version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2430 70.07 0 2470943..2472706 + 587 119385187 - Pden_2460 - polypeptide-transport-associated domain-containing protein 2431 72.51 +1 2472753..2477666 + 1637 119385188 - Pden_2461 - filamentous haemagglutinin outer membrane protein 2432 72.51 +1 2477635..2479584 + 649 119385189 - Pden_2462 - peptidase C14, caspase catalytic subunit p20 2433 60.82 -1 2479845..2480135 - 96 119385190 - Pden_2463 - hypothetical protein 2434 65.97 0 2480226..2480945 - 239 119385191 - Pden_2464 - hypothetical protein 2435 63.17 0 2480963..2482648 - 561 119385192 - Pden_2465 - hemolysin-type calcium-binding region 2436 65.80 0 2482759..2483106 - 115 119385193 - Pden_2466 - hypothetical protein 2437 55.66 -2 2483174..2484091 - 305 119385194 - Pden_2467 - response regulator receiver protein 2438 69.03 0 2484647..2485534 + 295 119385195 - Pden_2468 - cation diffusion facilitator family transporter 2439 68.18 0 2485531..2486523 - 330 119385196 - Pden_2469 - ABC transporter related 2440 63.10 0 2486561..2487400 - 279 119385197 - Pden_2470 - binding-protein-dependent transport systems inner membrane component 2441 63.51 0 2487410..2488327 - 305 119385198 - Pden_2471 - binding-protein-dependent transport systems inner membrane component 2442 65.63 0 2488422..2489681 - 419 119385199 - Pden_2472 - extracellular solute-binding protein 2443 72.35 +1 2489730..2490608 - 292 119385200 murQ Pden_2473 - N-acetylmuramic acid-6-phosphate etherase 2444 73.50 +1 2490761..2491594 + 277 119385201 - Pden_2474 - ATPase, BadF/BadG/BcrA/BcrD type 2445 69.53 0 2491594..2492361 + 255 119385202 - Pden_2475 - UbiC transcription regulator-associated domain-containing protein 2446 71.44 +1 2492361..2493386 + 341 119385203 - Pden_2476 - glutamine--fructose-6-phosphate transaminase (isomerizing) 2447 72.64 +1 2493386..2494507 + 373 119385204 - Pden_2477 - N-acetylglucosamine-6-phosphate deacetylase 2448 65.73 0 2494525..2495274 + 249 119385205 - Pden_2478 - CRP/FNR family transcriptional regulator 2449 67.52 0 2495469..2495702 - 77 119385206 - Pden_2479 - hypothetical protein 2450 70.95 +1 2495706..2496242 - 178 119385207 - Pden_2480 - cytochrome c oxidase, subunit III 2451 71.31 +1 2496242..2498158 - 638 119385208 - Pden_2481 - von Willebrand factor, type A 2452 69.00 0 2498170..2498982 - 270 119385209 - Pden_2482 - ATPase 2453 62.42 0 2498986..2500374 - 462 119385210 - Pden_2483 - cytochrome c oxidase, subunit I 2454 61.15 -1 2500388..2500840 - 150 119385211 - Pden_2484 - nitric-oxide reductase 2455 73.55 +1 2500915..2501829 - 304 119385212 - Pden_2485 - ApbE family lipoprotein 2456 70.28 0 2501826..2503871 - 681 119385213 - Pden_2486 - FMN-binding domain-containing protein 2457 64.15 0 2503999..2505789 + 596 119385214 - Pden_2487 - hydroxylamine reductase 2458 72.22 +1 2505861..2506724 + 287 119385215 - Pden_2488 - uroporphyrin-III C-methyltransferase 2459 71.15 +1 2506717..2507028 + 103 119385216 - Pden_2489 - cytochrome c (c55X) 2460 69.00 0 2507025..2508179 + 384 119385217 - Pden_2490 - cytochrome d1, heme region 2461 72.63 +1 2508182..2509153 + 323 119385218 - Pden_2491 - AsnC family transcriptional regulator 2462 68.14 0 2509150..2509623 + 157 119385219 - Pden_2492 - AsnC family transcriptional regulator 2463 68.32 0 2509620..2510102 + 160 119385220 - Pden_2493 - AsnC family transcriptional regulator 2464 68.22 0 2510116..2511339 + 407 119385221 - Pden_2494 - radical SAM domain-containing protein 2465 65.64 0 2511314..2512768 + 484 119385222 - Pden_2495 - cytochrome d1, heme region 2466 70.41 0 2512725..2512991 + 88 119385223 - Pden_2496 - hypothetical protein 2467 66.48 0 2513247..2515424 + 725 119385224 - Pden_2497 - catalase/peroxidase HPI 2468 71.34 +1 2515560..2517761 - 733 119385225 - Pden_2498 - primosome assembly protein PriA 2469 63.30 0 2518051..2518704 + 217 119385226 - Pden_2499 - putative translaldolase 2470 70.04 0 2518704..2519414 + 236 119385227 - Pden_2500 - hypothetical protein 2471 72.20 +1 2519411..2520349 + 312 119385228 xerC Pden_2501 - site-specific tyrosine recombinase XerC 2472 69.70 0 2520515..2521273 + 252 119385229 - Pden_2502 - hypothetical protein 2473 70.01 0 2521311..2522297 - 328 119385230 - Pden_2503 - L-asparaginase II 2474 67.99 0 2522449..2522976 + 175 119385231 - Pden_2504 - hypothetical protein 2475 66.50 0 2523082..2524257 + 391 119385232 - Pden_2505 - radical SAM protein 2476 68.37 0 2524476..2525999 + 507 119385233 - Pden_2506 - phosphoglyceromutase 2477 69.74 0 2525996..2527231 + 411 119385234 - Pden_2507 - peptidase M23B 2478 65.11 0 2527228..2528643 + 471 119385235 - Pden_2508 - carboxyl-terminal protease 2479 67.48 0 2528640..2529131 + 163 119385236 - Pden_2509 - NUDIX hydrolase 2480 69.78 0 2529222..2530475 - 417 119385237 - Pden_2510 - lytic murein transglycosylase 2481 67.92 0 2530564..2530881 - 105 119385238 - Pden_2511 - hypothetical protein 2482 71.13 +1 2530938..2531408 + 156 119385239 - Pden_2512 - YbaK/prolyl-tRNA synthetase associated region 2483 66.27 0 2531453..2531704 - 83 119385240 - Pden_2513 - transglycosylase-associated protein 2484 65.58 0 2531809..2532633 - 274 119385241 dapD Pden_2514 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 2485 65.61 0 2532699..2533553 + 284 119385242 - Pden_2515 - hypothetical protein 2486 67.05 0 2533772..2534299 - 175 119385243 - Pden_2516 - hypothetical protein 2487 71.37 +1 2534412..2534879 - 155 119385244 - Pden_2517 - hypothetical protein 2488 68.17 0 2534883..2535215 - 110 119385245 - Pden_2518 - iojap-like protein 2489 67.95 0 2535414..2535647 - 77 119385246 - Pden_2519 - hypothetical protein 2490 67.85 0 2535943..2537379 + 478 119385247 - Pden_2520 - isopropylmalate isomerase large subunit 2491 65.64 0 2537397..2537981 - 194 119385248 - Pden_2521 - hypothetical protein 2492 61.55 -1 2538074..2538679 + 201 119385249 leuD Pden_2522 - isopropylmalate isomerase small subunit 2493 71.89 +1 2538670..2539722 + 350 119385250 - Pden_2523 - hypothetical protein 2494 68.36 0 2540009..2540185 + 58 119385251 - Pden_2524 - hypothetical protein 2495 68.38 0 2540187..2540885 + 232 119385252 - Pden_2525 - cobalt transporter, subunit CbtA 2496 71.35 +1 2540955..2541488 + 177 119385253 - Pden_2526 - hypothetical protein 2497 70.03 0 2541488..2542111 + 207 119385254 - Pden_2527 - cob(II)yrinic acid a,c-diamide reductase 2498 63.07 0 2542115..2542531 - 138 119385255 - Pden_2528 - hypothetical protein 2499 63.89 0 2542536..2543147 - 203 119385256 - Pden_2529 - cob(I)yrinic acid a,c-diamide adenosyltransferase 2500 73.45 +1 2543463..2543816 + 117 119385257 - Pden_2530 - hypothetical protein 2501 69.37 0 2543820..2544854 + 344 119385258 - Pden_2531 - cobalamin biosynthesis protein CobW 2502 71.81 +1 2544858..2548028 + 1056 119385259 cobN Pden_2532 - cobaltochelatase 2503 73.20 +1 2548025..2549188 + 387 119385260 - Pden_2533 - precorrin-3B synthase 2504 71.90 +1 2549232..2549861 + 209 119385261 cobH Pden_2534 - precorrin-8X methylmutase 2505 69.42 0 2549864..2550625 + 253 119385262 - Pden_2535 - precorrin-2 C20-methyltransferase 2506 71.88 +1 2550622..2551350 + 242 119385263 - Pden_2536 - precorrin-3B C17-methyltransferase 2507 72.58 +1 2551326..2552018 - 230 119385264 - Pden_2537 - precorrin-6A reductase 2508 72.72 +1 2552062..2553234 + 390 119385265 - Pden_2538 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 2509 74.93 +1 2553231..2553581 + 116 119385266 - Pden_2539 - precorrin methylase 2510 72.48 +1 2553578..2554351 + 257 119385267 - Pden_2540 - precorrin-4 C11-methyltransferase 2511 71.63 +1 2554348..2555637 + 429 119385268 - Pden_2541 - cobyrinic acid a,c-diamide synthase 2512 69.87 0 2555634..2556383 + 249 119385269 - Pden_2542 - precorrin 6A synthase 2513 74.11 +1 2556368..2556676 + 102 119385270 - Pden_2543 - hypothetical protein 2514 66.04 0 2557025..2557504 + 159 119385271 - Pden_2544 - cytochrome c, class II 2515 64.95 0 2557504..2558085 + 193 119385272 - Pden_2545 - cytochrome B561 2516 67.16 0 2558375..2560618 - 747 119385273 - Pden_2546 - DNA topoisomerase IV subunit A 2517 69.72 0 2560721..2561539 + 272 119385274 - Pden_2547 - short-chain dehydrogenase/reductase SDR 2518 60.70 -1 2561564..2561764 + 66 119385275 - Pden_2548 - hypothetical protein 2519 68.76 0 2561764..2562336 + 190 119385276 - Pden_2549 - ATP--cobalamin adenosyltransferase 2520 66.40 0 2562457..2563215 + 252 119385277 - Pden_2550 - electron transfer flavoprotein beta-subunit 2521 70.33 0 2563215..2564141 + 308 119385278 - Pden_2551 - electron transfer flavoprotein, alpha subunit 2522 63.58 0 2564340..2565215 + 291 119385279 - Pden_2552 - 3-hydroxybutyryl-CoA dehydrogenase 2523 70.77 0 2565291..2565875 - 194 119385280 - Pden_2553 - hypothetical protein 2524 71.15 +1 2565872..2567143 - 423 119385281 - Pden_2554 - dihydroorotase, multifunctional complex type 2525 66.15 0 2567140..2568099 - 319 119385282 pyrB Pden_2555 - aspartate carbamoyltransferase catalytic subunit 2526 72.11 +1 2568202..2568936 + 244 119385283 - Pden_2556 - uroporphyrin-III C-methyltransferase 2527 69.57 0 2569020..2569535 + 171 119385284 - Pden_2557 - hypothetical protein 2528 72.43 +1 2569538..2569780 + 80 119385285 - Pden_2558 - SirA family protein 2529 68.71 0 2569780..2570709 + 309 119385286 - Pden_2559 - auxin efflux carrier 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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