version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1540 68.52 0 1529178..1529771 - 197 119384297 - Pden_1557 - riboflavin synthase subunit alpha 1541 67.50 0 1530081..1531403 + 440 119384298 - Pden_1558 - capsule polysaccharide biosynthesis 1542 66.58 0 1531502..1532680 + 392 119384299 - Pden_1559 - polysaccharide export protein 1543 71.94 +1 1532685..1534676 + 663 119384300 - Pden_1560 - capsule polysaccharide biosynthesis 1544 74.34 +1 1534673..1535650 - 325 119384301 - Pden_1561 - riboflavin biosynthesis protein RibD 1545 63.66 0 1535665..1536129 - 154 119384302 - Pden_1562 - transcriptional regulator NrdR 1546 63.82 0 1536368..1537492 + 374 119384303 - Pden_1563 - TRAP dicarboxylate transporter- DctP subunit 1547 66.93 0 1537598..1539490 - 630 119384304 - Pden_1564 - TRAP dicarboxylate transporter, DctM subunit 1548 61.22 -1 1539487..1540110 - 207 119384305 - Pden_1565 - tripartite ATP-independent periplasmic transporter DctQ 1549 77.99 +2 1540248..1541015 - 255 119384306 - Pden_1566 - cobalamin 5'-phosphate synthase 1550 71.16 +1 1541008..1541964 - 318 119384307 - Pden_1567 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1551 71.54 +1 1541961..1542494 - 177 119384308 - Pden_1568 - adenosylcobinamide kinase 1552 62.18 -1 1542634..1544238 + 534 119384309 - Pden_1569 - extracellular solute-binding protein 1553 66.12 0 1544305..1545222 + 305 119384310 - Pden_1570 - binding-protein-dependent transport systems inner membrane component 1554 65.48 0 1545226..1546149 + 307 119384311 - Pden_1571 - binding-protein-dependent transport systems inner membrane component 1555 69.51 0 1546151..1547206 + 351 119384312 - Pden_1572 - oligopeptide/dipeptide ABC transporter, ATPase subunit 1556 67.55 0 1547203..1548216 + 337 119384313 - Pden_1573 - oligopeptide/dipeptide ABC transporter, ATPase subunit 1557 71.19 +1 1548274..1548759 + 161 119384314 - Pden_1574 - pyridoxamine 5'-phosphate oxidase-related, FMN-binding 1558 64.97 0 1548796..1551090 - 764 119384315 - Pden_1575 - hypothetical protein 1559 64.03 0 1551231..1552823 - 530 119384316 lysK Pden_1576 - lysyl-tRNA synthetase 1560 69.50 0 1552915..1553337 + 140 119384317 - Pden_1577 - hypothetical protein 1561 71.62 +1 1553348..1554802 - 484 119384318 - Pden_1578 - peptidase S13, D-Ala-D-Ala carboxypeptidase C 1562 70.81 +1 1554802..1555404 - 200 119384319 nadD Pden_1579 - nicotinic acid mononucleotide adenylyltransferase 1563 68.82 0 1555408..1557075 - 555 119384320 - Pden_1580 - formate--tetrahydrofolate ligase 1564 66.23 0 1557146..1558279 - 377 119384321 - Pden_1581 - hypothetical protein 1565 69.52 0 1558276..1560450 - 724 119384322 - Pden_1582 - glucosyltransferase MdoH 1566 66.79 0 1560447..1562045 - 532 119384323 mdoG Pden_1583 - glucan biosynthesis protein G 1567 72.82 +1 1562157..1563164 + 335 119384324 - Pden_1584 - hypothetical protein 1568 68.33 0 1563635..1564297 + 220 119384325 - Pden_1585 - two component transcriptional regulator 1569 73.01 +1 1564294..1565634 + 446 119384326 - Pden_1586 - integral membrane sensor signal transduction histidine kinase 1570 68.27 0 1565928..1566239 - 103 119384327 - Pden_1587 - ETC complex I subunit region 1571 65.23 0 1566388..1568613 + 741 119384328 - Pden_1588 - excinuclease ABC subunit B 1572 65.97 0 1568656..1568943 - 95 119384329 - Pden_1589 - hypothetical protein 1573 70.28 0 1569043..1569678 - 211 119384330 - Pden_1590 - cobyrinic acid a,c-diamide synthase 1574 64.51 0 1569781..1570104 - 107 119384331 - Pden_1591 - antibiotic biosynthesis monooxygenase 1575 68.48 0 1570289..1571338 + 349 119384332 - Pden_1592 - peptidase M19, renal dipeptidase 1576 67.83 0 1571549..1573090 - 513 119384333 - Pden_1593 - Ppx/GppA phosphatase 1577 63.75 0 1573159..1574460 - 433 119384334 - Pden_1594 - polyphosphate kinase 1578 68.56 0 1574589..1575380 + 263 119384335 - Pden_1595 - ABC transporter related 1579 69.43 0 1575380..1576246 + 288 119384336 - Pden_1596 - ABC-3 protein 1580 67.42 0 1576266..1577195 + 309 119384337 - Pden_1597 - periplasmic solute binding protein 1581 68.13 0 1577267..1578493 + 408 119384338 - Pden_1598 - hypothetical protein 1582 68.28 0 1578721..1579401 - 226 119384339 - Pden_1599 - glutathione S-transferase domain-containing protein 1583 65.38 0 1579401..1580333 - 310 119384340 - Pden_1600 - LysR family transcriptional regulator 1584 71.10 +1 1580445..1581911 - 488 119384341 - Pden_1601 - major facilitator transporter 1585 66.31 0 1581989..1583947 - 652 119384342 - Pden_1602 - TonB-dependent receptor, plug 1586 72.31 +1 1584109..1585242 - 377 119384343 - Pden_1603 - dihydrolipoyllysine-residue succinyltransferase 1587 71.09 +1 1585243..1587324 - 693 119384344 - Pden_1604 - transketolase, central region 1588 67.34 0 1587353..1587946 - 197 119384345 - Pden_1605 - flavoprotein 1589 60.57 -1 1587959..1588795 - 278 119384346 - Pden_1606 - methyltransferase type 12 1590 70.16 0 1588977..1590524 + 515 119384347 - Pden_1607 - dehydratase 1591 70.79 +1 1590526..1592076 + 516 119384348 - Pden_1608 - extracellular solute-binding protein 1592 71.97 +1 1592073..1593071 + 332 119384349 - Pden_1609 - binding-protein-dependent transport systems inner membrane component 1593 73.39 +1 1593071..1593844 + 257 119384350 - Pden_1610 - binding-protein-dependent transport systems inner membrane component 1594 72.52 +1 1593841..1595223 + 460 119384351 - Pden_1611 - ABC transporter related 1595 71.32 +1 1595224..1595760 - 178 119384352 - Pden_1612 - ChaC family protein 1596 70.73 0 1595760..1596941 - 393 119384353 - Pden_1613 - acyl-CoA dehydrogenase domain-containing protein 1597 59.56 -1 1596964..1597413 - 149 119384354 - Pden_1614 - thioesterase superfamily protein 1598 69.00 0 1597420..1598061 - 213 119384355 - Pden_1615 - hypothetical protein 1599 62.65 0 1599137..1599460 - 107 119384356 - Pden_1617 - transposase IS3/IS911 family protein 1600 45.41 -2 1599713..1600507 - 264 119384357 - Pden_1618 - flagellar protein, putative 1601 46.72 -2 1600823..1601188 - 121 119384358 - Pden_1619 - flagellar FlaF family protein 1602 52.40 -2 1601253..1602107 - 284 119384359 - Pden_1620 - flagellin domain-containing protein 1603 54.92 -2 1602260..1602574 - 104 119384360 - Pden_1621 - hypothetical protein 1604 47.82 -2 1602940..1604133 + 397 119384361 - Pden_1622 - hypothetical protein 1605 50.00 -2 1604147..1604812 + 221 119384362 flgD Pden_1623 - flagellar basal body rod modification protein 1606 67.47 0 1605044..1605415 + 123 119384363 - Pden_1624 - transposase IS3/IS911 family protein 1607 60.58 -1 1606371..1606682 - 103 119384364 - Pden_1626 - hypothetical protein 1608 67.18 0 1606847..1608202 - 451 119384365 - Pden_1627 - hypothetical protein 1609 64.76 0 1608270..1610312 - 680 119384366 - Pden_1628 - TonB-dependent receptor, plug 1610 66.67 0 1610564..1611091 + 175 119384367 - Pden_1629 - ECF subfamily RNA polymerase sigma-24 factor 1611 70.26 0 1611103..1612077 + 324 119384368 - Pden_1630 - putative FecR 1612 69.28 0 1612232..1614451 + 739 119384369 - Pden_1631 - TonB-dependent receptor, plug 1613 66.67 0 1614613..1614864 + 83 119384370 - Pden_1632 - hypothetical protein 1614 68.79 0 1614861..1615991 + 376 119384371 - Pden_1633 - carboxylate-amine ligase 1615 68.27 0 1616089..1616586 + 165 119384372 - Pden_1634 - superoxide dismutase, copper/zinc binding 1616 67.77 0 1616616..1617704 - 362 119384373 - Pden_1635 - signal transduction histidine kinase 1617 67.97 0 1617928..1618539 + 203 119384374 - Pden_1636 - isochorismatase hydrolase 1618 66.67 0 1618639..1618875 + 78 119384375 - Pden_1637 - hypothetical protein 1619 63.93 0 1619053..1619235 - 60 119384376 - Pden_1638 - hypothetical protein 1620 73.25 +1 1619984..1620940 - 318 119384377 - Pden_1640 - phosphate acetyltransferase 1621 72.27 +1 1620953..1621969 - 338 119384378 - Pden_1641 - hypothetical protein 1622 68.13 0 1622243..1624024 - 593 119384379 - Pden_1642 - sulfoacetaldehyde acetyltransferase 1623 70.33 0 1624037..1625428 - 463 119384380 - Pden_1643 - FAD dependent oxidoreductase 1624 66.43 0 1625437..1625856 - 139 119384381 - Pden_1644 - hypothetical protein 1625 65.70 0 1625871..1627211 - 446 119384382 - Pden_1645 - TRAP dicarboxylate transporter, DctM subunit 1626 60.43 -1 1627208..1627768 - 186 119384383 - Pden_1646 - tripartite ATP-independent periplasmic transporter DctQ 1627 63.01 0 1627853..1628863 - 336 119384384 - Pden_1647 - TRAP dicarboxylate transporter, DctP subunit 1628 69.42 0 1628978..1630465 + 495 119384385 - Pden_1648 - GntR family transcriptional regulator 1629 64.12 0 1630782..1631291 + 169 119384386 - Pden_1649 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 1630 65.28 0 1631313..1632542 + 409 119384387 - Pden_1650 - beta-ketoacyl synthase 1631 63.62 0 1632562..1633350 + 262 119384388 - Pden_1651 - short-chain dehydrogenase/reductase SDR 1632 68.36 0 1633350..1634177 + 275 119384389 - Pden_1652 - hydrolase or acyltransferase 1633 66.27 0 1634531..1635805 - 424 119384390 - Pden_1653 - lytic murein transglycosylase 1634 67.72 0 1635960..1637006 - 348 119384391 - Pden_1654 - lysine--tRNA ligase 1635 62.34 -1 1637085..1637708 + 207 119384392 - Pden_1655 - elongation factor P 1636 65.01 0 1638090..1639118 - 342 119384393 argC Pden_1656 - N-acetyl-gamma-glutamyl-phosphate reductase 1637 69.31 0 1639582..1640412 + 276 119384394 panB Pden_1657 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 1638 69.61 0 1640409..1641257 + 282 119384395 - Pden_1658 - pantoate--beta-alanine ligase 1639 73.12 +1 1641303..1642682 - 459 119384396 - Pden_1659 - integral membrane sensor signal transduction histidine kinase 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0