IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.57   STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1952	 62.28	-1	1981544..1981885	+	113	119384709	-	Pden_1977	-	hypothetical protein
1953	 67.45	0	1982268..1983287	+	339	119384710	-	Pden_1978	-	periplasmic binding protein/LacI transcriptional regulator
1954	 67.15	0	1983453..1984283	-	276	119384711	-	Pden_1979	-	methionine aminopeptidase, type I
1955	 68.42	0	1984370..1985110	+	246	119384712	-	Pden_1980	-	molybdopterin binding domain-containing protein
1956	 73.61	+1	1985107..1985826	+	239	119384713	-	Pden_1981	-	GCN5-related N-acetyltransferase
1957	 71.58	+1	1985841..1986227	-	128	119384714	-	Pden_1982	-	hypothetical protein
1958	 68.41	0	1986242..1987042	-	266	119384715	-	Pden_1983	-	hypothetical protein
1959	 68.74	0	1987039..1988772	-	577	119384716	-	Pden_1984	-	dihydroxy-acid dehydratase
1960	 68.52	0	1988851..1989174	-	107	119384717	-	Pden_1985	-	transcriptional coactivator/pterin dehydratase
1961	 67.79	0	1989186..1990613	-	475	119384718	-	Pden_1986	-	phospholipase D/transphosphatidylase
1962	 66.56	0	1990702..1991643	+	313	119384719	-	Pden_1987	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
1963	 70.69	0	1991660..1992928	+	422	119384720	-	Pden_1988	-	FolC bifunctional protein
1964	 68.29	0	1992946..1994052	-	368	119384721	-	Pden_1989	-	AFG1 family ATPase
1965	 69.14	0	1994137..1994742	-	201	119384722	-	Pden_1990	-	hypothetical protein
1966	 71.37	+1	1994943..1996325	+	460	119384723	-	Pden_1991	-	aldehyde dehydrogenase
1967	 69.41	0	1996322..1997632	-	436	119384724	-	Pden_1992	-	major facilitator transporter
1968	 68.59	0	1997908..1999521	+	537	119384725	-	Pden_1993	-	hypothetical protein
1969	 65.52	0	1999629..2000324	-	231	119384726	-	Pden_1994	-	hypothetical protein
1970	 68.90	0	2000815..2002605	-	596	119384727	-	Pden_1995	-	HemY domain-containing protein
1971	 73.09	+1	2002568..2004139	-	523	119384728	-	Pden_1996	-	hypothetical protein
1972	 75.26	+2	2004193..2004867	-	224	119384729	-	Pden_1997	-	putative uroporphyrinogen-III synthase
1973	 72.46	+1	2004932..2006002	+	356	119384730	-	Pden_1998	-	metalloendopeptidase glycoprotease family
1974	 71.64	+1	2005999..2006943	+	314	119384731	-	Pden_1999	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
1975	 64.49	0	2006940..2007215	+	91	119384732	-	Pden_2000	-	YCII-related
1976	 64.79	0	2007215..2007640	+	141	119384733	-	Pden_2001	-	hypothetical protein
1977	 67.78	0	2007683..2009476	+	597	119384734	-	Pden_2002	-	lipid ABC transporter ATPase/inner membrane protein
1978	 67.14	0	2009604..2010026	-	140	119384735	-	Pden_2003	-	Allergen V5/Tpx-1 family protein
1979	 63.79	0	2010277..2010762	+	161	119384736	-	Pden_2004	-	hypothetical protein
1980	 66.83	0	2010891..2012780	+	629	119384737	-	Pden_2005	-	acyl-CoA synthetase
1981	 56.27	-2	2012982..2014001	+	339	119384738	-	Pden_2006	-	hypothetical protein
1982	 56.35	-2	2014058..2015065	+	335	119384739	-	Pden_2007	-	hypothetical protein
1983	 62.80	0	2015124..2016779	-	551	119384740	-	Pden_2008	-	putative ABC transporter ATP-binding protein
1984	 63.64	0	2016852..2017709	-	285	119384741	-	Pden_2009	-	sulfotransferase
1985	 67.03	0	2017786..2019177	-	463	119384742	-	Pden_2010	-	MiaB-like tRNA modifying enzyme YliG
1986	 64.33	0	2019275..2019745	+	156	119384743	-	Pden_2011	-	hypothetical protein
1987	 67.18	0	2019730..2020119	+	129	119384744	-	Pden_2012	-	hypothetical protein
1988	 63.91	0	2020124..2020885	-	253	119384745	-	Pden_2013	-	ABC-2 type transporter
1989	 66.88	0	2020882..2021811	-	309	119384746	-	Pden_2014	-	ABC transporter related
1990	 70.63	0	2021929..2022711	-	260	119384747	-	Pden_2015	-	phospholipid/glycerol acyltransferase
1991	 71.83	+1	2022711..2023640	-	309	119384748	-	Pden_2016	-	hypothetical protein
1992	 66.81	0	2023637..2024311	-	224	119384749	-	Pden_2017	-	ABC transporter related
1993	 71.67	+1	2024436..2025395	+	319	119384750	-	Pden_2018	-	Zinc finger-domain-containing protein
1994	 72.73	+1	2025475..2027979	-	834	119384751	-	Pden_2019	-	hypothetical protein
1995	 66.98	0	2028070..2029335	-	421	119384752	-	Pden_2020	-	diaminopimelate decarboxylase
1996	 69.20	0	2029335..2029610	-	91	119384753	-	Pden_2021	-	hypothetical protein
1997	 67.45	0	2029755..2031164	-	469	119384754	-	Pden_2022	-	argininosuccinate lyase
1998	 70.78	0	2031256..2031741	+	161	119384755	-	Pden_2023	-	redoxin domain-containing protein
1999	 65.47	0	2031719..2032303	-	194	119384756	-	Pden_2024	-	DNA-3-methyladenine glycosylase I
2000	 64.13	0	2032396..2033223	+	275	119384757	-	Pden_2025	-	diguanylate phosphodiesterase
2001	 68.45	0	2033477..2034652	+	391	119384758	-	Pden_2026	-	acetyl-CoA acetyltransferase
2002	 63.91	0	2034739..2035464	+	241	119384759	-	Pden_2027	-	acetoacetyl-CoA reductase
2003	 54.79	-2	2035563..2035781	-	72	119384760	-	Pden_2028	-	hypothetical protein
2004	 71.54	+1	2035786..2036544	-	252	119384761	-	Pden_2029	-	methyltransferase small
2005	 64.79	0	2036537..2036749	-	70	119384762	-	Pden_2030	-	hypothetical protein
2006	 68.86	0	2036825..2037826	+	333	119384763	-	Pden_2031	-	trans-hexaprenyltranstransferase
2007	 66.25	0	2037929..2039377	-	482	119384764	-	Pden_2032	-	ammonium transporter
2008	 68.90	0	2039634..2041964	+	776	119384765	-	Pden_2033	-	1A family penicillin-binding protein
2009	 66.34	0	2042017..2042622	-	201	119384766	-	Pden_2034	-	toluene tolerance family protein
2010	 65.43	0	2042603..2043328	-	241	119384767	-	Pden_2035	-	VacJ family lipoprotein
2011	 69.99	0	2043489..2045231	+	580	119384768	-	Pden_2036	-	type I secretion system ATPase
2012	 68.76	0	2045228..2046661	+	477	119384769	-	Pden_2037	-	HlyD family type I secretion membrane fusion protein
2013	 66.67	0	2046692..2046952	+	86	119384770	-	Pden_2038	-	hypothetical protein
2014	 64.72	0	2047060..2047986	-	308	119384771	-	Pden_2039	-	ornithine carbamoyltransferase
2015	 69.60	0	2048084..2048560	-	158	119384772	-	Pden_2040	-	GCN5-related N-acetyltransferase
2016	 68.54	0	2048553..2049725	-	390	119384773	-	Pden_2041	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
2017	 65.82	0	2049899..2050720	-	273	119384774	-	Pden_2042	-	ABC-2 type transporter
2018	 73.27	+1	2050852..2051457	+	201	119384775	-	Pden_2043	-	GcrA cell cycle regulator
2019	 73.65	+1	2051458..2051901	+	147	119384776	-	Pden_2044	-	NUDIX hydrolase
2020	 64.34	0	2052010..2053728	+	572	119384777	-	Pden_2045	-	methionyl-tRNA synthetase
2021	 63.17	0	2053922..2056063	+	713	119384778	-	Pden_2046	-	TonB-dependent receptor
2022	 68.62	0	2056156..2057076	+	306	119384779	-	Pden_2047	-	arginase
2023	 63.91	0	2057392..2057754	-	120	119384780	-	Pden_2048	-	hypothetical protein
2024	 63.68	0	2057841..2058308	-	155	119384781	-	Pden_2049	-	hypothetical protein
2025	 62.67	0	2059246..2059770	-	174	119384782	-	Pden_2050	-	hypothetical protein
2026	 62.37	-1	2059763..2060041	-	92	119384783	-	Pden_2051	-	hypothetical protein
2027	 63.33	0	2060592..2060891	+	99	119384784	-	Pden_2052	-	hypothetical protein
2028	 63.47	0	2060891..2061109	+	72	119384785	-	Pden_2053	-	hypothetical protein
2029	 55.30	-2	2061405..2062328	+	307	119384786	-	Pden_2054	-	hypothetical protein
2030	 67.64	0	2063243..2063758	+	171	119384787	-	Pden_2055	-	hypothetical protein
2031	 66.81	0	2063766..2065175	-	469	119384788	-	Pden_2056	-	hypothetical protein
2032	 63.68	0	2065343..2065744	+	133	119384789	-	Pden_2057	-	hypothetical protein
2033	 67.44	0	2065737..2066510	-	257	119384790	-	Pden_2058	-	hypothetical protein
2034	 61.29	-1	2066523..2066894	-	123	119384791	-	Pden_2059	-	IS5 family transposase OrfA
2035	 53.64	-2	2067123..2067452	+	109	119384792	-	Pden_2060	-	HNH endonuclease
2036	 62.83	0	2067435..2068970	-	511	119384793	-	Pden_2061	-	DNA-cytosine methyltransferase
2037	 63.23	0	2069038..2069502	+	154	119384794	-	Pden_2062	-	DNA mismatch endonuclease vsr
2038	 66.46	0	2069678..2070169	-	163	119384795	-	Pden_2063	-	phage terminase large subunit
2039	 67.73	0	2070153..2070623	-	156	119384796	-	Pden_2064	-	P27 family phage terminase small subunit
2040	 58.45	-1	2070830..2071036	+	68	119384797	-	Pden_2065	-	cold-shock DNA-binding domain-containing protein
2041	 59.15	-1	2071116..2071421	+	101	119384798	-	Pden_2066	-	hypothetical protein
2042	 60.89	-1	2071691..2071915	-	74	119384799	-	Pden_2067	-	hypothetical protein
2043	 67.03	0	2071912..2073303	-	463	119384800	-	Pden_2068	-	nuclease
2044	 68.43	0	2073402..2073797	-	131	119384801	-	Pden_2069	-	HNH endonuclease
2045	 70.37	0	2073885..2074262	-	125	119384802	-	Pden_2070	-	hypothetical protein
2046	 63.80	0	2074255..2074743	-	162	119384803	-	Pden_2071	-	hypothetical protein
2047	 67.27	0	2074747..2076405	-	552	119384804	-	Pden_2072	-	hypothetical protein
2048	 62.19	-1	2076402..2076602	-	66	119384805	-	Pden_2073	-	hypothetical protein
2049	 69.58	0	2076726..2076965	+	79	119384806	-	Pden_2074	-	putative plasmid stability protein
2050	 65.52	0	2076962..2077396	+	144	119384807	-	Pden_2075	-	PilT domain-containing protein
2051	 64.85	0	2077384..2078100	-	238	119384808	-	Pden_2076	-	ECF subfamily RNA polymerase sigma-24 factor
66.57	MEAN

4.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.