version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 240 68.15 0 224461..225939 + 492 119382997 - Pden_0243 - succinate-semialdehyde dehydrogenase (NAD(P)(+)) 241 68.49 0 225977..227128 + 383 119382998 - Pden_0244 - mandelate racemase/muconate lactonizing protein 242 68.18 0 227187..228044 + 285 119382999 - Pden_0245 - 5-carboxymethyl-2-hydroxymuconate delta-isomerase 243 62.40 0 228259..229149 + 296 119383000 - Pden_0246 - xylose isomerase domain-containing protein 244 65.04 0 229193..230239 + 348 119383001 - Pden_0247 - periplasmic binding protein/LacI transcriptional regulator 245 66.11 0 230457..231896 + 479 119383002 - Pden_0248 - ABC transporter related 246 65.52 0 231893..232855 + 320 119383003 - Pden_0249 - inner-membrane translocator 247 64.93 0 232852..233715 + 287 119383004 - Pden_0250 - DNA-binding transcriptional repressor RpiR 248 68.80 0 233732..234574 + 280 119383005 - Pden_0251 - ribokinase-like domain-containing protein 249 53.57 -2 234598..234849 - 83 119383006 - Pden_0252 - transposase (class I) 250 63.05 0 234955..235479 - 174 119383007 - Pden_0253 - hypothetical protein 251 54.84 -2 235511..235789 + 92 119383008 - Pden_0254 - hypothetical protein 252 56.63 -2 236307..236864 + 185 119383009 - Pden_0255 - hypothetical protein 253 65.49 0 236988..237242 + 84 119383010 - Pden_0256 - hypothetical protein 254 65.24 0 237429..237779 - 116 119383011 - Pden_0257 - hypothetical protein 255 61.82 -1 237776..238126 - 116 119383012 - Pden_0258 - hypothetical protein 256 65.76 0 238183..238512 + 109 119383013 - Pden_0259 - hypothetical protein 257 62.32 -1 238789..239064 - 91 119383014 - Pden_0260 - hypothetical protein 258 61.26 -1 239190..239984 - 264 119383015 - Pden_0261 - D12 class N6 adenine-specific DNA methyltransferase 259 53.09 -2 239981..240562 - 193 119383016 - Pden_0262 - hypothetical protein 260 65.59 0 240559..242226 - 555 119383017 - Pden_0263 - DNA-cytosine methyltransferase 261 58.59 -1 242420..242716 + 98 119383018 - Pden_0264 - hypothetical protein 262 64.81 0 242716..243093 + 125 119383019 - Pden_0265 - XRE family transcriptional regulator 263 68.03 0 243083..243817 + 244 119383020 - Pden_0266 - hypothetical protein 264 68.97 0 243957..244910 - 317 119383021 - Pden_0267 - peptidoglycan binding domain-containing protein 265 60.85 -1 244980..245237 - 85 119383022 - Pden_0268 - hypothetical protein 266 66.10 0 245264..245617 - 117 119383023 - Pden_0269 - hypothetical protein 267 64.50 0 245625..249644 - 1339 119383024 - Pden_0270 - gene transfer agent (GTA) like protein 268 67.58 0 249649..250086 - 145 119383025 - Pden_0271 - NlpC/P60 family phage cell wall peptidase 269 64.41 0 250083..250967 - 294 119383026 - Pden_0272 - phage protein 270 63.32 0 250964..251590 - 208 119383027 - Pden_0273 - hypothetical protein 271 62.62 0 251590..252849 - 419 119383028 - Pden_0274 - hypothetical protein 272 64.79 0 252834..253898 - 354 119383029 - Pden_0275 - hypothetical protein 273 67.05 0 254344..254865 + 173 119383030 - Pden_0276 - putative sugar-binding protein 274 69.37 0 254938..255678 - 246 119383031 - Pden_0277 - ChaC family protein 275 64.86 0 256203..257528 + 441 119383032 - Pden_0278 - major facilitator transporter 276 69.62 0 257705..259090 + 461 119383033 - Pden_0279 - GntR family transcriptional regulator 277 63.99 0 259188..259973 + 261 119383034 - Pden_0280 - ABC transporter related 278 66.78 0 259973..260818 + 281 119383035 - Pden_0281 - extracellular solute-binding protein 279 66.36 0 260877..261533 + 218 119383036 - Pden_0282 - amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine 280 64.70 0 261535..262194 + 219 119383037 - Pden_0283 - amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine 281 70.97 +1 262191..262934 + 247 119383038 - Pden_0284 - Asp/Glu racemase 282 72.83 +1 262931..263887 + 318 119383039 - Pden_0285 - threonine dehydratase 283 70.86 +1 263884..264861 + 325 119383040 - Pden_0286 - ornithine cyclodeaminase 284 64.64 0 264873..266054 + 393 119383041 - Pden_0287 - peptidase M24 285 68.46 0 266068..267069 + 333 119383042 - Pden_0288 - succinylglutamate desuccinylase/aspartoacylase 286 68.73 0 267066..268517 + 483 119383043 - Pden_0289 - succinate-semialdehyde dehydrogenase (NAD(P)(+)) 287 66.16 0 268517..269887 + 456 119383044 - Pden_0290 - hypothetical protein 288 68.85 0 269891..271033 + 380 119383045 - Pden_0291 - alcohol dehydrogenase 289 70.26 0 271049..272245 - 398 119383046 - Pden_0292 - hypothetical protein 290 69.39 0 272403..272990 - 195 119383047 - Pden_0293 - hypothetical protein 291 68.19 0 273336..275105 - 589 119383048 - Pden_0294 - hemolysin-type calcium-binding region 292 67.51 0 275682..276158 + 158 119383049 - Pden_0295 - MarR family transcriptional regulator 293 67.79 0 276190..278148 - 652 119383050 - Pden_0296 - TonB-dependent receptor 294 68.51 0 278251..279009 - 252 119383051 - Pden_0297 - ABC transporter related 295 67.60 0 279006..279965 - 319 119383052 - Pden_0298 - transport system permease protein 296 70.74 0 279955..280911 - 318 119383053 - Pden_0299 - transport system permease protein 297 67.00 0 280913..281818 - 301 119383054 - Pden_0300 - periplasmic binding protein 298 71.59 +1 282034..283434 + 466 119383055 - Pden_0301 - L-seryl-tRNA(Sec) selenium transferase 299 66.67 0 283449..284342 - 297 119383056 - Pden_0302 - LysR family transcriptional regulator 300 63.27 0 284436..284876 + 146 119383057 - Pden_0303 - transmembrane pair domain-containing protein 301 68.81 0 284873..285757 - 294 119383058 - Pden_0304 - LysR family transcriptional regulator 302 66.32 0 285838..286125 + 95 119383059 - Pden_0305 - hypothetical protein 303 68.45 0 286535..288052 - 505 119383060 - Pden_0306 - hypothetical protein 304 69.09 0 288056..288550 - 164 119383061 - Pden_0307 - putative tricarboxylic transport membrane protein 305 67.83 0 288547..289488 - 313 119383062 - Pden_0308 - hypothetical protein 306 70.49 0 289661..290758 - 365 119383063 - Pden_0309 - periplasmic iron-binding protein 307 68.60 0 290820..291491 + 223 119383064 - Pden_0310 - two component transcriptional regulator 308 73.72 +1 291488..292918 + 476 119383065 - Pden_0311 - integral membrane sensor signal transduction histidine kinase 309 62.37 0 293052..294146 + 364 119383066 - Pden_0312 - hypothetical protein 310 69.11 0 294237..295178 + 313 119383067 - Pden_0313 - hypothetical protein 311 65.27 0 295262..295834 + 190 119383068 - Pden_0314 - AmiS/UreI transporter 312 70.31 0 295835..297919 - 694 119383069 - Pden_0315 - oxidoreductase domain-containing protein 313 67.60 0 297929..298891 - 320 119383070 - Pden_0316 - glycosyl transferase family protein 314 70.97 +1 298982..300166 - 394 119383071 - Pden_0317 - CBS domain-containing protein 315 70.02 0 300271..300927 - 218 119383072 - Pden_0318 - GntR family transcriptional regulator 316 67.23 0 301221..302456 + 411 119383073 - Pden_0319 - hypothetical protein 317 72.09 +1 302525..303298 + 257 119383074 - Pden_0320 - LamB/YcsF family protein 318 70.08 0 303295..304086 + 263 119383075 - Pden_0321 - hypothetical protein 319 72.34 +1 304074..305642 + 522 119383076 - Pden_0322 - allophanate hydrolase subunit 2 320 70.40 0 305639..307405 + 588 119383077 - Pden_0323 - carbamoyl-phosphate synthase L chain, ATP-binding 321 69.48 0 307485..308516 + 343 119383078 - Pden_0324 - putative ammonia monooxygenase 322 70.92 +1 308566..309129 + 187 119383079 - Pden_0325 - hypothetical protein 323 67.92 0 309179..310213 - 344 119383080 - Pden_0326 - luciferase family protein 324 69.44 0 310210..311184 - 324 119383081 - Pden_0327 - LysR family transcriptional regulator 325 68.15 0 311304..312248 + 314 119383082 - Pden_0328 - glyoxalase/bleomycin resistance protein/dioxygenase 326 67.16 0 312401..312802 + 133 119383083 - Pden_0329 - hypothetical protein 327 64.65 0 312834..313427 - 197 119383084 - Pden_0330 - NADPH-dependent FMN reductase 328 70.52 0 313684..315213 - 509 119383085 - Pden_0331 - glyoxalase/bleomycin resistance protein/dioxygenase 329 69.26 0 315226..315843 - 205 119383086 - Pden_0332 - glutathione S-transferase domain-containing protein 330 70.30 0 315957..316754 - 265 119383087 trpA Pden_0333 - tryptophan synthase subunit alpha 331 66.30 0 316884..317981 + 365 119383088 - Pden_0334 - translation-associated GTPase 332 64.43 0 318371..319441 - 356 119383089 - Pden_0335 - phage integrase family protein 333 53.33 -2 319640..319954 - 104 119383090 - Pden_0336 - hypothetical protein 334 69.41 0 319992..320720 - 242 119383091 - Pden_0337 - hypothetical protein 335 65.32 0 320717..321160 - 147 119383092 - Pden_0338 - hypothetical protein 336 65.12 0 321356..322261 - 301 119383093 - Pden_0339 - hypothetical protein 337 62.86 0 322258..322677 - 139 119383094 - Pden_0340 - hypothetical protein 338 65.08 0 322674..325319 - 881 119383095 - Pden_0341 - DNA methylase N-4/N-6 domain-containing protein 339 65.15 0 325323..326441 - 372 119383096 - Pden_0342 - DNA polymerase III, beta subunit 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0