version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1826 62.43 0 1845513..1845701 - 62 119384583 - Pden_1846 - Cbb3-type cytochrome oxidase component 1827 62.67 0 1845710..1846435 - 241 119384584 - Pden_1847 - cytochrome c oxidase, cbb3-type, subunit II 1828 62.84 0 1846445..1848064 - 539 119384585 - Pden_1848 - cytochrome c oxidase, cbb3-type, subunit I 1829 67.75 0 1848315..1849148 + 277 119384586 - Pden_1849 - UspA domain-containing protein 1830 67.77 0 1849236..1849871 - 211 119384587 - Pden_1850 - CRP/FNR family transcriptional regulator 1831 68.88 0 1850034..1851389 + 451 119384588 - Pden_1851 - coproporphyrinogen III oxidase 1832 69.34 0 1851392..1852327 - 311 119384589 - Pden_1852 - cation diffusion facilitator family transporter 1833 67.34 0 1852399..1855221 - 940 119384590 - Pden_1853 - DNA polymerase I 1834 67.72 0 1855405..1855593 - 62 119384591 - Pden_1854 - hypothetical protein 1835 68.33 0 1855663..1856622 + 319 119384592 - Pden_1855 - ABC transporter related 1836 66.13 0 1856610..1856984 - 124 119384593 - Pden_1856 - histidine triad (HIT) protein 1837 64.40 0 1856995..1858584 - 529 119384594 - Pden_1857 - glycosyl transferase family protein 1838 60.81 -1 1858734..1859552 + 272 119384595 - Pden_1858 - hypothetical protein 1839 66.67 0 1859826..1860032 + 68 119384596 rpmF Pden_1859 - 50S ribosomal protein L32 1840 68.37 0 1860050..1861162 + 370 119384597 - Pden_1860 - putative glycerol-3-phosphate acyltransferase PlsX 1841 70.06 0 1861162..1862133 + 323 119384598 - Pden_1861 - 3-oxoacyl-(acyl-carrier-protein) synthase III 1842 70.29 0 1862142..1862417 - 91 119384599 - Pden_1862 - hypothetical protein 1843 65.37 0 1862630..1862938 + 102 119384600 - Pden_1863 - integration host factor, alpha subunit 1844 72.61 +1 1862938..1863543 + 201 119384601 - Pden_1864 - MerR family transcriptional regulator 1845 68.60 0 1863788..1864873 + 361 119384602 - Pden_1865 - 2'-deoxycytidine 5'-triphosphate deaminase 1846 70.72 0 1865120..1865785 - 221 119384603 - Pden_1866 - putative transcriptional regulator 1847 71.11 +1 1865782..1866636 - 284 119384604 - Pden_1867 - chromosome segregation and condensation protein ScpA 1848 72.54 +1 1866682..1867668 - 328 119384605 - Pden_1868 - Beta-N-acetylhexosaminidase 1849 72.39 +1 1867678..1868847 - 389 119384606 - Pden_1869 - sporulation domain-containing protein 1850 66.95 0 1868916..1870661 - 581 119384607 - Pden_1870 - arginyl-tRNA synthetase 1851 67.01 0 1874653..1875819 + 388 119384608 - Pden_1873 - S-adenosylmethionine synthetase 1852 64.91 0 1875928..1876554 - 208 119384609 - Pden_1874 - heat shock protein DnaJ domain-containing protein 1853 64.29 0 1876624..1876875 + 83 119384610 - Pden_1875 - BolA family protein 1854 68.32 0 1876957..1877922 + 321 119384611 glpX Pden_1876 - fructose 1,6-bisphosphatase II 1855 72.81 +1 1877974..1879716 + 580 119384612 - Pden_1877 - single-stranded-DNA-specific exonuclease RecJ 1856 66.98 0 1880002..1880325 + 107 119384613 - Pden_1878 - hypothetical protein 1857 66.76 0 1880355..1883687 - 1110 119384614 carB Pden_1879 - carbamoyl phosphate synthase large subunit 1858 60.00 -1 1883878..1884402 - 174 119384615 - Pden_1880 - hypothetical protein 1859 70.52 0 1884716..1885078 - 120 119384616 - Pden_1881 - hypothetical protein 1860 73.90 +1 1885082..1885717 - 211 119384617 - Pden_1882 - hypothetical protein 1861 67.86 0 1885895..1886482 + 195 119384618 hisB Pden_1883 - imidazoleglycerol-phosphate dehydratase 1862 69.21 0 1886482..1887111 + 209 119384619 hisH Pden_1884 - imidazole glycerol phosphate synthase subunit HisH 1863 62.79 0 1887211..1887597 - 128 119384620 - Pden_1885 - hypothetical protein 1864 71.27 +1 1887757..1888473 + 238 119384621 - Pden_1886 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1865 69.55 0 1888501..1889262 + 253 119384622 - Pden_1887 - imidazole glycerol phosphate synthase subunit HisF 1866 64.83 0 1889259..1889585 + 108 119384623 hisE Pden_1888 - phosphoribosyl-ATP pyrophosphatase 1867 69.66 0 1889590..1890090 + 166 119384624 - Pden_1889 - MgtC/SapB transporter 1868 68.99 0 1890087..1891292 - 401 119384625 - Pden_1890 - ribonuclease D 1869 67.72 0 1891381..1892523 - 380 119384626 - Pden_1891 - queuine tRNA-ribosyltransferase 1870 66.40 0 1892555..1893310 - 251 119384627 - Pden_1892 - putative hemolysin 1871 66.67 0 1893409..1893801 + 130 119384628 - Pden_1893 - methionine-R-sulfoxide reductase 1872 67.54 0 1893837..1894292 - 151 119384629 - Pden_1894 - hypothetical protein 1873 70.45 0 1894407..1894934 + 175 119384630 - Pden_1895 - hypothetical protein 1874 66.79 0 1894936..1896588 - 550 119384631 - Pden_1896 - choline dehydrogenase 1875 70.26 0 1896670..1898115 - 481 119384632 - Pden_1897 - betaine aldehyde dehydrogenase 1876 69.30 0 1898112..1898681 - 189 119384633 - Pden_1898 - transcriptional regulator BetI 1877 66.35 0 1898812..1899765 + 317 119384634 - Pden_1899 - substrate-binding region of ABC-type glycine betaine transport system 1878 65.26 0 1899930..1900781 + 283 119384635 - Pden_1900 - binding-protein-dependent transport systems inner membrane component 1879 68.18 0 1900774..1901832 + 352 119384636 - Pden_1901 - ABC transporter related 1880 70.55 0 1901854..1902780 - 308 119384637 - Pden_1902 - hypothetical protein 1881 70.83 +1 1902808..1903407 - 199 119384638 - Pden_1903 - lysine exporter protein LysE/YggA 1882 72.07 +1 1903489..1904358 + 289 119384639 - Pden_1904 - chromosome replication initiation inhibitor protein 1883 61.27 -1 1904398..1905138 - 246 119384640 - Pden_1905 - hypothetical protein 1884 70.65 0 1905203..1905478 - 91 119384641 - Pden_1906 - hypothetical protein 1885 68.10 0 1905465..1905674 - 69 119384642 - Pden_1907 - hypothetical protein 1886 65.16 0 1905677..1907074 - 465 119384643 fumC Pden_1908 - fumarate hydratase 1887 62.12 -1 1907167..1907628 - 153 119384644 - Pden_1909 - hypothetical protein 1888 63.03 0 1908117..1908446 - 109 119384645 - Pden_1911 - hypothetical protein 1889 74.50 +1 1909112..1910221 - 369 119384646 anmK Pden_1912 - anhydro-N-acetylmuramic acid kinase 1890 64.10 0 1910277..1911521 + 414 119384647 - Pden_1913 - tyrosyl-tRNA synthetase 1891 64.43 0 1911566..1912147 - 193 119384648 - Pden_1914 - hypothetical protein 1892 73.03 +1 1912182..1912637 - 151 119384649 - Pden_1915 - hypothetical protein 1893 67.17 0 1912702..1913295 - 197 119384650 - Pden_1916 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 1894 64.31 0 1913285..1913794 - 169 119384651 - Pden_1917 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 1895 68.25 0 1913972..1915168 + 398 119384652 pgk Pden_1918 - phosphoglycerate kinase 1896 64.35 0 1915409..1915624 - 71 119384653 - Pden_1919 - hypothetical protein 1897 65.91 0 1915751..1916680 + 309 119384654 - Pden_1920 - fructose-bisphosphate aldolase 1898 68.11 0 1916810..1917850 + 346 119384655 - Pden_1921 - signal recognition particle-docking protein FtsY 1899 65.85 0 1917907..1918275 - 122 119384656 - Pden_1922 - hypothetical protein 1900 68.88 0 1918330..1919007 - 225 119384657 hisG Pden_1923 - ATP phosphoribosyltransferase catalytic subunit 1901 70.08 0 1919004..1920086 - 360 119384658 hisZ Pden_1924 - ATP phosphoribosyltransferase regulatory subunit 1902 68.42 0 1920083..1921567 - 494 119384659 hisS Pden_1925 - histidyl-tRNA synthetase 1903 68.06 0 1921616..1921831 + 71 119384660 - Pden_1926 - hypothetical protein 1904 73.17 +1 1921901..1922392 - 163 119384661 - Pden_1927 - hypothetical protein 1905 65.29 0 1922493..1923002 - 169 119384662 - Pden_1928 - cell wall hydrolase, SleB 1906 65.74 0 1923126..1924640 - 504 119384663 gatB Pden_1929 - aspartyl/glutamyl-tRNA amidotransferase subunit B 1907 73.72 +1 1925055..1928345 - 1096 119384664 - Pden_1931 - hypothetical protein 1908 71.04 +1 1928360..1929205 + 281 119384665 - Pden_1932 - hypothetical protein 1909 65.81 0 1929274..1930560 - 428 119384666 - Pden_1933 - O-acetylhomoserine/O-acetylserine sulfhydrylase 1910 65.35 0 1930887..1931267 - 126 119384667 - Pden_1934 - translation initiation factor 2, gamma subunit, GTPase 1911 66.29 0 1931703..1935455 - 1250 119384668 metH Pden_1935 - B12-dependent methionine synthase 1912 69.10 0 1935600..1936256 + 218 119384669 lipB Pden_1936 - lipoyltransferase 1913 63.46 0 1936399..1936866 + 155 119384670 - Pden_1937 - cytochrome c, class I 1914 62.25 -1 1937038..1938714 + 558 119384671 - Pden_1938 - cytochrome-c oxidase 1915 68.69 0 1938734..1939228 + 164 119384672 - Pden_1939 - hypothetical protein 1916 66.31 0 1939823..1942315 - 830 119384673 - Pden_1940 - FAD dependent oxidoreductase 1917 68.05 0 1942478..1943488 - 336 119384674 - Pden_1941 - glyoxylate reductase 1918 69.98 0 1943580..1944182 + 200 119384675 - Pden_1942 - hypothetical protein 1919 61.54 -1 1944200..1945057 - 285 119384676 - Pden_1943 - hypothetical protein 1920 68.19 0 1945211..1947247 - 678 119384677 - Pden_1944 - peptidyl-dipeptidase Dcp 1921 71.79 +1 1947281..1948333 - 350 119384678 - Pden_1945 - UBA/THIF-type NAD/FAD binding protein 1922 71.21 +1 1948338..1948799 - 153 119384679 - Pden_1946 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 1923 65.41 0 1950168..1951043 + 291 119384680 - Pden_1948 - hypothetical protein 1924 69.61 0 1951059..1952348 - 429 119384681 - Pden_1949 - putative L-sorbosone dehydrogenase 1925 68.79 0 1952489..1954090 - 533 119384682 pgi Pden_1950 - glucose-6-phosphate isomerase 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0