IslandPathversion 1.0

IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.57 STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2638	 64.77	0	2678889..2679467	+	192	119385395	-	Pden_2668	-	hypothetical protein
2639	 63.32	0	2679482..2680078	-	198	119385396	-	Pden_2669	-	outer membrane lipoprotein carrier protein LolA
2640	 71.83	+1	2680168..2681427	-	419	119385397	-	Pden_2670	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
2641	 72.85	+1	2681521..2682846	+	441	119385398	-	Pden_2671	-	amidase
2642	 68.68	0	2682975..2684168	+	397	119385399	-	Pden_2672	-	aminotransferase, class I and II
2643	 67.78	0	2684172..2686856	+	894	119385400	-	Pden_2673	-	cell divisionFtsK/SpoIIIE
2644	 72.24	+1	2686926..2687822	-	298	119385401	-	Pden_2674	-	hypothetical protein
2645	 69.99	0	2687928..2689010	-	360	119385402	-	Pden_2675	-	secretion protein HlyD family protein
2646	 67.93	0	2689007..2690668	-	553	119385403	-	Pden_2676	-	putative transport protein transmembrane
2647	 67.10	0	2690665..2691126	-	153	119385404	-	Pden_2677	-	MarR family transcriptional regulator
2648	 69.82	0	2691217..2695722	-	1501	119385405	-	Pden_2678	-	hypothetical protein
2649	 68.84	0	2695722..2697605	-	627	119385406	-	Pden_2679	-	surface antigen (D15)
2650	 71.10	+1	2697697..2698620	-	307	119385407	-	Pden_2680	-	glucokinase
2651	 70.05	0	2698786..2699229	+	147	119385408	-	Pden_2681	-	hypothetical protein
2652	 64.08	0	2699299..2700690	+	463	119385409	-	Pden_2682	-	S-adenosyl-L-homocysteine hydrolase
2653	 65.33	0	2700753..2701202	+	149	119385410	-	Pden_2683	-	histidine triad (HIT) protein
2654	 60.53	-1	2701280..2701621	+	113	119385411	-	Pden_2684	-	hypothetical protein
2655	 72.62	+1	2701707..2702327	-	206	119385412	-	Pden_2685	-	enoyl-CoA hydratase/isomerase
2656	 64.93	0	2702411..2703961	+	516	119385413	-	Pden_2686	-	hypothetical protein
2657	 72.28	+1	2704057..2705409	+	450	119385414	-	Pden_2687	-	peptidase U62, modulator of DNA gyrase
2658	 73.36	+1	2705396..2706217	+	273	119385415	-	Pden_2688	-	inositol monophosphatase
2659	 73.26	+1	2706278..2706823	+	181	119385416	-	Pden_2689	-	flavin reductase domain-containing protein
2660	 68.76	0	2706830..2707306	-	158	119385417	-	Pden_2690	-	hypothetical protein
2661	 72.66	+1	2707385..2708035	-	216	119385418	-	Pden_2691	-	hypothetical protein
2662	 68.36	0	2708037..2710103	-	688	119385419	-	Pden_2692	-	hypothetical protein
2663	 67.42	0	2710100..2710759	-	219	119385420	-	Pden_2693	-	paraquat-inducible protein A
2664	 67.69	0	2710756..2711436	-	226	119385421	-	Pden_2694	-	paraquat-inducible protein A
2665	 64.29	0	2711699..2712499	+	266	119385422	-	Pden_2695	-	putative chemotaxis MotB protein
2666	 63.16	0	2712587..2713927	+	446	119385423	-	Pden_2696	-	hypothetical protein
2667	 62.42	0	2713983..2715443	+	486	119385424	flgK	Pden_2697	-	flagellar hook-associated protein FlgK
2668	 58.14	-2	2715440..2716459	+	339	119385425	-	Pden_2698	-	putative flagellar hook-associated protein
2669	 61.22	-1	2716456..2717556	+	366	119385426	flgI	Pden_2699	-	flagellar basal body P-ring protein
2670	 60.21	-1	2719808..2720194	-	128	119385427	-	Pden_2703	-	transposase, IS4 family protein
2671	 61.52	-1	2720191..2720559	-	122	119385428	-	Pden_2704	-	transposase and inactivated derivative
2672	 61.44	-1	2720874..2721524	-	216	119385429	-	Pden_2705	-	carbonate dehydratase
2673	 67.95	0	2721656..2722045	+	129	119385430	-	Pden_2706	-	hypothetical protein
2674	 71.08	+1	2722118..2723521	+	467	119385431	-	Pden_2707	-	leucyl aminopeptidase
2675	 72.91	+1	2723518..2724366	+	282	119385432	-	Pden_2708	-	NLP/P60 protein
2676	 69.51	0	2724389..2725444	+	351	119385433	-	Pden_2709	-	NAD(P) transhydrogenase subunit alpha
2677	 71.48	+1	2725508..2726692	+	394	119385434	-	Pden_2710	-	glucose sorbosone dehydrogenase
2678	 63.71	0	2726876..2727247	-	123	119385435	-	Pden_2711	-	hypothetical protein
2679	 67.90	0	2727297..2727944	-	215	119385436	-	Pden_2712	-	hypothetical protein
2680	 71.06	+1	2727941..2729761	-	606	119385437	mutL	Pden_2713	-	DNA mismatch repair protein
2681	 67.88	0	2729805..2731118	-	437	119385438	-	Pden_2714	-	peptidase M16 domain-containing protein
2682	 67.94	0	2731115..2732533	-	472	119385439	-	Pden_2715	-	peptidase M16 domain-containing protein
2683	 70.86	+1	2732634..2733206	-	190	119385440	-	Pden_2716	-	hypothetical protein
2684	 68.27	0	2733238..2733921	-	227	119385441	-	Pden_2717	-	lipoprotein signal peptidase
2685	 68.81	0	2733921..2735510	-	529	119385442	purH	Pden_2718	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2686	 73.03	+1	2735550..2737199	-	549	119385443	-	Pden_2719	-	heparinase II/III family protein
2687	 73.63	+1	2737230..2738837	-	535	119385444	-	Pden_2720	-	Fmu (Sun) domain-containing protein
2688	 70.43	0	2738891..2740060	+	389	119385445	-	Pden_2721	-	RND family efflux transporter MFP subunit
2689	 66.96	0	2740064..2743162	+	1032	119385446	-	Pden_2722	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
2690	 70.31	0	2743159..2744202	+	347	119385447	-	Pden_2723	-	selenophosphate synthetase
2691	 76.50	+2	2744297..2744662	+	121	119385448	-	Pden_2724	-	hypothetical protein
2692	 67.86	0	2744730..2745149	+	139	119385449	-	Pden_2725	-	hypothetical protein
2693	 68.04	0	2745472..2746125	+	217	119385450	-	Pden_2726	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
2694	 67.74	0	2746148..2747542	+	464	119385451	-	Pden_2727	-	TolC family type I secretion outer membrane protein
2695	 67.68	0	2747569..2748357	+	262	119385452	-	Pden_2728	-	hypothetical protein
2696	 70.26	0	2748435..2749604	-	389	119385453	-	Pden_2729	-	peptidase M23B
2697	 68.51	0	2749636..2750286	-	216	119385454	-	Pden_2730	-	protein-L-isoaspartate O-methyltransferase
2698	 68.30	0	2750295..2751089	-	264	119385455	-	Pden_2731	-	stationary-phase survival protein SurE
2699	 65.48	0	2751281..2752204	+	307	119385456	-	Pden_2732	-	hypothetical protein
2700	 69.55	0	2752201..2752998	+	265	119385457	-	Pden_2733	-	hypothetical protein
2701	 67.62	0	2752985..2754142	-	385	119385458	-	Pden_2734	-	hypothetical protein
2702	 68.92	0	2754163..2754918	-	251	119385459	-	Pden_2735	-	glycerophosphoryl diester phosphodiesterase
2703	 69.84	0	2754918..2755358	-	146	119385460	-	Pden_2736	-	endoribonuclease L-PSP
2704	 60.93	-1	2755368..2755820	-	150	119385461	-	Pden_2737	-	hypothetical protein
2705	 71.95	+1	2755866..2759369	-	1167	119385462	-	Pden_2738	-	chromosome segregation protein SMC
2706	 68.64	0	2759463..2759816	+	117	119385463	-	Pden_2739	-	LrgA family protein
2707	 68.62	0	2759813..2760529	+	238	119385464	-	Pden_2740	-	LrgB family protein
2708	 60.72	-1	2760542..2761012	-	156	119385465	-	Pden_2741	-	hypothetical protein
2709	 64.22	0	2761122..2761448	-	108	119385466	-	Pden_2742	-	hypothetical protein
2710	 61.52	-1	2761790..2762353	+	187	119385467	-	Pden_2743	-	elongation factor P
2711	 70.99	+1	2762441..2763574	+	377	119385468	-	Pden_2744	-	acetyltransferase-like
2712	 62.35	-1	2763832..2764896	+	354	119385469	-	Pden_2745	-	putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
2713	 66.29	0	2764956..2766530	+	524	119385470	-	Pden_2746	-	ABC transporter related
2714	 64.56	0	2766523..2767707	+	394	119385471	-	Pden_2747	-	inner-membrane translocator
2715	 73.42	+1	2767704..2768606	+	300	119385472	-	Pden_2748	-	2-keto-3-deoxy-galactonokinase
2716	 72.31	+1	2768603..2769205	+	200	119385473	-	Pden_2749	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
2717	 70.23	0	2769202..2770044	+	280	119385474	-	Pden_2750	-	SMP-30/gluconolaconase/LRE domain-containing protein
2718	 68.94	0	2770041..2771051	+	336	119385475	-	Pden_2751	-	aldose 1-epimerase
2719	 71.51	+1	2771095..2771817	+	240	119385476	-	Pden_2752	-	GntR family transcriptional regulator
2720	 70.80	+1	2771858..2772703	-	281	119385477	-	Pden_2753	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
2721	 69.92	0	2772733..2773470	-	245	119385478	-	Pden_2754	-	short-chain dehydrogenase/reductase SDR
2722	 66.80	0	2773558..2775009	-	483	119385479	-	Pden_2755	-	aldehyde dehydrogenase
2723	 63.93	0	2775171..2775827	+	218	119385480	-	Pden_2756	-	peroxidase
2724	 64.13	0	2775867..2776655	-	262	119385481	-	Pden_2757	-	glycosyl transferase family protein
2725	 61.19	-1	2776652..2777455	-	267	119385482	-	Pden_2758	-	hypothetical protein
2726	 64.99	0	2777503..2779713	-	736	119385483	-	Pden_2759	-	polynucleotide phosphorylase/polyadenylase
2727	 59.63	-1	2780143..2780412	-	89	119385484	rpsO	Pden_2760	-	30S ribosomal protein S15
2728	 69.03	0	2780558..2781487	-	309	119385485	-	Pden_2761	-	type I secretion target repeat-containing protein
2729	 68.35	0	2781594..2782247	-	217	119385486	-	Pden_2762	-	alanine racemase domain-containing protein
2730	 61.23	-1	2782317..2783438	-	373	119385487	-	Pden_2763	-	outer membrane porin
2731	 70.39	0	2783615..2784124	+	169	119385488	-	Pden_2764	-	hypothetical protein
2732	 67.42	0	2784200..2786734	+	844	119385489	leuS	Pden_2765	-	leucyl-tRNA synthetase
2733	 69.75	0	2786721..2787206	+	161	119385490	-	Pden_2766	-	secreted periplasmic protein
2734	 71.72	+1	2787203..2788231	+	342	119385491	-	Pden_2767	-	DNA polymerase III, delta subunit
2735	 72.72	+1	2788228..2789433	+	401	119385492	-	Pden_2768	-	hypothetical protein
2736	 65.82	0	2789409..2789996	-	195	119385493	-	Pden_2769	-	glutathione S-transferase domain-containing protein
2737	 66.59	0	2790118..2791362	+	414	119385494	-	Pden_2770	-	major facilitator transporter
66.57	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.