	-	Pden_0064	-	ferric reductase domain-containing protein
65	 55.67	-2	57925..58224	+	99	119382822	-	Pden_0065	-	hypothetical protein
66	 58.63	-1	64006..64503	-	165	119382823	-	Pden_0066	-	hypothetical protein
67	 65.52	0	64712..65059	+	115	119382824	-	Pden_0067	-	IS66 Orf2 family protein
68	 64.83	0	65122..66750	+	542	119382825	-	Pden_0068	-	transposase IS66
69	 58.92	-1	66750..67046	+	98	119382826	-	Pden_0069	-	hypothetical protein
70	 57.61	-2	67024..67266	-	80	119382827	-	Pden_0070	-	hypothetical protein
71	 55.43	-2	67303..67578	+	91	119382828	-	Pden_0071	-	hypothetical protein
72	 64.76	0	67679..69196	+	505	119382829	-	Pden_0072	-	CHAD domain-containing protein
73	 60.93	-1	69196..69945	+	249	119382830	-	Pden_0073	-	cobyrinic acid a,c-diamide synthase
74	 66.23	0	69942..70397	+	151	119382831	-	Pden_0074	-	adenylate cyclase
75	 60.76	-1	70419..70706	-	95	119382832	-	Pden_0075	-	hypothetical protein
76	 51.94	-2	70813..71199	-	128	119382833	-	Pden_0076	-	hypothetical protein
77	 62.86	0	71248..71667	+	139	119382834	-	Pden_0077	-	transposase
78	 61.40	-1	71795..72022	+	75	119382835	-	Pden_0078	-	putative transposase
79	 63.60	0	72151..72867	+	238	119382836	-	Pden_0079	-	two component transcriptional regulator
80	 64.62	0	72869..75208	+	779	119382837	-	Pden_0080	-	PAS/PAC sensor hybrid histidine kinase
81	 61.19	-1	75555..77324	+	589	119382838	-	Pden_0081	-	regulatory protein, LuxR
82	 60.58	-1	77426..77737	+	103	119382839	-	Pden_0082	-	hypothetical protein
83	 58.26	-1	77791..78135	-	114	119382840	-	Pden_0083	-	hypothetical protein
84	 62.75	0	78314..78568	+	84	119382841	-	Pden_0084	-	hypothetical protein
85	 62.32	-1	79049..79255	+	68	119382842	-	Pden_0085	-	hypothetical protein
86	 60.14	-1	79239..79514	+	91	119382843	-	Pden_0086	-	hypothetical protein
87	 68.35	0	79557..80267	+	236	119382844	-	Pden_0087	-	acylneuraminate cytidylyltransferase
88	 69.44	0	80264..81310	+	348	119382845	-	Pden_0088	-	flagellin modification protein FlmD
89	 55.56	-2	81485..82816	+	443	119382846	-	Pden_0089	-	hypothetical protein
90	 58.43	-1	82819..83619	+	266	119382847	-	Pden_0090	-	hypothetical protein
91	 62.16	-1	83710..84885	-	391	119382848	-	Pden_0091	-	hypothetical protein
92	 64.32	0	85055..86716	-	553	119382849	-	Pden_0092	-	hypothetical protein
93	 60.18	-1	86854..87855	-	333	119382850	-	Pden_0093	-	polysaccharide biosynthesis protein CapD
94	 63.96	0	88201..88311	-	36	119382851	-	Pden_0094	-	transposase IS116/IS110/IS902
95	 60.88	-1	88450..89019	-	189	119382852	-	Pden_0095	-	resolvase domain-containing protein
96	 61.70	-1	89344..89625	+	93	119382853	-	Pden_0096	-	hypothetical protein
97	 67.60	0	89793..90434	-	213	119382854	-	Pden_0097	-	hypothetical protein
98	 59.76	-1	90443..90688	-	81	119382855	-	Pden_0098	-	conjugal transfer TraD family protein
99	 65.19	0	90690..91028	-	112	119382856	-	Pden_0099	-	hypothetical protein
100	 65.53	0	91189..94185	+	998	119382857	-	Pden_0100	-	MobA/MobL protein
101	 53.26	-2	94406..94681	-	91	119382858	-	Pden_0101	-	hypothetical protein
102	 64.35	0	94879..95094	+	71	119382859	-	Pden_0102	-	phage transcriptional regulator, AlpA
103	 59.15	-1	95326..95817	+	163	119382860	-	Pden_0103	-	hypothetical protein
104	 63.22	0	95814..96074	+	86	119382861	-	Pden_0104	-	hypothetical protein
105	 64.61	0	96094..97743	+	549	119382862	-	Pden_0105	-	recombinase
106	 65.66	0	97636..99429	-	597	119382863	-	Pden_0106	-	recombinase
107	 67.08	0	99430..99915	+	161	119382864	-	Pden_0107	-	hypothetical protein
108	 66.38	0	100054..101091	-	345	119382865	-	Pden_0108	-	aldo/keto reductase
109	 68.89	0	101268..102167	+	299	119382866	-	Pden_0109	-	AraC-like transcriptional regulator
110	 53.81	-2	102305..102685	-	126	119382867	-	Pden_0110	-	hypothetical protein
111	 48.34	-2	102697..103602	-	301	119382868	-	Pden_0111	-	hypothetical protein
112	 49.20	-2	103599..105035	-	478	119382869	-	Pden_0112	-	hypothetical protein
113	 53.67	-2	105698..106597	-	299	119382870	-	Pden_0113	-	TIR protein
114	 61.65	-1	106933..107211	-	92	119382871	-	Pden_0114	-	SH3 type 3 domain-containing protein
115	 62.68	0	107337..108014	-	225	119382872	-	Pden_0115	-	yecA family protein
116	 63.84	0	108141..108776	-	211	119382873	-	Pden_0116	-	hexapaptide repeat-containing transferase
117	 65.27	0	109037..109393	+	118	119382874	-	Pden_0117	-	hypothetical protein
118	 62.71	0	109402..109755	+	117	119382875	-	Pden_0118	-	hypothetical protein
119	 64.27	0	109994..110410	+	138	119382876	-	Pden_0119	-	hypothetical protein
120	 65.93	0	110943..111620	+	225	119382877	-	Pden_0120	-	DNA methylase N-4/N-6 domain-containing protein
121	 69.42	0	111692..111982	+	96	119382878	-	Pden_0121	-	hypothetical protein
122	 60.61	-1	112280..112741	+	153	119382879	-	Pden_0122	-	hypothetical protein
123	 65.21	0	113488..113898	+	136	119382880	-	Pden_0123	-	single-strand binding protein
124	 66.67	0	113876..114208	+	110	119382881	-	Pden_0124	-	hypothetical protein
125	 64.71	0	114444..114647	+	67	119382882	-	Pden_0125	-	hypothetical protein
126	 63.38	0	115048..115260	+	70	119382883	-	Pden_0126	-	hypothetical protein
127	 69.11	0	115281..115730	-	149	119382884	-	Pden_0127	-	hypothetical protein
128	 66.29	0	115825..116091	-	88	119382885	-	Pden_0128	-	hypothetical protein
129	 68.56	0	116238..116501	-	87	119382886	-	Pden_0129	-	hypothetical protein
130	 63.71	0	116687..116923	-	78	119382887	-	Pden_0130	-	XRE family transcriptional regulator
131	 67.41	0	117115..117384	+	89	119382888	-	Pden_0131	-	hypothetical protein
132	 67.36	0	117381..118250	+	289	119382889	-	Pden_0132	-	putative replication protein A
133	 68.06	0	118506..119006	+	166	119382890	-	Pden_0133	-	hypothetical protein
134	 61.85	-1	119003..120622	+	539	119382891	-	Pden_0134	-	transposase IS116/IS110/IS902 family protein
66.57	MEAN

4.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.