version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 755 66.34 0 745851..746471 + 206 119383512 rplD Pden_0760 - 50S ribosomal protein L4 756 59.60 -1 746468..746764 + 98 119383513 rplW Pden_0761 - 50S ribosomal protein L23 757 64.76 0 746860..747699 + 279 119383514 rplB Pden_0762 - 50S ribosomal protein L2 758 57.35 -2 747703..747981 + 92 119383515 rpsS Pden_0763 - 30S ribosomal protein S19 759 59.84 -1 747987..748367 + 126 119383516 rplV Pden_0764 - 50S ribosomal protein L22 760 66.39 0 748367..749089 + 240 119383517 rpsC Pden_0765 - 30S ribosomal protein S3 761 65.22 0 749102..749515 + 137 119383518 rplP Pden_0766 - 50S ribosomal protein L16 762 60.22 -1 749633..749911 + 92 119383519 - Pden_0767 - ribosomal protein L29 763 57.83 -2 749924..750172 + 82 119383520 rpsQ Pden_0768 - 30S ribosomal protein S17 764 63.41 0 750236..750604 + 122 119383521 rplN Pden_0769 - 50S ribosomal protein L14 765 62.75 0 750604..750909 + 101 119383522 rplX Pden_0770 - 50S ribosomal protein L24 766 60.96 -1 750909..751469 + 186 119383523 rplE Pden_0771 - 50S ribosomal protein L5 767 59.48 -1 751488..751793 + 101 119383524 rpsN Pden_0772 - 30S ribosomal protein S14 768 62.16 -1 751803..752201 + 132 119383525 rpsH Pden_0773 - 30S ribosomal protein S8 769 63.30 0 752213..752746 + 177 119383526 rplF Pden_0774 - 50S ribosomal protein L6 770 62.78 0 752758..753117 + 119 119383527 rplR Pden_0775 - 50S ribosomal protein L18 771 68.08 0 753236..753802 + 188 119383528 rpsE Pden_0776 - 30S ribosomal protein S5 772 62.96 0 753815..754003 + 62 119383529 rpmD Pden_0777 - 50S ribosomal protein L30 773 67.08 0 754133..754855 + 240 119383530 - Pden_0778 - hypothetical protein 774 66.67 0 755010..755495 + 161 119383531 rplO Pden_0779 - 50S ribosomal protein L15 775 64.19 0 755600..756973 + 457 119383532 secY Pden_0780 - preprotein translocase subunit SecY 776 65.60 0 757011..757667 + 218 119383533 - Pden_0781 - adenylate kinase 777 64.50 0 757831..758199 + 122 162139378 rpsM Pden_0782 - 30S ribosomal protein S13 778 65.38 0 758212..758601 + 129 119383535 - Pden_0783 - 30S ribosomal protein S11 779 62.83 0 758721..759737 + 338 119383536 - Pden_0784 - DNA-directed RNA polymerase subunit alpha 780 63.83 0 759854..760276 + 140 119383537 rplQ Pden_0785 - 50S ribosomal protein L17 781 60.95 -1 760626..761237 + 203 119383538 - Pden_0786 - response regulator receiver protein 782 64.64 0 761305..761895 + 196 119383539 - Pden_0787 - N-acyl-L-homoserine lactone synthetase-like 783 67.64 0 761957..763285 + 442 119383540 - Pden_0788 - recombination factor protein RarA 784 68.53 0 763282..763656 + 124 119383541 - Pden_0789 - CrcB protein 785 69.34 0 763653..764699 + 348 119383542 - Pden_0790 - RluA family pseudouridine synthase 786 70.74 0 764696..765358 + 220 119383543 - Pden_0791 - HAD family hydrolase 787 69.20 0 765351..766061 + 236 119383544 - Pden_0792 - ATP12 ATPase 788 64.52 0 766214..767239 + 341 119383545 - Pden_0793 - cationic amino acid ABC transporter, periplasmic binding protein 789 64.27 0 767355..768608 + 417 119383546 - Pden_0794 - polar amino acid ABC transporter, inner membrane subunit 790 66.12 0 768610..770064 + 484 119383547 - Pden_0795 - polar amino acid ABC transporter, inner membrane subunit 791 61.76 -1 770075..770848 + 257 119383548 - Pden_0796 - ABC transporter related 792 66.67 0 770948..771850 + 300 119383549 - Pden_0797 - hypothetical protein 793 64.81 0 771923..772783 - 286 119383550 - Pden_0798 - aminotransferase, class IV 794 65.11 0 772881..773906 + 341 119383551 - Pden_0799 - citrate (pro-3S)-lyase 795 69.69 0 774324..775946 - 540 119383552 - Pden_0800 - ABC transporter related 796 69.37 0 775943..776755 - 270 119383553 - Pden_0801 - binding-protein-dependent transport systems inner membrane component 797 68.90 0 776752..777690 - 312 119383554 - Pden_0802 - binding-protein-dependent transport systems inner membrane component 798 68.32 0 777739..779373 - 544 119383555 - Pden_0803 - protein of unknown function DUF894, DitE 799 68.89 0 779632..780933 + 433 119383556 - Pden_0804 - D-amino acid dehydrogenase small subunit 800 66.28 0 780997..781257 - 86 119383557 - Pden_0805 - transglycosylase-associated protein 801 64.47 0 781254..781526 - 90 119383558 - Pden_0806 - hypothetical protein 802 70.01 0 781572..782318 + 248 119383559 - Pden_0807 - ErfK/YbiS/YcfS/YnhG family protein 803 72.79 +1 782443..782997 + 184 119383560 - Pden_0808 - hypothetical protein 804 68.53 0 783068..783979 + 303 119383561 - Pden_0809 - lytic transglycosylase, catalytic 805 66.46 0 784055..785524 - 489 119383562 - Pden_0810 - extracellular solute-binding protein 806 63.35 0 785581..786273 - 230 119383563 - Pden_0811 - phosphatidylcholine synthase 807 69.86 0 786368..787243 - 291 119383564 - Pden_0812 - phosphoserine phosphatase SerB 808 67.01 0 787437..788591 + 384 119383565 - Pden_0813 - phosphoserine aminotransferase 809 64.72 0 788704..790293 + 529 119383566 - Pden_0814 - D-3-phosphoglycerate dehydrogenase 810 69.96 0 790346..791074 + 242 119383567 - Pden_0815 - metallophosphoesterase 811 69.43 0 791211..792839 + 542 119383568 - Pden_0816 - sodium-dependent inorganic phosphate (Pi) transporter 812 65.15 0 793035..793496 + 153 119383569 - Pden_0817 - CreA family protein 813 59.16 -1 793728..794060 + 110 119383570 - Pden_0818 - hemimethylated DNA binding protein 814 69.71 0 794073..794630 - 185 119383571 - Pden_0819 - putative anti-sigma regulatory factor, serine/threonine protein kinase 815 67.76 0 794627..794992 - 121 119383572 - Pden_0820 - anti-sigma-factor antagonist 816 70.37 0 795231..795608 + 125 119383573 - Pden_0821 - hypothetical protein 817 66.63 0 795629..798091 + 820 119383574 - Pden_0822 - peptidase domain-containing protein 818 66.17 0 798302..799714 + 470 119383575 - Pden_0823 - hypothetical protein 819 66.67 0 799729..800688 + 319 119383576 - Pden_0824 - hypothetical protein 820 71.62 +1 800699..801505 + 268 119383577 - Pden_0825 - transglutaminase domain-containing protein 821 64.82 0 801536..802294 + 252 119383578 - Pden_0826 - 20S proteasome, A and B subunits 822 71.18 +1 802307..804943 - 878 119383579 - Pden_0827 - DNA mismatch repair protein 823 69.29 0 805100..805939 + 279 119383580 - Pden_0828 - hydratase/decarboxylase 824 65.85 0 806084..807190 + 368 119383581 - Pden_0829 - extracellular solute-binding protein 825 64.85 0 807211..808092 + 293 119383582 - Pden_0830 - binding-protein-dependent transport systems inner membrane component 826 65.90 0 808089..808871 + 260 119383583 - Pden_0831 - binding-protein-dependent transport systems inner membrane component 827 70.53 0 808868..809902 + 344 119383584 - Pden_0832 - ABC transporter related 828 68.24 0 810408..812123 + 571 119383585 - Pden_0833 - hemolysin-type calcium-binding region 829 70.54 0 812160..812933 - 257 119383586 - Pden_0834 - WecB/TagA/CpsF family glycosyl transferase 830 65.26 0 813051..814475 + 474 119383587 - Pden_0835 - hypothetical protein 831 70.52 0 814575..820856 + 2093 119383588 - Pden_0836 - beta-ketoacyl synthase 832 67.88 0 820859..821851 + 330 119383589 - Pden_0837 - glycosyl transferase family protein 833 70.34 0 821848..826473 + 1541 119383590 - Pden_0838 - amino acid adenylation domain-containing protein 834 72.60 +1 826470..827093 + 207 119383591 - Pden_0839 - 4'-phosphopantetheinyl transferase 835 69.90 0 827074..828279 - 401 119383592 - Pden_0840 - glycosyl transferase, group 1 836 63.38 0 828462..828674 + 70 119383593 - Pden_0841 - hypothetical protein 837 65.95 0 828668..829366 - 232 119383594 - Pden_0842 - undecaprenyl-phosphate galactose phosphotransferase 838 65.11 0 829672..830442 + 256 119383595 - Pden_0843 - hypothetical protein 839 71.86 +1 830439..831266 - 275 119383596 - Pden_0844 - glycosyl transferase family protein 840 71.68 +1 831535..832272 + 245 119383597 - Pden_0845 - ATPases involved in chromosome partitioning-like 841 67.62 0 832333..833799 + 488 119383598 - Pden_0846 - lipopolysaccharide biosynthesis 842 67.47 0 833799..835172 + 457 119383599 - Pden_0847 - polysaccharide biosynthesis protein 843 66.49 0 835257..837539 + 760 119383600 - Pden_0848 - malic enzyme 844 64.50 0 837600..838199 - 199 119383601 - Pden_0849 - putative outer membrane protein 845 67.80 0 838421..839389 - 322 119383602 - Pden_0850 - rhodanese domain-containing protein 846 66.50 0 839444..840040 + 198 119383603 - Pden_0851 - nicotinamidase 847 65.44 0 840040..841347 + 435 119383604 - Pden_0852 - nicotinate phosphoribosyltransferase 848 67.15 0 841517..843187 - 556 119383605 nadE Pden_0853 - NAD synthetase 849 67.83 0 843319..844785 + 488 119383606 - Pden_0854 - MORN repeat-containing protein 850 66.27 0 844892..845389 - 165 119383607 - Pden_0855 - xanthine-guanine phosphoribosyltransferase 851 66.67 0 845399..846001 - 200 119383608 - Pden_0856 - lysine exporter protein LysE/YggA 852 64.13 0 846011..846838 - 275 119383609 - Pden_0857 - enoyl-(acyl carrier protein) reductase 853 64.10 0 846922..847584 + 220 119383610 - Pden_0858 - pyridoxamine-phosphate oxidase 854 65.32 0 847715..848308 + 197 119383611 - Pden_0859 - cold-shock DNA-binding domain-containing protein 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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