version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 443 58.19 -1 415141..416178 + 345 119383200 - Pden_0446 - zinc finger, CHC2-family protein 444 57.64 -2 416175..419363 + 1062 119383201 - Pden_0447 - hypothetical protein 445 57.10 -2 419360..420268 + 302 119383202 - Pden_0448 - hypothetical protein 446 56.80 -2 420268..421179 + 303 119383203 - Pden_0449 - exonuclease, RNase T and DNA polymerase III 447 59.83 -1 421270..421986 - 238 119383204 - Pden_0450 - hypothetical protein 448 61.23 -1 421964..422515 - 183 119383205 - Pden_0451 - hypothetical protein 449 53.49 -2 423504..423761 - 85 119383206 - Pden_0453 - hypothetical protein 450 59.69 -1 423758..424588 - 276 119383207 - Pden_0454 - hypothetical protein 451 60.39 -1 424675..424929 + 84 119383208 - Pden_0455 - helix-turn-helix domain-containing protein 452 54.84 -2 425445..425816 - 123 119383209 - Pden_0456 - hypothetical protein 453 65.72 0 425929..426456 + 175 119383210 - Pden_0457 - hypothetical protein 454 63.15 0 426466..428598 + 710 119383211 - Pden_0458 - integrase catalytic subunit 455 63.46 0 428588..429586 + 332 119383212 - Pden_0459 - transposition protein, putative 456 62.96 0 429588..431069 + 493 119383213 - Pden_0460 - hypothetical protein 457 66.53 0 431234..432751 + 505 119383214 - Pden_0461 - integrase catalytic subunit 458 66.84 0 432748..433326 + 192 119383215 - Pden_0462 - IstB ATP binding domain-containing protein 459 64.13 0 433296..434282 + 328 119383216 - Pden_0463 - recombinase 460 64.16 0 434326..435324 + 332 119383217 - Pden_0464 - transposase IS116/IS110/IS902 family protein 461 53.04 -2 436286..437371 + 361 119383218 - Pden_0466 - ABC transporter related 462 51.36 -2 437384..438448 + 354 119383219 - Pden_0467 - putative spermidine/putrescine-binding protein 463 55.88 -2 438445..439695 + 416 119383220 - Pden_0468 - binding-protein-dependent transport systems inner membrane component 464 56.36 -2 439692..440477 + 261 119383221 - Pden_0469 - binding-protein-dependent transport systems inner membrane component 465 63.50 0 440577..441365 + 262 119383222 - Pden_0470 - GntR family transcriptional regulator 466 63.44 0 441610..442539 + 309 119383223 - Pden_0471 - hypothetical protein 467 65.65 0 442556..444619 + 687 119383224 - Pden_0472 - 5-oxoprolinase (ATP-hydrolyzing) 468 65.82 0 444631..446397 + 588 119383225 - Pden_0473 - hydantoinase B/oxoprolinase 469 63.14 0 446394..447158 + 254 119383226 fabG Pden_0474 - 3-ketoacyl-(acyl-carrier-protein) reductase 470 65.65 0 447146..447538 + 130 119383227 - Pden_0475 - hypothetical protein 471 66.45 0 447538..447990 + 150 119383228 - Pden_0476 - thioesterase superfamily protein 472 60.49 -1 448044..448658 + 204 119383229 - Pden_0477 - XRE family transcriptional regulator 473 63.58 0 448844..450010 + 388 119383230 - Pden_0478 - protein of unknown function DUF1100, hydrolase family protein 474 66.02 0 450007..450780 + 257 119383231 - Pden_0479 - short-chain dehydrogenase/reductase SDR 475 65.62 0 450916..452154 + 412 119383232 - Pden_0480 - major facilitator transporter 476 63.67 0 452349..452849 - 166 119383233 - Pden_0481 - hypothetical protein 477 60.23 -1 453006..453269 + 87 119383234 - Pden_0482 - SpoVT/AbrB domain-containing protein 478 59.95 -1 453266..453667 + 133 119383235 - Pden_0483 - PilT domain-containing protein 479 58.70 -1 454495..454833 + 112 119383236 - Pden_0484 - RelE-like cytotoxic translational repressor of toxin-antitoxin stability system 480 61.22 -1 454815..455108 + 97 119383237 - Pden_0485 - XRE family transcriptional regulator 481 57.81 -2 455218..455601 + 127 119383238 - Pden_0486 - hypothetical protein 482 58.26 -1 455768..456088 - 106 119383239 - Pden_0487 - hypothetical protein 483 66.18 0 456189..460739 - 1516 119383240 - Pden_0488 - glutamate synthase (ferredoxin) 484 66.41 0 460736..461500 - 254 119383241 - Pden_0489 - hypothetical protein 485 67.20 0 461513..463006 - 497 119383242 - Pden_0490 - putative oxidoreductase 486 64.05 0 463157..463960 - 267 119383243 - Pden_0491 - undecaprenyl pyrophosphate phosphatase 487 69.79 0 463960..464952 - 330 119383244 - Pden_0492 - NAD-dependent epimerase/dehydratase 488 69.11 0 464983..466581 - 532 119383245 - Pden_0493 - glucose-methanol-choline oxidoreductase 489 71.66 +1 467184..467624 + 146 119383246 - Pden_0494 - NUDIX hydrolase 490 67.53 0 467633..468904 - 423 119383247 - Pden_0495 - response regulator receiver protein 491 65.81 0 469024..469374 + 116 119383248 - Pden_0496 - Hpt protein 492 67.23 0 469382..470620 - 412 119383249 - Pden_0497 - threonine dehydratase 493 65.95 0 470699..471541 - 280 119383250 - Pden_0498 - hypothetical protein 494 63.81 0 471591..472817 + 408 119383251 - Pden_0499 - argininosuccinate synthase 495 64.79 0 472955..473434 + 159 119383252 - Pden_0500 - 3-demethylubiquinone-9 3-methyltransferase 496 68.84 0 473477..474028 + 183 119383253 - Pden_0501 - molybdenum cofactor synthesis domain-containing protein 497 69.76 0 474003..474617 - 204 119383254 - Pden_0502 - hypothetical protein 498 66.29 0 474658..475452 - 264 119383255 - Pden_0503 - ABC transporter related 499 64.80 0 475449..476522 - 357 119383256 - Pden_0504 - inner-membrane translocator 500 67.55 0 476615..477634 - 339 119383257 - Pden_0505 - periplasmic binding protein/LacI transcriptional regulator 501 72.54 +1 477754..478944 + 396 119383258 - Pden_0506 - ROK family protein 502 67.43 0 478963..479877 + 304 119383259 - Pden_0507 - chaperone DnaJ domain-containing protein 503 67.24 0 479874..480221 + 115 119383260 - Pden_0508 - hypothetical protein 504 67.86 0 480218..480385 - 55 119383261 - Pden_0509 - hypothetical protein 505 70.86 +1 480382..480858 - 158 119383262 - Pden_0510 - Holliday junction resolvase YqgF 506 72.92 +1 480855..482102 - 415 119383263 - Pden_0511 - putative cytochrome c-type biogenesis protein, CycH 507 65.25 0 482305..483576 + 423 119383264 - Pden_0512 - sarcosine oxidase beta subunit family protein 508 68.25 0 483734..483985 + 83 119383265 - Pden_0513 - hypothetical protein 509 67.19 0 484296..484676 + 126 119383266 - Pden_0514 - sarcosine oxidase, delta subunit, heterotetrameric 510 68.30 0 484673..487606 + 977 119383267 - Pden_0515 - sarcosine oxidase alpha subunit family protein 511 72.25 +1 487599..488117 + 172 119383268 - Pden_0516 - sarcosine oxidase, gamma subunit 512 70.18 0 488190..488645 + 151 119383269 - Pden_0517 - hypothetical protein 513 61.00 -1 488754..489353 + 199 119383270 - Pden_0518 - superoxide dismutase 514 68.00 0 489405..489929 + 174 119383271 - Pden_0519 - hypothetical protein 515 69.48 0 489926..490564 - 212 119383272 - Pden_0520 - GDSL family lipase 516 71.00 +1 490561..492984 - 807 119383273 - Pden_0521 - heavy metal translocating P-type ATPase 517 67.88 0 493412..493990 + 192 119383274 - Pden_0522 - ErfK/YbiS/YcfS/YnhG family protein 518 71.49 +1 493991..495088 + 365 119383275 - Pden_0523 - tRNA 2-selenouridine synthase 519 69.90 0 495107..495910 - 267 119383276 - Pden_0524 - purine nucleoside phosphorylase 520 67.81 0 495894..496859 - 321 119383277 - Pden_0525 - inner-membrane translocator 521 67.35 0 496859..498037 - 392 119383278 - Pden_0526 - inner-membrane translocator 522 69.19 0 498015..499640 - 541 119383279 - Pden_0527 - ABC transporter related 523 65.96 0 499640..500626 - 328 119383280 - Pden_0528 - basic membrane lipoprotein 524 70.15 0 500718..501119 - 133 119383281 - Pden_0529 - ribosomal-protein-alanine acetyltransferase 525 73.74 +1 501116..501709 - 197 119383282 - Pden_0530 - peptidase M22, glycoprotease 526 67.57 0 501702..502256 - 184 119383283 - Pden_0531 - NifU domain-containing protein 527 68.86 0 502470..502925 - 151 119383284 - Pden_0532 - UspA domain-containing protein 528 64.40 0 503082..503831 + 249 119383285 - Pden_0533 - sugar transferase 529 72.52 +1 504029..504814 - 261 119383286 truA Pden_0534 - tRNA pseudouridine synthase A 530 70.26 0 504818..505792 - 324 119383287 - Pden_0535 - hypothetical protein 531 64.80 0 506263..507711 + 482 119383288 - Pden_0536 - cation transporter 532 72.80 +1 507708..508946 - 412 119383289 - Pden_0537 - peptidoglycan binding domain-containing protein 533 66.25 0 509237..510187 + 316 119383290 glyQ Pden_0538 - glycyl-tRNA synthetase subunit alpha 534 67.29 0 510184..510666 + 160 119383291 - Pden_0539 - signal transduction histidine kinase regulating citrate/malate metabolism 535 69.34 0 510666..512723 + 685 119383292 - Pden_0540 - glycine--tRNA ligase 536 70.22 0 512830..515391 + 853 119383293 - Pden_0541 - pyruvate phosphate dikinase 537 64.81 0 515619..516158 + 179 119383294 - Pden_0542 - cell wall hydrolase, SleB 538 71.18 +1 516201..517019 + 272 119383295 - Pden_0543 - dihydroneopterin aldolase 539 69.14 0 517064..518035 + 323 119383296 - Pden_0544 - dihydropteroate synthase 540 68.60 0 518046..519389 + 447 119383297 - Pden_0545 - phosphoglucosamine mutase 541 72.10 +1 519472..520593 - 373 119383298 - Pden_0546 - monooxygenase, FAD-binding 542 63.59 0 520635..521057 - 140 119383299 - Pden_0547 - TraR/DksA family transcriptional regulator 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0