version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 613 68.98 0 593973..595313 + 446 119383370 - Pden_0618 - nucleotidyl transferase 614 68.87 0 595315..597132 + 605 119383371 - Pden_0619 - D-fructose-6-phosphate amidotransferase 615 73.78 +1 597136..598119 - 327 119383372 - Pden_0620 - peptidase S58, DmpA 616 62.74 0 598259..598843 + 194 119383373 - Pden_0621 - peptide methionine sulfoxide reductase 617 69.31 0 598844..599713 + 289 119383374 - Pden_0622 - ribosomal L11 methyltransferase 618 63.08 0 599834..600028 - 64 119383375 - Pden_0623 - hypothetical protein 619 68.75 0 600267..600986 - 239 119383376 - Pden_0624 - hypothetical protein 620 70.99 +1 601003..601974 + 323 119383377 ubiA Pden_0625 - prenyltransferase 621 72.56 +1 602001..604307 + 768 119383378 - Pden_0626 - OmpA/MotB domain-containing protein 622 64.53 0 604338..604664 + 108 119383379 - Pden_0627 - hypothetical protein 623 64.58 0 604661..605521 - 286 119383380 - Pden_0628 - hypothetical protein 624 61.97 -1 605518..605964 - 148 119383381 - Pden_0629 - hypothetical protein 625 66.58 0 606107..607291 - 394 119383382 - Pden_0630 - aromatic amino acid aminotransferase 626 67.94 0 607291..608151 - 286 119383383 - Pden_0631 - 3-mercaptopyruvate sulfurtransferase 627 62.00 -1 608217..608687 - 156 119383384 smpB Pden_0632 - SsrA-binding protein 628 71.84 +1 608839..610500 + 553 119383385 - Pden_0633 - acetolactate synthase 2 catalytic subunit 629 72.14 +1 610511..611935 - 474 119383386 - Pden_0634 - phosphate transporter 630 70.91 +1 611932..612402 - 156 119383387 - Pden_0635 - NUDIX hydrolase 631 71.99 +1 612399..612830 - 143 119383388 - Pden_0636 - hypothetical protein 632 74.81 +1 612897..614948 - 683 119383389 - Pden_0637 - penicillin-binding protein 1C 633 72.25 +1 615033..616142 - 369 119383390 - Pden_0638 - hypothetical protein 634 71.35 +1 616152..617519 - 455 119383391 - Pden_0639 - protein of unknown function DUF463, YcjX family protein 635 73.93 +1 617618..620026 + 802 119383392 - Pden_0640 - ATP-dependent helicase HrpB 636 66.67 0 620066..620614 - 182 119383393 - Pden_0641 - hypothetical protein 637 72.82 +1 620768..621661 - 297 119383394 - Pden_0642 - methionyl-tRNA formyltransferase 638 72.58 +1 621688..622566 - 292 119383395 - Pden_0643 - dienelactone hydrolase 639 69.11 0 622551..624188 - 545 119383396 - Pden_0644 - hypothetical protein 640 68.66 0 624493..624993 - 166 119383397 - Pden_0645 - peptide deformylase 641 70.79 +1 625277..625834 - 185 119383398 - Pden_0646 - peptide deformylase 642 65.33 0 625827..626348 - 173 119383399 - Pden_0647 - peptide deformylase 643 68.95 0 626439..627623 + 394 119383400 - Pden_0648 - aminotransferase, class I and II 644 70.79 +1 627620..628249 + 209 119383401 - Pden_0649 - ErfK/YbiS/YcfS/YnhG family protein 645 69.57 0 628306..629682 + 458 119383402 - Pden_0650 - MATE efflux family protein 646 58.23 -1 629713..629949 + 78 119383403 - Pden_0651 - AsnC family transcriptional regulator 647 70.77 0 629991..631136 + 381 119383404 - Pden_0652 - histidinol-phosphate aminotransferase 648 66.05 0 631186..631668 - 160 119383405 - Pden_0653 - AsnC family transcriptional regulator 649 64.57 0 631740..632120 + 126 119383406 - Pden_0654 - hypothetical protein 650 66.73 0 632113..633768 + 551 119383407 - Pden_0655 - nitrite/sulfite reductase hemoprotein beta subunit 651 67.49 0 633761..634492 + 243 119383408 - Pden_0656 - phosphoadenosine phosphosulfate reductase 652 68.82 0 634489..634860 + 123 119383409 - Pden_0657 - hypothetical protein 653 64.28 0 634914..635750 + 278 119383410 - Pden_0658 - ferredoxin--NADP(+) reductase 654 66.51 0 635875..638430 + 851 119383411 - Pden_0659 - DNA topoisomerase I 655 67.01 0 638639..640381 + 580 119383412 - Pden_0660 - gamma-glutamyltransferase 656 67.82 0 640375..640722 - 115 119383413 - Pden_0661 - hypothetical protein 657 64.35 0 641089..642597 - 502 119383414 - Pden_0662 - amino acid carrier protein 658 66.86 0 642700..644766 - 688 119383415 - Pden_0663 - TRAP transporter, 4TM/12TM fusion protein 659 67.27 0 644849..645850 - 333 119383416 - Pden_0664 - TRAP transporter solute receptor TAXI family protein 660 67.61 0 646155..647639 + 494 119383417 - Pden_0665 - phosphate transporter 661 64.41 0 647851..649314 + 487 119383418 - Pden_0666 - amino acid carrier protein 662 70.67 0 649453..650526 - 357 119383419 - Pden_0667 - hypothetical protein 663 67.68 0 650523..651113 - 196 119383420 - Pden_0668 - TetR family transcriptional regulator 664 69.30 0 651205..652191 + 328 119383421 - Pden_0669 - 3-oxoacyl-(acyl-carrier-protein) synthase 665 72.24 +1 652191..653123 + 310 119383422 - Pden_0670 - NAD-dependent epimerase/dehydratase 666 72.03 +1 653111..653893 + 260 119383423 - Pden_0671 - beta-lactamase domain-containing protein 667 68.70 0 653890..655170 + 426 119383424 - Pden_0672 - putative adenylate-forming enzyme 668 69.30 0 655286..656311 - 341 119383425 - Pden_0673 - regulatory protein, LacI 669 65.99 0 656409..657740 + 443 119383426 - Pden_0674 - xanthine/uracil/vitamin C permease 670 70.03 0 657740..659137 + 465 119383427 - Pden_0675 - amidohydrolase 671 68.78 0 659134..659844 + 236 119383428 - Pden_0676 - hypothetical protein 672 72.05 +1 659972..660733 - 253 119383429 - Pden_0677 - putative hydantoin racemase protein 673 60.61 -1 660737..662089 - 450 119383430 - Pden_0678 - permease for cytosine/purines, uracil, thiamine, allantoin 674 68.21 0 662118..662828 - 236 119383431 - Pden_0679 - Asp/Glu racemase 675 65.64 0 662953..663633 + 226 119383432 - Pden_0680 - GntR family transcriptional regulator 676 70.77 0 663687..664271 + 194 119383433 - Pden_0681 - hypothetical protein 677 67.65 0 664351..664755 + 134 119383434 - Pden_0682 - 4-hydroxybenzoyl-CoA thioesterase 678 66.09 0 664857..665552 + 231 119383435 - Pden_0683 - MotA/TolQ/ExbB proton channel 679 69.68 0 665554..666018 + 154 119383436 - Pden_0684 - biopolymer transport protein ExbD/TolR 680 74.11 +1 666022..667566 + 514 119383437 - Pden_0685 - TolA family protein 681 66.02 0 667568..668953 + 461 119383438 tolB Pden_0686 - translocation protein TolB 682 67.05 0 668964..669485 + 173 119383439 - Pden_0687 - OmpA domain-containing protein 683 70.75 0 669482..670411 + 309 119383440 - Pden_0688 - hypothetical protein 684 73.90 +1 670401..671630 + 409 119383441 - Pden_0689 - tRNA(Ile)-lysidine synthetase 685 64.98 0 671691..673586 + 631 119383442 - Pden_0690 - ATP-dependent metalloprotease FtsH 686 66.98 0 673915..674232 + 105 119383443 - Pden_0691 - chorismate mutase 687 67.88 0 674269..674679 - 136 119383444 - Pden_0692 - hypothetical protein 688 69.98 0 674672..675697 - 341 119383445 ruvB Pden_0693 - Holliday junction DNA helicase B 689 69.85 0 675694..676572 - 292 119383446 - Pden_0694 - peptidase M48, Ste24p 690 71.43 +1 676578..677249 - 223 119383447 ruvA Pden_0695 - Holliday junction DNA helicase motor protein 691 69.09 0 677260..677754 - 164 119383448 - Pden_0696 - crossover junction endodeoxyribonuclease RuvC 692 66.63 0 677879..680719 + 946 119383449 - Pden_0697 - putative monovalent cation/H+ antiporter subunit A 693 66.38 0 680719..681072 + 117 119383450 - Pden_0698 - putative monovalent cation/H+ antiporter subunit C 694 67.61 0 681069..682661 + 530 119383451 - Pden_0699 - putative monovalent cation/H+ antiporter subunit D 695 68.29 0 682658..683149 + 163 119383452 - Pden_0700 - putative monovalent cation/H+ antiporter subunit E 696 58.52 -1 683146..683415 + 89 119383453 - Pden_0701 - multiple resistance and pH regulation protein F 697 67.19 0 683425..683808 + 127 119383454 - Pden_0702 - monovalent cation/proton antiporter, MnhG/PhaG subunit 698 71.06 +1 683815..684087 + 90 119383455 - Pden_0703 - hypothetical protein 699 67.92 0 684138..685013 - 291 119383456 - Pden_0704 - dihydrodipicolinate synthase 700 73.31 +1 685120..687270 + 716 119383457 - Pden_0705 - lytic transglycosylase, catalytic 701 67.40 0 687224..688183 - 319 119383458 - Pden_0706 - hypothetical protein 702 68.31 0 688246..689034 - 262 119383459 - Pden_0707 - inositol monophosphatase 703 67.38 0 689103..689804 - 233 119383460 - Pden_0708 - UbiC transcription regulator-associated domain-containing protein 704 70.04 0 689801..691162 - 453 119383461 - Pden_0709 - N-formimino-L-glutamate deiminase 705 67.91 0 691259..692461 + 400 119383462 - Pden_0710 - imidazolonepropionase 706 70.04 0 692454..693995 + 513 119383463 - Pden_0711 - histidine ammonia-lyase 707 67.05 0 693992..694783 + 263 119383464 - Pden_0712 - N-formylglutamate amidohydrolase 708 69.54 0 694780..695928 + 382 119383465 - Pden_0713 - L-carnitine dehydratase/bile acid-inducible protein F 709 68.66 0 695925..697079 + 384 119383466 - Pden_0714 - butyryl-CoA dehydrogenase 710 66.31 0 697092..698756 + 554 119383467 - Pden_0715 - urocanate hydratase 711 63.98 0 698821..699639 + 272 119383468 - Pden_0716 - extracellular solute-binding protein 712 67.28 0 699697..700344 + 215 119383469 - Pden_0717 - polar amino acid ABC transporter, inner membrane subunit 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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