IslandPathversion 1.0

IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.57 STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
113	 53.67	-2	105698..106597	-	299	119382870	-	Pden_0113	-	TIR protein
114	 61.65	-1	106933..107211	-	92	119382871	-	Pden_0114	-	SH3 type 3 domain-containing protein
115	 62.68	0	107337..108014	-	225	119382872	-	Pden_0115	-	yecA family protein
116	 63.84	0	108141..108776	-	211	119382873	-	Pden_0116	-	hexapaptide repeat-containing transferase
117	 65.27	0	109037..109393	+	118	119382874	-	Pden_0117	-	hypothetical protein
118	 62.71	0	109402..109755	+	117	119382875	-	Pden_0118	-	hypothetical protein
119	 64.27	0	109994..110410	+	138	119382876	-	Pden_0119	-	hypothetical protein
120	 65.93	0	110943..111620	+	225	119382877	-	Pden_0120	-	DNA methylase N-4/N-6 domain-containing protein
121	 69.42	0	111692..111982	+	96	119382878	-	Pden_0121	-	hypothetical protein
122	 60.61	-1	112280..112741	+	153	119382879	-	Pden_0122	-	hypothetical protein
123	 65.21	0	113488..113898	+	136	119382880	-	Pden_0123	-	single-strand binding protein
124	 66.67	0	113876..114208	+	110	119382881	-	Pden_0124	-	hypothetical protein
125	 64.71	0	114444..114647	+	67	119382882	-	Pden_0125	-	hypothetical protein
126	 63.38	0	115048..115260	+	70	119382883	-	Pden_0126	-	hypothetical protein
127	 69.11	0	115281..115730	-	149	119382884	-	Pden_0127	-	hypothetical protein
128	 66.29	0	115825..116091	-	88	119382885	-	Pden_0128	-	hypothetical protein
129	 68.56	0	116238..116501	-	87	119382886	-	Pden_0129	-	hypothetical protein
130	 63.71	0	116687..116923	-	78	119382887	-	Pden_0130	-	XRE family transcriptional regulator
131	 67.41	0	117115..117384	+	89	119382888	-	Pden_0131	-	hypothetical protein
132	 67.36	0	117381..118250	+	289	119382889	-	Pden_0132	-	putative replication protein A
133	 68.06	0	118506..119006	+	166	119382890	-	Pden_0133	-	hypothetical protein
134	 61.85	-1	119003..120622	+	539	119382891	-	Pden_0134	-	transposase IS116/IS110/IS902 family protein
135	 69.73	0	121111..121665	+	184	119382892	-	Pden_0135	-	hypothetical protein
136	 68.06	0	121919..122851	+	310	119382893	-	Pden_0136	-	hypothetical protein
137	 69.40	0	122855..123550	+	231	119382894	-	Pden_0137	-	lytic transglycosylase, catalytic
138	 68.73	0	123600..124181	+	193	119382895	-	Pden_0138	-	hypothetical protein
139	 68.85	0	124423..126159	+	578	119382896	-	Pden_0139	-	hypothetical protein
140	 66.67	0	126242..126493	+	83	119382897	-	Pden_0140	-	prevent-host-death family protein
141	 67.23	0	126578..126934	+	118	119382898	-	Pden_0141	-	PilT protein-like
142	 66.47	0	127107..129131	+	674	119382899	-	Pden_0142	-	TRAG family protein
143	 68.86	0	129135..129545	+	136	119382900	-	Pden_0143	-	hypothetical protein
144	 68.93	0	129586..129894	-	102	119382901	-	Pden_0144	-	plasmid stabilization system protein
145	 64.44	0	129891..130160	-	89	119382902	-	Pden_0145	-	CopG family transcriptional regulator
146	 62.55	0	130357..130599	-	80	119382903	-	Pden_0146	-	hypothetical protein
147	 71.17	+1	130604..131779	-	391	119382904	-	Pden_0147	-	conjugation TrbI family protein
148	 67.46	0	131779..132783	-	334	119382905	-	Pden_0148	-	conjugal transfer protein TrbG/VirB9/CagX
149	 65.51	0	132780..133469	-	229	119382906	-	Pden_0149	-	conjugal transfer protein
150	 68.18	0	133466..134785	-	439	119382907	-	Pden_0150	-	TrbL/VirB6 plasmid conjugal transfer protein
151	 69.44	0	134793..135080	-	95	119382908	-	Pden_0151	-	hypothetical protein
152	 66.79	0	135101..135901	-	266	119382909	-	Pden_0152	-	conjugal transfer protein TrbJ
153	 66.06	0	135898..138516	-	872	119382910	-	Pden_0153	-	AAA ATPase
154	 70.92	+1	138528..138809	-	93	119382911	-	Pden_0154	-	conjugal transfer protein TrbB
155	 63.94	0	138809..139138	-	109	119382912	-	Pden_0155	-	conjugal transfer protein TrbC
156	 68.86	0	139135..140139	-	334	119382913	-	Pden_0156	-	type II secretion system protein E
157	 63.63	0	140328..141215	-	295	119382914	-	Pden_0157	-	LysR family transcriptional regulator
158	 55.41	-2	141246..141467	-	73	119382915	-	Pden_0158	-	hypothetical protein
159	 57.76	-2	141627..141974	-	115	119382916	-	Pden_0159	-	hypothetical protein
160	 67.41	0	142033..145134	-	1033	119382917	-	Pden_0160	-	acriflavin resistance protein
161	 71.30	+1	145138..146280	-	380	119382918	-	Pden_0161	-	RND family efflux transporter MFP subunit
162	 65.49	0	146505..147182	-	225	119382919	-	Pden_0162	-	MltA-interacting MipA family protein
163	 57.30	-2	147265..147627	+	120	119382920	-	Pden_0163	-	hypothetical protein
164	 64.11	0	147614..148240	+	208	119382921	-	Pden_0164	-	TetR family transcriptional regulator
165	 67.84	0	148664..149005	-	113	119382922	-	Pden_0166	-	regulatory protein, ArsR
166	 68.21	0	149251..150348	+	365	119382923	-	Pden_0167	-	cupin 2 domain-containing protein
167	 71.34	+1	150370..151140	+	256	119382924	-	Pden_0168	-	hypothetical protein
168	 69.57	0	151137..151964	-	275	119382925	-	Pden_0169	-	regulatory proteins, IclR
169	 64.18	0	151979..152380	-	133	119382926	-	Pden_0170	-	thioesterase superfamily protein
170	 64.83	0	152463..153608	+	381	119382927	-	Pden_0171	-	monooxygenase, FAD-binding
171	 68.41	0	153619..155283	+	554	119382928	-	Pden_0172	-	benzoate-CoA ligase family
172	 68.64	0	155383..156093	+	236	119382929	-	Pden_0173	-	fumarylacetoacetate (FAA) hydrolase
173	 66.51	0	156090..156743	+	217	119382930	-	Pden_0174	-	maleylacetoacetate isomerase
174	 64.55	0	156769..157950	+	393	119382931	-	Pden_0175	-	putative ABC transporter binding protein
175	 66.02	0	157992..158912	+	306	119382932	-	Pden_0176	-	inner-membrane translocator
176	 65.57	0	158917..159918	+	333	119382933	-	Pden_0177	-	inner-membrane translocator
177	 69.87	0	159915..160664	+	249	119382934	-	Pden_0178	-	ABC transporter related
178	 67.24	0	160664..161365	+	233	119382935	-	Pden_0179	-	ABC transporter related
179	 68.66	0	161423..162874	+	483	119382936	-	Pden_0180	-	aldehyde dehydrogenase
180	 69.29	0	162937..164652	+	571	119382937	-	Pden_0181	-	glucose-methanol-choline oxidoreductase
181	 63.44	0	164730..165875	+	381	119382938	-	Pden_0182	-	beta-lactamase-like protein
182	 68.97	0	165932..167233	-	433	119382939	-	Pden_0183	-	D-amino acid dehydrogenase small subunit
183	 66.38	0	167506..168204	-	232	119382940	-	Pden_0184	-	hypothetical protein
184	 65.58	0	168231..168968	-	245	119382941	-	Pden_0185	-	hypothetical protein
185	 66.41	0	169001..170164	-	387	119382942	-	Pden_0186	-	amidohydrolase
186	 60.52	-1	170313..170816	+	167	119382943	-	Pden_0187	-	MarR family transcriptional regulator
187	 65.07	0	170847..171662	-	271	119382944	-	Pden_0188	-	regulatory proteins, IclR
188	 65.76	0	171675..173552	-	625	119382945	-	Pden_0189	-	TRAP C4-dicarboxylate transport system permease DctM subunit
189	 61.77	-1	173552..174082	-	176	119382946	-	Pden_0190	-	tripartite ATP-independent periplasmic transporter DctQ
190	 57.49	-2	174180..174593	-	137	119382947	-	Pden_0191	-	glyoxalase/bleomycin resistance protein/dioxygenase
191	 69.52	0	174620..175390	-	256	119382948	-	Pden_0192	-	short-chain dehydrogenase/reductase SDR
192	 64.19	0	175536..176624	-	362	119382949	-	Pden_0193	-	TRAP dicarboxylate transporter- DctP subunit
193	 70.67	0	176899..177723	+	274	119382950	-	Pden_0194	-	hypothetical protein
194	 68.91	0	177720..178925	+	401	119382951	-	Pden_0195	-	L-carnitine dehydratase/bile acid-inducible protein F
195	 66.42	0	178909..179730	+	273	119382952	-	Pden_0196	-	short-chain dehydrogenase/reductase SDR
196	 71.31	+1	179751..181280	+	509	119382953	-	Pden_0197	-	3-hydroxybutyryl-CoA dehydrogenase
197	 67.44	0	181335..182495	-	386	119382954	-	Pden_0198	-	butyryl-CoA dehydrogenase
198	 72.99	+1	183912..185984	-	690	119382955	-	Pden_0201	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
199	 69.87	0	186326..186856	+	176	119382956	-	Pden_0202	-	flavin reductase domain-containing protein
200	 64.00	0	186916..188004	+	362	119382957	-	Pden_0203	-	luciferase family protein
201	 69.49	0	188036..188707	+	223	119382958	-	Pden_0204	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
202	 66.67	0	188774..189028	-	84	119382959	-	Pden_0205	-	hypothetical protein
203	 66.67	0	189154..189945	-	263	119382960	-	Pden_0206	-	short-chain dehydrogenase/reductase SDR
204	 64.56	0	190129..191124	-	331	119382961	-	Pden_0207	-	alpha/beta hydrolase fold
205	 58.89	-1	191172..191351	-	59	119382962	-	Pden_0208	-	4-oxalocrotonate tautomerase
206	 68.98	0	191454..192362	+	302	119382963	-	Pden_0209	-	LysR family transcriptional regulator
207	 63.38	0	192405..193013	-	202	119382964	-	Pden_0210	-	hypothetical protein
208	 64.54	0	193178..193600	-	140	119382965	-	Pden_0211	-	MerR family transcriptional regulator
209	 70.75	0	193651..195927	+	758	119382966	-	Pden_0212	-	heavy metal translocating P-type ATPase
210	 71.19	+1	195927..196523	+	198	119382967	-	Pden_0213	-	S-isoprenylcysteine methyltransferase-like protein
211	 65.55	0	196604..197680	-	358	119382968	-	Pden_0214	-	arsenical-resistance protein
212	 66.20	0	197709..198137	-	142	119382969	-	Pden_0215	-	arsenate reductase
66.57	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.