version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 523 65.96 0 499640..500626 - 328 119383280 - Pden_0528 - basic membrane lipoprotein 524 70.15 0 500718..501119 - 133 119383281 - Pden_0529 - ribosomal-protein-alanine acetyltransferase 525 73.74 +1 501116..501709 - 197 119383282 - Pden_0530 - peptidase M22, glycoprotease 526 67.57 0 501702..502256 - 184 119383283 - Pden_0531 - NifU domain-containing protein 527 68.86 0 502470..502925 - 151 119383284 - Pden_0532 - UspA domain-containing protein 528 64.40 0 503082..503831 + 249 119383285 - Pden_0533 - sugar transferase 529 72.52 +1 504029..504814 - 261 119383286 truA Pden_0534 - tRNA pseudouridine synthase A 530 70.26 0 504818..505792 - 324 119383287 - Pden_0535 - hypothetical protein 531 64.80 0 506263..507711 + 482 119383288 - Pden_0536 - cation transporter 532 72.80 +1 507708..508946 - 412 119383289 - Pden_0537 - peptidoglycan binding domain-containing protein 533 66.25 0 509237..510187 + 316 119383290 glyQ Pden_0538 - glycyl-tRNA synthetase subunit alpha 534 67.29 0 510184..510666 + 160 119383291 - Pden_0539 - signal transduction histidine kinase regulating citrate/malate metabolism 535 69.34 0 510666..512723 + 685 119383292 - Pden_0540 - glycine--tRNA ligase 536 70.22 0 512830..515391 + 853 119383293 - Pden_0541 - pyruvate phosphate dikinase 537 64.81 0 515619..516158 + 179 119383294 - Pden_0542 - cell wall hydrolase, SleB 538 71.18 +1 516201..517019 + 272 119383295 - Pden_0543 - dihydroneopterin aldolase 539 69.14 0 517064..518035 + 323 119383296 - Pden_0544 - dihydropteroate synthase 540 68.60 0 518046..519389 + 447 119383297 - Pden_0545 - phosphoglucosamine mutase 541 72.10 +1 519472..520593 - 373 119383298 - Pden_0546 - monooxygenase, FAD-binding 542 63.59 0 520635..521057 - 140 119383299 - Pden_0547 - TraR/DksA family transcriptional regulator 543 62.62 0 521219..522058 + 279 119383300 - Pden_0548 - ATPase 544 66.21 0 522070..522510 + 146 119383301 - Pden_0549 - GCN5-related N-acetyltransferase 545 65.86 0 522559..523053 - 164 119383302 - Pden_0550 - lytic transglycosylase, catalytic 546 65.88 0 523200..524594 - 464 119383303 - Pden_0551 - dihydrolipoamide dehydrogenase 547 66.16 0 524645..525037 - 130 119383304 - Pden_0552 - inner membrane protein 548 65.89 0 525037..525294 - 85 119383305 - Pden_0553 - hypothetical protein 549 67.78 0 525437..526969 - 510 119383306 - Pden_0554 - dihydrolipoamide acetyltransferase 550 65.32 0 526971..529937 - 988 119383307 kgd Pden_0555 - alpha-ketoglutarate decarboxylase 551 68.67 0 529934..530182 - 82 119383308 - Pden_0556 - hypothetical protein 552 75.07 +2 530201..530545 + 114 119383309 - Pden_0557 - hypothetical protein 553 66.33 0 530589..531473 - 294 119383310 - Pden_0558 - succinyl-CoA synthetase, alpha subunit 554 63.40 0 531478..532671 - 397 119383311 sucC Pden_0559 - succinyl-CoA synthetase subunit beta 555 65.00 0 532894..536133 + 1079 119383312 - Pden_0560 - hemolysin-type calcium-binding region 556 66.25 0 536193..537155 - 320 119383313 - Pden_0561 - malate dehydrogenase 557 67.35 0 537341..538075 + 244 119383314 - Pden_0562 - hypothetical protein 558 69.29 0 538156..538995 + 279 119383315 - Pden_0563 - Citryl-CoA lyase 559 68.48 0 539041..539592 + 183 119383316 - Pden_0564 - NnrU family protein 560 65.22 0 539594..539800 + 68 119383317 - Pden_0565 - hypothetical protein 561 67.34 0 539810..540844 + 344 119383318 - Pden_0566 - dehydratase 562 65.39 0 541157..541549 + 130 119383319 - Pden_0567 - succinate dehydrogenase, cytochrome b subunit 563 64.62 0 541566..541955 + 129 119383320 - Pden_0568 - putative succinate dehydrogenase, hydrophobic membrane anchor protein 564 65.67 0 541965..543767 + 600 119383321 sdhA Pden_0569 - succinate dehydrogenase flavoprotein subunit 565 73.11 +1 543767..544123 + 118 119383322 - Pden_0570 - hypothetical protein 566 71.25 +1 544123..544449 + 108 119383323 - Pden_0571 - hypothetical protein 567 60.77 -1 544520..545299 + 259 119383324 sdhB Pden_0572 - succinate dehydrogenase iron-sulfur subunit 568 66.31 0 545816..546649 + 277 119383325 - Pden_0573 - hypothetical protein 569 63.49 0 546646..547338 - 230 119383326 - Pden_0574 - beta-lactamase domain-containing protein 570 64.24 0 547470..547757 + 95 119383327 - Pden_0575 - glutamyl-tRNA(Gln) amidotransferase, C subunit 571 67.07 0 547754..549235 + 493 119383328 gatA Pden_0576 - aspartyl/glutamyl-tRNA amidotransferase subunit A 572 70.86 +1 549259..549783 + 174 119383329 - Pden_0577 - hypothetical protein 573 70.97 +1 549780..550406 + 208 119383330 - Pden_0578 - N-acetylmuramoyl-L-alanine amidase 574 66.67 0 550394..551167 - 257 119383331 - Pden_0579 - hypothetical protein 575 59.67 -1 551716..552015 - 99 119383332 - Pden_0580 - hypothetical protein 576 70.65 0 552277..553380 + 367 119383333 - Pden_0581 - putative Mrp (multidrug resistance-associated proteins) family protein 577 67.06 0 554021..554530 + 169 119383334 - Pden_0582 - cell division protein MraZ 578 72.24 +1 554532..555500 + 322 119383335 - Pden_0583 - S-adenosyl-methyltransferase MraW 579 66.67 0 555500..555883 + 127 119383336 - Pden_0584 - hypothetical protein 580 67.61 0 555880..557685 + 601 119383337 - Pden_0585 - peptidoglycan glycosyltransferase 581 69.52 0 557715..559184 + 489 119383338 murE Pden_0586 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 582 70.92 +1 559181..560566 + 461 119383339 - Pden_0587 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase 583 65.19 0 560566..561648 + 360 119383340 - Pden_0588 - phospho-N-acetylmuramoyl-pentapeptide-transferase 584 69.66 0 561731..563131 + 466 119383341 - Pden_0589 - UDP-N-acetylmuramoylalanine--D-glutamate ligase 585 62.52 0 563332..564489 - 385 119383342 - Pden_0590 - membrane protein involved in aromatic hydrocarbon degradation 586 72.94 +1 564656..565627 + 323 119383343 - Pden_0591 - putative tellurite resistance protein 587 67.29 0 565697..567145 + 482 119383344 - Pden_0592 - inosine-5'-monophosphate dehydrogenase 588 68.41 0 567470..568273 + 267 119383345 - Pden_0593 - hypothetical protein 589 71.70 +1 568349..569500 + 383 119383346 - Pden_0594 - Fmu (Sun) domain-containing protein 590 66.96 0 569558..571600 + 680 119383347 - Pden_0595 - multi-sensor hybrid histidine kinase 591 62.39 0 571624..572208 - 194 119383348 - Pden_0596 - hypothetical protein 592 61.72 -1 572452..573522 + 356 119383349 recA Pden_0597 - recombinase A 593 65.84 0 573749..576406 + 885 119383350 alaS Pden_0598 - alanyl-tRNA synthetase 594 66.67 0 576403..576693 + 96 119383351 - Pden_0599 - hypothetical protein 595 66.16 0 576760..577554 + 264 119383352 - Pden_0600 - putative glutamine amidotransferase 596 60.98 -1 577694..577939 - 81 119383353 - Pden_0601 - hypothetical protein 597 65.32 0 577960..578181 - 73 119383354 - Pden_0602 - hypothetical protein 598 66.13 0 578569..579861 + 430 119383355 - Pden_0603 - adenylosuccinate synthetase 599 63.38 0 579873..580085 + 70 119383356 - Pden_0604 - hypothetical protein 600 71.23 +1 580103..580738 + 211 119383357 - Pden_0605 - thiamine pyrophosphokinase 601 69.14 0 580824..581795 - 323 119383358 - Pden_0606 - binding-protein-dependent transport systems inner membrane component 602 63.00 0 581788..582795 - 335 119383359 - Pden_0607 - binding-protein-dependent transport systems inner membrane component 603 66.31 0 582803..584503 - 566 119383360 - Pden_0608 - extracellular solute-binding protein 604 68.63 0 584724..586553 + 609 119383361 - Pden_0609 - ABC transporter related 605 66.15 0 586652..587821 + 389 119383362 - Pden_0610 - amidohydrolase 606 65.52 0 587908..589299 - 463 119383363 - Pden_0611 - dihydrolipoamide dehydrogenase 607 69.93 0 589345..589926 - 193 119383364 - Pden_0612 - hypothetical protein 608 66.11 0 589984..591234 - 416 119383365 - Pden_0613 - major facilitator transporter 609 69.35 0 591234..592313 - 359 119383366 - Pden_0614 - queuosine biosynthesis protein 610 59.45 -1 592411..592701 + 96 119383367 - Pden_0615 - putative bacterioferritin-associated ferredoxin 611 59.05 -1 592649..593134 + 161 119383368 - Pden_0616 - bacterioferritin 612 72.74 +1 593194..593868 - 224 119383369 - Pden_0617 - HAD family hydrolase 613 68.98 0 593973..595313 + 446 119383370 - Pden_0618 - nucleotidyl transferase 614 68.87 0 595315..597132 + 605 119383371 - Pden_0619 - D-fructose-6-phosphate amidotransferase 615 73.78 +1 597136..598119 - 327 119383372 - Pden_0620 - peptidase S58, DmpA 616 62.74 0 598259..598843 + 194 119383373 - Pden_0621 - peptide methionine sulfoxide reductase 617 69.31 0 598844..599713 + 289 119383374 - Pden_0622 - ribosomal L11 methyltransferase 618 63.08 0 599834..600028 - 64 119383375 - Pden_0623 - hypothetical protein 619 68.75 0 600267..600986 - 239 119383376 - Pden_0624 - hypothetical protein 620 70.99 +1 601003..601974 + 323 119383377 ubiA Pden_0625 - prenyltransferase 621 72.56 +1 602001..604307 + 768 119383378 - Pden_0626 - OmpA/MotB domain-containing protein 622 64.53 0 604338..604664 + 108 119383379 - Pden_0627 - hypothetical protein 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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