IslandPathversion 1.0

IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.57 STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1512	 62.27	-1	1499748..1500635	-	295	119384269	-	Pden_1529	-	hypothetical protein
1513	 64.58	0	1501056..1501295	+	79	119384270	-	Pden_1530	-	hypothetical protein
1514	 63.00	0	1501625..1502551	-	308	119384271	-	Pden_1531	-	hypothetical protein
1515	 64.54	0	1502908..1503942	-	344	119384272	-	Pden_1532	-	hypothetical protein
1516	 65.21	0	1503942..1508264	-	1440	119384273	-	Pden_1533	-	methylase/helicase
1517	 64.44	0	1508430..1510043	+	537	119384274	-	Pden_1534	-	filamentation induced by cAMP protein Fic
1518	 60.00	-1	1510055..1510699	-	214	119384275	-	Pden_1535	-	hypothetical protein
1519	 62.35	-1	1510692..1511108	-	138	119384276	-	Pden_1536	-	hypothetical protein
1520	 64.70	0	1511174..1511731	-	185	119384277	-	Pden_1537	-	hypothetical protein
1521	 65.12	0	1511923..1512180	-	85	119384278	-	Pden_1538	-	hypothetical protein
1522	 63.40	0	1512503..1512808	-	101	119384279	-	Pden_1539	-	hypothetical protein
1523	 61.46	-1	1512910..1515234	-	774	119384280	-	Pden_1540	-	hypothetical protein
1524	 66.10	0	1515718..1517844	-	708	119384281	-	Pden_1541	-	parB-like partition proteins
1525	 63.19	0	1517961..1518449	-	162	119384282	-	Pden_1542	-	DNA repair protein RadC
1526	 62.88	0	1518561..1518956	-	131	119384283	-	Pden_1543	-	hypothetical protein
1527	 66.04	0	1518953..1519915	-	320	119384284	-	Pden_1544	-	hypothetical protein
1528	 60.06	-1	1520277..1520594	+	105	119384285	-	Pden_1545	-	histone family protein nucleoid-structuring protein H-NS
1529	 63.27	0	1520610..1521227	+	205	119384286	-	Pden_1546	-	ORF-3 family protein
1530	 66.67	0	1521563..1521871	+	102	119384287	-	Pden_1547	-	XRE family transcriptional regulator
1531	 65.62	0	1521861..1523102	+	413	119384288	-	Pden_1548	-	HipA domain-containing protein
1532	 66.67	0	1523662..1523889	+	75	119384289	-	Pden_1549	-	hypothetical protein
1533	 69.60	0	1523870..1524346	-	158	119384290	-	Pden_1550	-	hypothetical protein
1534	 62.32	-1	1524673..1525593	-	306	119384291	-	Pden_1551	-	hypothetical protein
1535	 69.93	0	1526019..1526324	-	101	119384292	-	Pden_1552	-	hypothetical protein
1536	 68.66	0	1526439..1526939	-	166	119384293	-	Pden_1553	-	NusB antitermination factor
1537	 71.20	+1	1526936..1527487	-	183	119384294	-	Pden_1554	-	6,7-dimethyl-8-ribityllumazine synthase
1538	 68.36	0	1527492..1528610	-	372	119384295	-	Pden_1555	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1539	 71.50	+1	1528600..1529178	-	192	119384296	-	Pden_1556	-	hypothetical protein
1540	 68.52	0	1529178..1529771	-	197	119384297	-	Pden_1557	-	riboflavin synthase subunit alpha
1541	 67.50	0	1530081..1531403	+	440	119384298	-	Pden_1558	-	capsule polysaccharide biosynthesis
1542	 66.58	0	1531502..1532680	+	392	119384299	-	Pden_1559	-	polysaccharide export protein
1543	 71.94	+1	1532685..1534676	+	663	119384300	-	Pden_1560	-	capsule polysaccharide biosynthesis
1544	 74.34	+1	1534673..1535650	-	325	119384301	-	Pden_1561	-	riboflavin biosynthesis protein RibD
1545	 63.66	0	1535665..1536129	-	154	119384302	-	Pden_1562	-	transcriptional regulator NrdR
1546	 63.82	0	1536368..1537492	+	374	119384303	-	Pden_1563	-	TRAP dicarboxylate transporter- DctP subunit
1547	 66.93	0	1537598..1539490	-	630	119384304	-	Pden_1564	-	TRAP dicarboxylate transporter, DctM subunit
1548	 61.22	-1	1539487..1540110	-	207	119384305	-	Pden_1565	-	tripartite ATP-independent periplasmic transporter DctQ
1549	 77.99	+2	1540248..1541015	-	255	119384306	-	Pden_1566	-	cobalamin 5'-phosphate synthase
1550	 71.16	+1	1541008..1541964	-	318	119384307	-	Pden_1567	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1551	 71.54	+1	1541961..1542494	-	177	119384308	-	Pden_1568	-	adenosylcobinamide kinase
1552	 62.18	-1	1542634..1544238	+	534	119384309	-	Pden_1569	-	extracellular solute-binding protein
1553	 66.12	0	1544305..1545222	+	305	119384310	-	Pden_1570	-	binding-protein-dependent transport systems inner membrane component
1554	 65.48	0	1545226..1546149	+	307	119384311	-	Pden_1571	-	binding-protein-dependent transport systems inner membrane component
1555	 69.51	0	1546151..1547206	+	351	119384312	-	Pden_1572	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1556	 67.55	0	1547203..1548216	+	337	119384313	-	Pden_1573	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1557	 71.19	+1	1548274..1548759	+	161	119384314	-	Pden_1574	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1558	 64.97	0	1548796..1551090	-	764	119384315	-	Pden_1575	-	hypothetical protein
1559	 64.03	0	1551231..1552823	-	530	119384316	lysK	Pden_1576	-	lysyl-tRNA synthetase
1560	 69.50	0	1552915..1553337	+	140	119384317	-	Pden_1577	-	hypothetical protein
1561	 71.62	+1	1553348..1554802	-	484	119384318	-	Pden_1578	-	peptidase S13, D-Ala-D-Ala carboxypeptidase C
1562	 70.81	+1	1554802..1555404	-	200	119384319	nadD	Pden_1579	-	nicotinic acid mononucleotide adenylyltransferase
1563	 68.82	0	1555408..1557075	-	555	119384320	-	Pden_1580	-	formate--tetrahydrofolate ligase
1564	 66.23	0	1557146..1558279	-	377	119384321	-	Pden_1581	-	hypothetical protein
1565	 69.52	0	1558276..1560450	-	724	119384322	-	Pden_1582	-	glucosyltransferase MdoH
1566	 66.79	0	1560447..1562045	-	532	119384323	mdoG	Pden_1583	-	glucan biosynthesis protein G
1567	 72.82	+1	1562157..1563164	+	335	119384324	-	Pden_1584	-	hypothetical protein
1568	 68.33	0	1563635..1564297	+	220	119384325	-	Pden_1585	-	two component transcriptional regulator
1569	 73.01	+1	1564294..1565634	+	446	119384326	-	Pden_1586	-	integral membrane sensor signal transduction histidine kinase
1570	 68.27	0	1565928..1566239	-	103	119384327	-	Pden_1587	-	ETC complex I subunit region
1571	 65.23	0	1566388..1568613	+	741	119384328	-	Pden_1588	-	excinuclease ABC subunit B
1572	 65.97	0	1568656..1568943	-	95	119384329	-	Pden_1589	-	hypothetical protein
1573	 70.28	0	1569043..1569678	-	211	119384330	-	Pden_1590	-	cobyrinic acid a,c-diamide synthase
1574	 64.51	0	1569781..1570104	-	107	119384331	-	Pden_1591	-	antibiotic biosynthesis monooxygenase
1575	 68.48	0	1570289..1571338	+	349	119384332	-	Pden_1592	-	peptidase M19, renal dipeptidase
1576	 67.83	0	1571549..1573090	-	513	119384333	-	Pden_1593	-	Ppx/GppA phosphatase
1577	 63.75	0	1573159..1574460	-	433	119384334	-	Pden_1594	-	polyphosphate kinase
1578	 68.56	0	1574589..1575380	+	263	119384335	-	Pden_1595	-	ABC transporter related
1579	 69.43	0	1575380..1576246	+	288	119384336	-	Pden_1596	-	ABC-3 protein
1580	 67.42	0	1576266..1577195	+	309	119384337	-	Pden_1597	-	periplasmic solute binding protein
1581	 68.13	0	1577267..1578493	+	408	119384338	-	Pden_1598	-	hypothetical protein
1582	 68.28	0	1578721..1579401	-	226	119384339	-	Pden_1599	-	glutathione S-transferase domain-containing protein
1583	 65.38	0	1579401..1580333	-	310	119384340	-	Pden_1600	-	LysR family transcriptional regulator
1584	 71.10	+1	1580445..1581911	-	488	119384341	-	Pden_1601	-	major facilitator transporter
1585	 66.31	0	1581989..1583947	-	652	119384342	-	Pden_1602	-	TonB-dependent receptor, plug
1586	 72.31	+1	1584109..1585242	-	377	119384343	-	Pden_1603	-	dihydrolipoyllysine-residue succinyltransferase
1587	 71.09	+1	1585243..1587324	-	693	119384344	-	Pden_1604	-	transketolase, central region
1588	 67.34	0	1587353..1587946	-	197	119384345	-	Pden_1605	-	flavoprotein
1589	 60.57	-1	1587959..1588795	-	278	119384346	-	Pden_1606	-	methyltransferase type 12
1590	 70.16	0	1588977..1590524	+	515	119384347	-	Pden_1607	-	dehydratase
1591	 70.79	+1	1590526..1592076	+	516	119384348	-	Pden_1608	-	extracellular solute-binding protein
1592	 71.97	+1	1592073..1593071	+	332	119384349	-	Pden_1609	-	binding-protein-dependent transport systems inner membrane component
1593	 73.39	+1	1593071..1593844	+	257	119384350	-	Pden_1610	-	binding-protein-dependent transport systems inner membrane component
1594	 72.52	+1	1593841..1595223	+	460	119384351	-	Pden_1611	-	ABC transporter related
1595	 71.32	+1	1595224..1595760	-	178	119384352	-	Pden_1612	-	ChaC family protein
1596	 70.73	0	1595760..1596941	-	393	119384353	-	Pden_1613	-	acyl-CoA dehydrogenase domain-containing protein
1597	 59.56	-1	1596964..1597413	-	149	119384354	-	Pden_1614	-	thioesterase superfamily protein
1598	 69.00	0	1597420..1598061	-	213	119384355	-	Pden_1615	-	hypothetical protein
1599	 62.65	0	1599137..1599460	-	107	119384356	-	Pden_1617	-	transposase IS3/IS911 family protein
1600	 45.41	-2	1599713..1600507	-	264	119384357	-	Pden_1618	-	flagellar protein, putative
1601	 46.72	-2	1600823..1601188	-	121	119384358	-	Pden_1619	-	flagellar FlaF family protein
1602	 52.40	-2	1601253..1602107	-	284	119384359	-	Pden_1620	-	flagellin domain-containing protein
1603	 54.92	-2	1602260..1602574	-	104	119384360	-	Pden_1621	-	hypothetical protein
1604	 47.82	-2	1602940..1604133	+	397	119384361	-	Pden_1622	-	hypothetical protein
1605	 50.00	-2	1604147..1604812	+	221	119384362	flgD	Pden_1623	-	flagellar basal body rod modification protein
1606	 67.47	0	1605044..1605415	+	123	119384363	-	Pden_1624	-	transposase IS3/IS911 family protein
1607	 60.58	-1	1606371..1606682	-	103	119384364	-	Pden_1626	-	hypothetical protein
1608	 67.18	0	1606847..1608202	-	451	119384365	-	Pden_1627	-	hypothetical protein
1609	 64.76	0	1608270..1610312	-	680	119384366	-	Pden_1628	-	TonB-dependent receptor, plug
1610	 66.67	0	1610564..1611091	+	175	119384367	-	Pden_1629	-	ECF subfamily RNA polymerase sigma-24 factor
1611	 70.26	0	1611103..1612077	+	324	119384368	-	Pden_1630	-	putative FecR
66.57	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.