IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.57   STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1994	 72.73	+1	2025475..2027979	-	834	119384751	-	Pden_2019	-	hypothetical protein
1995	 66.98	0	2028070..2029335	-	421	119384752	-	Pden_2020	-	diaminopimelate decarboxylase
1996	 69.20	0	2029335..2029610	-	91	119384753	-	Pden_2021	-	hypothetical protein
1997	 67.45	0	2029755..2031164	-	469	119384754	-	Pden_2022	-	argininosuccinate lyase
1998	 70.78	0	2031256..2031741	+	161	119384755	-	Pden_2023	-	redoxin domain-containing protein
1999	 65.47	0	2031719..2032303	-	194	119384756	-	Pden_2024	-	DNA-3-methyladenine glycosylase I
2000	 64.13	0	2032396..2033223	+	275	119384757	-	Pden_2025	-	diguanylate phosphodiesterase
2001	 68.45	0	2033477..2034652	+	391	119384758	-	Pden_2026	-	acetyl-CoA acetyltransferase
2002	 63.91	0	2034739..2035464	+	241	119384759	-	Pden_2027	-	acetoacetyl-CoA reductase
2003	 54.79	-2	2035563..2035781	-	72	119384760	-	Pden_2028	-	hypothetical protein
2004	 71.54	+1	2035786..2036544	-	252	119384761	-	Pden_2029	-	methyltransferase small
2005	 64.79	0	2036537..2036749	-	70	119384762	-	Pden_2030	-	hypothetical protein
2006	 68.86	0	2036825..2037826	+	333	119384763	-	Pden_2031	-	trans-hexaprenyltranstransferase
2007	 66.25	0	2037929..2039377	-	482	119384764	-	Pden_2032	-	ammonium transporter
2008	 68.90	0	2039634..2041964	+	776	119384765	-	Pden_2033	-	1A family penicillin-binding protein
2009	 66.34	0	2042017..2042622	-	201	119384766	-	Pden_2034	-	toluene tolerance family protein
2010	 65.43	0	2042603..2043328	-	241	119384767	-	Pden_2035	-	VacJ family lipoprotein
2011	 69.99	0	2043489..2045231	+	580	119384768	-	Pden_2036	-	type I secretion system ATPase
2012	 68.76	0	2045228..2046661	+	477	119384769	-	Pden_2037	-	HlyD family type I secretion membrane fusion protein
2013	 66.67	0	2046692..2046952	+	86	119384770	-	Pden_2038	-	hypothetical protein
2014	 64.72	0	2047060..2047986	-	308	119384771	-	Pden_2039	-	ornithine carbamoyltransferase
2015	 69.60	0	2048084..2048560	-	158	119384772	-	Pden_2040	-	GCN5-related N-acetyltransferase
2016	 68.54	0	2048553..2049725	-	390	119384773	-	Pden_2041	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
2017	 65.82	0	2049899..2050720	-	273	119384774	-	Pden_2042	-	ABC-2 type transporter
2018	 73.27	+1	2050852..2051457	+	201	119384775	-	Pden_2043	-	GcrA cell cycle regulator
2019	 73.65	+1	2051458..2051901	+	147	119384776	-	Pden_2044	-	NUDIX hydrolase
2020	 64.34	0	2052010..2053728	+	572	119384777	-	Pden_2045	-	methionyl-tRNA synthetase
2021	 63.17	0	2053922..2056063	+	713	119384778	-	Pden_2046	-	TonB-dependent receptor
2022	 68.62	0	2056156..2057076	+	306	119384779	-	Pden_2047	-	arginase
2023	 63.91	0	2057392..2057754	-	120	119384780	-	Pden_2048	-	hypothetical protein
2024	 63.68	0	2057841..2058308	-	155	119384781	-	Pden_2049	-	hypothetical protein
2025	 62.67	0	2059246..2059770	-	174	119384782	-	Pden_2050	-	hypothetical protein
2026	 62.37	-1	2059763..2060041	-	92	119384783	-	Pden_2051	-	hypothetical protein
2027	 63.33	0	2060592..2060891	+	99	119384784	-	Pden_2052	-	hypothetical protein
2028	 63.47	0	2060891..2061109	+	72	119384785	-	Pden_2053	-	hypothetical protein
2029	 55.30	-2	2061405..2062328	+	307	119384786	-	Pden_2054	-	hypothetical protein
2030	 67.64	0	2063243..2063758	+	171	119384787	-	Pden_2055	-	hypothetical protein
2031	 66.81	0	2063766..2065175	-	469	119384788	-	Pden_2056	-	hypothetical protein
2032	 63.68	0	2065343..2065744	+	133	119384789	-	Pden_2057	-	hypothetical protein
2033	 67.44	0	2065737..2066510	-	257	119384790	-	Pden_2058	-	hypothetical protein
2034	 61.29	-1	2066523..2066894	-	123	119384791	-	Pden_2059	-	IS5 family transposase OrfA
2035	 53.64	-2	2067123..2067452	+	109	119384792	-	Pden_2060	-	HNH endonuclease
2036	 62.83	0	2067435..2068970	-	511	119384793	-	Pden_2061	-	DNA-cytosine methyltransferase
2037	 63.23	0	2069038..2069502	+	154	119384794	-	Pden_2062	-	DNA mismatch endonuclease vsr
2038	 66.46	0	2069678..2070169	-	163	119384795	-	Pden_2063	-	phage terminase large subunit
2039	 67.73	0	2070153..2070623	-	156	119384796	-	Pden_2064	-	P27 family phage terminase small subunit
2040	 58.45	-1	2070830..2071036	+	68	119384797	-	Pden_2065	-	cold-shock DNA-binding domain-containing protein
2041	 59.15	-1	2071116..2071421	+	101	119384798	-	Pden_2066	-	hypothetical protein
2042	 60.89	-1	2071691..2071915	-	74	119384799	-	Pden_2067	-	hypothetical protein
2043	 67.03	0	2071912..2073303	-	463	119384800	-	Pden_2068	-	nuclease
2044	 68.43	0	2073402..2073797	-	131	119384801	-	Pden_2069	-	HNH endonuclease
2045	 70.37	0	2073885..2074262	-	125	119384802	-	Pden_2070	-	hypothetical protein
2046	 63.80	0	2074255..2074743	-	162	119384803	-	Pden_2071	-	hypothetical protein
2047	 67.27	0	2074747..2076405	-	552	119384804	-	Pden_2072	-	hypothetical protein
2048	 62.19	-1	2076402..2076602	-	66	119384805	-	Pden_2073	-	hypothetical protein
2049	 69.58	0	2076726..2076965	+	79	119384806	-	Pden_2074	-	putative plasmid stability protein
2050	 65.52	0	2076962..2077396	+	144	119384807	-	Pden_2075	-	PilT domain-containing protein
2051	 64.85	0	2077384..2078100	-	238	119384808	-	Pden_2076	-	ECF subfamily RNA polymerase sigma-24 factor
2052	 67.52	0	2078198..2078431	-	77	119384809	-	Pden_2077	-	hypothetical protein
2053	 61.49	-1	2078525..2080687	-	720	119384810	-	Pden_2078	-	hypothetical protein
2054	 59.22	-1	2080770..2081024	+	84	119384811	-	Pden_2079	-	hypothetical protein
2055	 63.38	0	2081021..2081476	+	151	119384812	-	Pden_2080	-	hypothetical protein
2056	 64.56	0	2081476..2082801	+	441	119384813	-	Pden_2081	-	recombinase
2057	 65.10	0	2082798..2083181	+	127	119384814	-	Pden_2082	-	hypothetical protein
2058	 67.62	0	2083185..2084021	-	278	119384815	-	Pden_2083	-	hypothetical protein
2059	 63.95	0	2084031..2084288	-	85	119384816	-	Pden_2084	-	hypothetical protein
2060	 62.38	0	2084523..2085431	+	302	119384817	-	Pden_2085	-	hypothetical protein
2061	 60.95	-1	2085415..2087601	+	728	119384818	-	Pden_2086	-	RNA polymerase, sigma 32 subunit, RpoH
2062	 64.40	0	2087606..2089108	+	500	119384819	-	Pden_2087	-	hypothetical protein
2063	 60.01	-1	2089105..2091972	+	955	119384820	-	Pden_2088	-	endonuclease
2064	 62.49	0	2091956..2092960	+	334	119384821	-	Pden_2089	-	hypothetical protein
2065	 58.46	-1	2092962..2094764	+	600	119384822	-	Pden_2090	-	hypothetical protein
2066	 52.99	-2	2094772..2095239	+	155	119384823	-	Pden_2091	-	hypothetical protein
2067	 62.57	0	2095223..2095783	-	186	119384824	-	Pden_2092	-	transposase, IS4 family protein
2068	 71.51	+1	2096063..2097922	+	619	119384825	-	Pden_2093	-	3-deoxy-D-manno-octulosonic-acid transferase-like
2069	 72.73	+1	2097919..2098908	+	329	119384826	-	Pden_2094	-	tetraacyldisaccharide 4'-kinase
2070	 63.54	0	2098948..2099619	-	223	119384827	-	Pden_2095	-	DSBA oxidoreductase
2071	 69.98	0	2099616..2100158	-	180	119384828	-	Pden_2096	-	hypothetical protein
2072	 70.72	0	2100310..2101296	+	328	119384829	-	Pden_2097	-	HhH-GPD family protein
2073	 63.52	0	2101374..2102516	+	380	119384830	-	Pden_2098	-	alkane 1-monooxygenase
2074	 65.65	0	2102511..2103296	-	261	119384831	-	Pden_2099	-	hypothetical protein
2075	 69.52	0	2103293..2104414	-	373	119384832	-	Pden_2100	-	hypothetical protein
2076	 65.69	0	2104472..2105602	-	376	119384833	-	Pden_2101	-	DNA methylase N-4/N-6 domain-containing protein
2077	 67.93	0	2105691..2106323	-	210	119384834	-	Pden_2102	-	ribonuclease H
2078	 69.79	0	2106320..2106799	-	159	119384835	-	Pden_2103	-	ureidoglycolate hydrolase
2079	 65.31	0	2106857..2108032	-	391	119384836	-	Pden_2104	-	major facilitator transporter
2080	 67.87	0	2108324..2109073	+	249	119384837	-	Pden_2105	-	UbiC transcription regulator-associated domain-containing protein
2081	 70.24	0	2109183..2110664	+	493	119384838	-	Pden_2106	-	ErfK/YbiS/YcfS/YnhG family protein
2082	 70.13	0	2110666..2111502	+	278	119384839	-	Pden_2107	-	extensin family protein
2083	 65.16	0	2111506..2112237	-	243	119384840	-	Pden_2108	-	CRP/FNR family transcriptional regulator
2084	 69.81	0	2112344..2113678	-	444	119384841	-	Pden_2109	-	FliI/YscN family ATPase
2085	 68.46	0	2113787..2114176	+	129	119384842	flgB	Pden_2110	-	flagellar basal body rod protein FlgB
2086	 63.61	0	2114188..2114580	+	130	119384843	flgC	Pden_2111	-	flagellar basal body rod protein FlgC
2087	 67.74	0	2114592..2114870	+	92	119384844	-	Pden_2112	-	flagellar hook-basal body complex protein FliE
2088	 62.55	0	2114881..2115147	+	88	119384845	-	Pden_2113	-	export protein FliQ
2089	 67.09	0	2115151..2115867	+	238	119384846	flgF	Pden_2114	-	flagellar basal body rod protein FlgF
2090	 65.90	0	2115879..2116664	+	261	119384847	flgG	Pden_2115	-	flagellar basal body rod protein FlgG
2091	 68.35	0	2116664..2117080	+	138	119384848	flgA	Pden_2116	-	flagellar basal body P-ring biosynthesis protein FlgA
2092	 66.27	0	2117091..2117843	+	250	119384849	flgH	Pden_2117	-	flagellar basal body L-ring protein
2093	 66.67	0	2117857..2118390	+	177	119384850	-	Pden_2118	-	hypothetical protein
66.57	MEAN

4.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.