version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 649 64.57 0 631740..632120 + 126 119383406 - Pden_0654 - hypothetical protein 650 66.73 0 632113..633768 + 551 119383407 - Pden_0655 - nitrite/sulfite reductase hemoprotein beta subunit 651 67.49 0 633761..634492 + 243 119383408 - Pden_0656 - phosphoadenosine phosphosulfate reductase 652 68.82 0 634489..634860 + 123 119383409 - Pden_0657 - hypothetical protein 653 64.28 0 634914..635750 + 278 119383410 - Pden_0658 - ferredoxin--NADP(+) reductase 654 66.51 0 635875..638430 + 851 119383411 - Pden_0659 - DNA topoisomerase I 655 67.01 0 638639..640381 + 580 119383412 - Pden_0660 - gamma-glutamyltransferase 656 67.82 0 640375..640722 - 115 119383413 - Pden_0661 - hypothetical protein 657 64.35 0 641089..642597 - 502 119383414 - Pden_0662 - amino acid carrier protein 658 66.86 0 642700..644766 - 688 119383415 - Pden_0663 - TRAP transporter, 4TM/12TM fusion protein 659 67.27 0 644849..645850 - 333 119383416 - Pden_0664 - TRAP transporter solute receptor TAXI family protein 660 67.61 0 646155..647639 + 494 119383417 - Pden_0665 - phosphate transporter 661 64.41 0 647851..649314 + 487 119383418 - Pden_0666 - amino acid carrier protein 662 70.67 0 649453..650526 - 357 119383419 - Pden_0667 - hypothetical protein 663 67.68 0 650523..651113 - 196 119383420 - Pden_0668 - TetR family transcriptional regulator 664 69.30 0 651205..652191 + 328 119383421 - Pden_0669 - 3-oxoacyl-(acyl-carrier-protein) synthase 665 72.24 +1 652191..653123 + 310 119383422 - Pden_0670 - NAD-dependent epimerase/dehydratase 666 72.03 +1 653111..653893 + 260 119383423 - Pden_0671 - beta-lactamase domain-containing protein 667 68.70 0 653890..655170 + 426 119383424 - Pden_0672 - putative adenylate-forming enzyme 668 69.30 0 655286..656311 - 341 119383425 - Pden_0673 - regulatory protein, LacI 669 65.99 0 656409..657740 + 443 119383426 - Pden_0674 - xanthine/uracil/vitamin C permease 670 70.03 0 657740..659137 + 465 119383427 - Pden_0675 - amidohydrolase 671 68.78 0 659134..659844 + 236 119383428 - Pden_0676 - hypothetical protein 672 72.05 +1 659972..660733 - 253 119383429 - Pden_0677 - putative hydantoin racemase protein 673 60.61 -1 660737..662089 - 450 119383430 - Pden_0678 - permease for cytosine/purines, uracil, thiamine, allantoin 674 68.21 0 662118..662828 - 236 119383431 - Pden_0679 - Asp/Glu racemase 675 65.64 0 662953..663633 + 226 119383432 - Pden_0680 - GntR family transcriptional regulator 676 70.77 0 663687..664271 + 194 119383433 - Pden_0681 - hypothetical protein 677 67.65 0 664351..664755 + 134 119383434 - Pden_0682 - 4-hydroxybenzoyl-CoA thioesterase 678 66.09 0 664857..665552 + 231 119383435 - Pden_0683 - MotA/TolQ/ExbB proton channel 679 69.68 0 665554..666018 + 154 119383436 - Pden_0684 - biopolymer transport protein ExbD/TolR 680 74.11 +1 666022..667566 + 514 119383437 - Pden_0685 - TolA family protein 681 66.02 0 667568..668953 + 461 119383438 tolB Pden_0686 - translocation protein TolB 682 67.05 0 668964..669485 + 173 119383439 - Pden_0687 - OmpA domain-containing protein 683 70.75 0 669482..670411 + 309 119383440 - Pden_0688 - hypothetical protein 684 73.90 +1 670401..671630 + 409 119383441 - Pden_0689 - tRNA(Ile)-lysidine synthetase 685 64.98 0 671691..673586 + 631 119383442 - Pden_0690 - ATP-dependent metalloprotease FtsH 686 66.98 0 673915..674232 + 105 119383443 - Pden_0691 - chorismate mutase 687 67.88 0 674269..674679 - 136 119383444 - Pden_0692 - hypothetical protein 688 69.98 0 674672..675697 - 341 119383445 ruvB Pden_0693 - Holliday junction DNA helicase B 689 69.85 0 675694..676572 - 292 119383446 - Pden_0694 - peptidase M48, Ste24p 690 71.43 +1 676578..677249 - 223 119383447 ruvA Pden_0695 - Holliday junction DNA helicase motor protein 691 69.09 0 677260..677754 - 164 119383448 - Pden_0696 - crossover junction endodeoxyribonuclease RuvC 692 66.63 0 677879..680719 + 946 119383449 - Pden_0697 - putative monovalent cation/H+ antiporter subunit A 693 66.38 0 680719..681072 + 117 119383450 - Pden_0698 - putative monovalent cation/H+ antiporter subunit C 694 67.61 0 681069..682661 + 530 119383451 - Pden_0699 - putative monovalent cation/H+ antiporter subunit D 695 68.29 0 682658..683149 + 163 119383452 - Pden_0700 - putative monovalent cation/H+ antiporter subunit E 696 58.52 -1 683146..683415 + 89 119383453 - Pden_0701 - multiple resistance and pH regulation protein F 697 67.19 0 683425..683808 + 127 119383454 - Pden_0702 - monovalent cation/proton antiporter, MnhG/PhaG subunit 698 71.06 +1 683815..684087 + 90 119383455 - Pden_0703 - hypothetical protein 699 67.92 0 684138..685013 - 291 119383456 - Pden_0704 - dihydrodipicolinate synthase 700 73.31 +1 685120..687270 + 716 119383457 - Pden_0705 - lytic transglycosylase, catalytic 701 67.40 0 687224..688183 - 319 119383458 - Pden_0706 - hypothetical protein 702 68.31 0 688246..689034 - 262 119383459 - Pden_0707 - inositol monophosphatase 703 67.38 0 689103..689804 - 233 119383460 - Pden_0708 - UbiC transcription regulator-associated domain-containing protein 704 70.04 0 689801..691162 - 453 119383461 - Pden_0709 - N-formimino-L-glutamate deiminase 705 67.91 0 691259..692461 + 400 119383462 - Pden_0710 - imidazolonepropionase 706 70.04 0 692454..693995 + 513 119383463 - Pden_0711 - histidine ammonia-lyase 707 67.05 0 693992..694783 + 263 119383464 - Pden_0712 - N-formylglutamate amidohydrolase 708 69.54 0 694780..695928 + 382 119383465 - Pden_0713 - L-carnitine dehydratase/bile acid-inducible protein F 709 68.66 0 695925..697079 + 384 119383466 - Pden_0714 - butyryl-CoA dehydrogenase 710 66.31 0 697092..698756 + 554 119383467 - Pden_0715 - urocanate hydratase 711 63.98 0 698821..699639 + 272 119383468 - Pden_0716 - extracellular solute-binding protein 712 67.28 0 699697..700344 + 215 119383469 - Pden_0717 - polar amino acid ABC transporter, inner membrane subunit 713 64.56 0 700344..701006 + 220 119383470 - Pden_0718 - polar amino acid ABC transporter, inner membrane subunit 714 64.98 0 701011..701781 + 256 119383471 - Pden_0719 - ABC transporter related 715 70.11 0 701997..703100 + 367 119383472 - Pden_0720 - NADH:flavin oxidoreductase/NADH oxidase 716 67.36 0 703138..704292 - 384 119383473 - Pden_0721 - patatin 717 60.57 -1 704289..704567 - 92 119383474 - Pden_0722 - hypothetical protein 718 70.19 0 704594..705871 + 425 119383475 - Pden_0723 - hypothetical protein 719 71.44 +1 705953..706936 + 327 119383476 - Pden_0724 - LysR family transcriptional regulator 720 71.50 +1 706917..707765 - 282 119383477 - Pden_0725 - TonB family protein 721 68.44 0 707762..708325 - 187 119383478 - Pden_0726 - biopolymer transport protein ExbD/TolR 722 73.61 +1 708329..709624 - 431 119383479 - Pden_0727 - MotA/TolQ/ExbB proton channel 723 71.19 +1 709715..710752 - 345 119383480 - Pden_0728 - FAD-binding 9, siderophore-interacting domain-containing protein 724 72.55 +1 710813..711985 - 390 119383481 - Pden_0729 - aminotransferase, class V 725 68.39 0 712246..713985 + 579 119383482 - Pden_0730 - ABC transporter related 726 68.76 0 713985..714701 + 238 119383483 - Pden_0731 - glycine cleavage T protein (aminomethyl transferase) 727 68.50 0 714698..715789 + 363 119383484 - Pden_0732 - DNA-directed DNA polymerase 728 70.78 0 715780..716727 - 315 119383485 - Pden_0733 - hypothetical protein 729 64.29 0 716936..718111 + 391 119383486 - Pden_0734 - elongation factor Tu 730 66.89 0 718358..719248 + 296 119383487 - Pden_0735 - carboxymethylenebutenolidase 731 68.45 0 719300..719692 + 130 119383488 - Pden_0736 - glyoxalase/bleomycin resistance protein/dioxygenase 732 67.63 0 719689..720102 + 137 119383489 - Pden_0737 - glutathione-dependent formaldehyde-activating, GFA 733 67.89 0 720338..720991 + 217 119383490 - Pden_0738 - hexapaptide repeat-containing transferase 734 66.94 0 721049..722890 + 613 119383491 - Pden_0739 - ABC transporter related 735 70.50 0 723027..723938 + 303 119383492 - Pden_0740 - hypothetical protein 736 61.38 -1 723963..724208 + 81 119383493 - Pden_0741 - preprotein translocase, SecE subunit 737 63.89 0 724404..724943 + 179 119383494 - Pden_0742 - NusG antitermination factor 738 63.58 0 725043..725495 + 150 119383495 rplK Pden_0743 - 50S ribosomal protein L11 739 65.81 0 725499..726200 + 233 119383496 rplA Pden_0744 - 50S ribosomal protein L1 740 63.95 0 726682..727197 + 171 119383497 rplJ Pden_0745 - 50S ribosomal protein L10 741 61.07 -1 727265..727639 + 124 119383498 rplL Pden_0746 - 50S ribosomal protein L7/L12 742 64.55 0 727881..732029 + 1382 119383499 rpoB Pden_0747 - DNA-directed RNA polymerase subunit beta 743 56.73 -2 732032..732343 + 103 119383500 - Pden_0748 - hypothetical protein 744 64.34 0 732340..736548 + 1402 119383501 - Pden_0749 - DNA-directed RNA polymerase subunit beta' 745 58.33 -1 736780..737055 + 91 119383502 - Pden_0750 - hypothetical protein 746 68.58 0 737215..738156 + 313 119383503 - Pden_0751 - hypothetical protein 747 68.45 0 738156..738995 + 279 119383504 - Pden_0752 - hypothetical protein 748 61.83 -1 739289..739660 + 123 119383505 rpsL Pden_0753 - 30S ribosomal protein S12 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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