IslandPathversion 1.0

IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.57 STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1259	 66.37	0	1229999..1231351	-	450	119384016	-	Pden_1271	-	acetyl-CoA carboxylase biotin carboxylase subunit
1260	 67.82	0	1231359..1231880	-	173	119384017	-	Pden_1272	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
1261	 70.37	0	1231984..1232874	-	296	119384018	-	Pden_1273	-	lipid A biosynthesis acyltransferase
1262	 68.50	0	1232900..1233826	-	308	119384019	-	Pden_1274	-	hypothetical protein
1263	 69.94	0	1234011..1236029	-	672	119384020	-	Pden_1275	-	transketolase
1264	 71.20	+1	1236124..1238088	+	654	119384021	-	Pden_1276	-	hypothetical protein
1265	 66.26	0	1238179..1239669	+	496	119384022	-	Pden_1277	-	uracil-xanthine permease
1266	 69.18	0	1239663..1241015	-	450	119384023	-	Pden_1278	-	hypothetical protein
1267	 72.53	+1	1241012..1241983	-	323	119384024	-	Pden_1279	-	phage integrase family protein
1268	 74.18	+1	1241980..1243602	-	540	119384025	-	Pden_1280	-	hypothetical protein
1269	 67.83	0	1243589..1243846	-	85	119384026	-	Pden_1281	-	hypothetical protein
1270	 70.95	+1	1243974..1244510	+	178	119384027	-	Pden_1282	-	shikimate kinase
1271	 69.47	0	1244507..1245610	+	367	119384028	-	Pden_1283	-	3-dehydroquinate synthase
1272	 66.90	0	1245607..1246029	-	140	119384029	-	Pden_1284	-	monovalent cation/proton antiporter, MnhG/PhaG subunit
1273	 63.48	0	1246026..1246307	-	93	119384030	-	Pden_1285	-	putative monovalent cation/H+ antiporter subunit F
1274	 65.44	0	1246304..1246792	-	162	119384031	-	Pden_1286	-	cation antiporter
1275	 68.17	0	1246789..1248519	-	576	119384032	-	Pden_1287	-	putative monovalent cation/H+ antiporter subunit D
1276	 65.22	0	1248519..1248863	-	114	119384033	-	Pden_1288	-	putative monovalent cation/H+ antiporter subunit C
1277	 67.15	0	1248863..1251742	-	959	119384034	-	Pden_1289	-	putative monovalent cation/H+ antiporter subunit A
1278	 70.20	0	1251889..1253133	-	414	119384035	-	Pden_1290	-	Orn/DAP/Arg decarboxylase 2
1279	 59.92	-1	1253114..1253350	-	78	119384036	-	Pden_1291	-	hypothetical protein
1280	 68.00	0	1253370..1254941	-	523	119384037	-	Pden_1292	-	AMP-dependent synthetase and ligase
1281	 64.09	0	1254934..1255476	-	180	119384038	-	Pden_1293	-	serine acetyltransferase CysE, putative
1282	 67.51	0	1255559..1256623	-	354	119384039	-	Pden_1294	-	hypothetical protein
1283	 69.74	0	1256696..1257868	-	390	119384040	-	Pden_1295	-	lipase/acylhydrolase, putative
1284	 64.96	0	1257917..1259086	-	389	119384041	-	Pden_1296	-	DegT/DnrJ/EryC1/StrS aminotransferase
1285	 68.83	0	1259083..1260006	-	307	119384042	-	Pden_1297	-	NAD-dependent epimerase/dehydratase
1286	 66.04	0	1260007..1261131	-	374	119384043	-	Pden_1298	-	GDP-mannose 4,6-dehydratase
1287	 64.45	0	1261338..1262690	-	450	119384044	-	Pden_1299	-	prolyl-tRNA synthetase
1288	 68.20	0	1262820..1264124	+	434	119384045	-	Pden_1300	-	hypothetical protein
1289	 72.46	+1	1264128..1264817	+	229	119384046	-	Pden_1301	-	hypothetical protein
1290	 66.62	0	1264849..1267014	+	721	119384047	-	Pden_1302	-	polyphosphate kinase
1291	 67.83	0	1267083..1268624	+	513	119384048	-	Pden_1303	-	Ppx/GppA phosphatase
1292	 68.48	0	1268835..1269884	-	349	119384049	-	Pden_1304	-	peptidase M19, renal dipeptidase
1293	 64.51	0	1270069..1270392	+	107	119384050	-	Pden_1305	-	antibiotic biosynthesis monooxygenase
1294	 70.28	0	1270495..1271130	+	211	119384051	-	Pden_1306	-	cobyrinic acid a,c-diamide synthase
1295	 65.97	0	1271230..1271517	+	95	119384052	-	Pden_1307	-	hypothetical protein
1296	 65.23	0	1271560..1273785	-	741	119384053	-	Pden_1308	-	excinuclease ABC subunit B
1297	 68.27	0	1273934..1274245	+	103	119384054	-	Pden_1309	-	ETC complex I subunit region
1298	 73.08	+1	1274539..1275879	-	446	119384055	-	Pden_1310	-	integral membrane sensor signal transduction histidine kinase
1299	 68.48	0	1275876..1276538	-	220	119384056	-	Pden_1311	-	two component transcriptional regulator
1300	 70.43	0	1276535..1276933	-	132	119384057	-	Pden_1312	-	hypothetical protein
1301	 73.61	+1	1277063..1277941	+	292	119384058	-	Pden_1313	-	hypothetical protein
1302	 66.79	0	1278128..1279726	+	532	119384059	mdoG	Pden_1314	-	glucan biosynthesis protein G
1303	 69.56	0	1279723..1281897	+	724	119384060	-	Pden_1315	-	glucosyltransferase MdoH
1304	 66.23	0	1281894..1283027	+	377	119384061	-	Pden_1316	-	hypothetical protein
1305	 68.82	0	1283098..1284765	+	555	119384062	-	Pden_1317	-	formate--tetrahydrofolate ligase
1306	 70.81	+1	1284769..1285371	+	200	119384063	nadD	Pden_1318	-	nicotinic acid mononucleotide adenylyltransferase
1307	 71.62	+1	1285371..1286825	+	484	119384064	-	Pden_1319	-	peptidase S13, D-Ala-D-Ala carboxypeptidase C
1308	 69.50	0	1286836..1287258	-	140	119384065	-	Pden_1320	-	hypothetical protein
1309	 64.03	0	1287350..1288942	+	530	119384066	lysK	Pden_1321	-	lysyl-tRNA synthetase
1310	 64.97	0	1289083..1291377	+	764	119384067	-	Pden_1322	-	hypothetical protein
1311	 71.19	+1	1291414..1291899	-	161	119384068	-	Pden_1323	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1312	 67.55	0	1291957..1292970	-	337	119384069	-	Pden_1324	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1313	 69.51	0	1292967..1294022	-	351	119384070	-	Pden_1325	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1314	 65.48	0	1294024..1294947	-	307	119384071	-	Pden_1326	-	binding-protein-dependent transport systems inner membrane component
1315	 66.12	0	1294951..1295868	-	305	119384072	-	Pden_1327	-	binding-protein-dependent transport systems inner membrane component
1316	 62.24	-1	1295935..1297539	-	534	119384073	-	Pden_1328	-	extracellular solute-binding protein
1317	 68.37	0	1297935..1298813	+	292	119384074	-	Pden_1329	-	thioredoxin reductase-like
1318	 63.73	0	1298865..1299239	+	124	119384075	-	Pden_1330	-	cysteinyl-tRNA synthetase-like
1319	 66.76	0	1299236..1300336	+	366	119384076	-	Pden_1331	-	cobalamin synthesis protein, P47K
1320	 66.92	0	1300377..1300775	+	132	119384077	-	Pden_1332	-	helix-turn-helix domain-containing protein
1321	 68.72	0	1300801..1302015	-	404	119384078	-	Pden_1333	-	cobalamin synthesis protein, P47K
1322	 61.19	-1	1302041..1302259	-	72	119384079	-	Pden_1334	-	hypothetical protein
1323	 73.48	+1	1302268..1302927	-	219	119384080	-	Pden_1335	-	riboflavin biosynthesis protein RibD
1324	 65.59	0	1302938..1303402	-	154	119384081	-	Pden_1336	-	phosphoribosyl-AMP cyclohydrolase
1325	 63.13	0	1303421..1303873	-	150	119384082	-	Pden_1337	-	hypothetical protein
1326	 65.36	0	1304019..1305242	+	407	119384083	-	Pden_1338	-	cobalamin synthesis protein, P47K
1327	 68.91	0	1305333..1306001	+	222	119384084	-	Pden_1339	-	hypothetical protein
1328	 69.50	0	1306001..1306318	+	105	119384085	-	Pden_1340	-	hypothetical protein
1329	 67.60	0	1306419..1307921	+	500	119384086	-	Pden_1341	-	extracellular solute-binding protein
1330	 69.22	0	1307918..1308856	+	312	119384087	-	Pden_1342	-	binding-protein-dependent transport systems inner membrane component
1331	 69.82	0	1308853..1309677	+	274	119384088	-	Pden_1343	-	binding-protein-dependent transport systems inner membrane component
1332	 72.09	+1	1309674..1311110	+	478	119384089	-	Pden_1344	-	ABC transporter related
1333	 70.16	0	1312023..1312937	-	304	119384090	-	Pden_1346	-	methylisocitrate lyase
1334	 67.78	0	1312934..1314103	-	389	119384091	-	Pden_1347	-	methylcitrate synthase
1335	 68.37	0	1314114..1315637	-	507	119384092	-	Pden_1348	-	2-methylcitrate dehydratase
1336	 67.41	0	1315624..1316025	-	133	119384093	-	Pden_1349	-	thioesterase superfamily protein
1337	 70.63	0	1316144..1317529	+	461	119384094	-	Pden_1350	-	hypothetical protein
1338	 65.22	0	1317508..1318200	-	230	119384095	-	Pden_1351	-	LysR, substrate-binding
1339	 53.86	-2	1320063..1321046	+	327	119384096	-	Pden_1354	-	hypothetical protein
1340	 56.36	-2	1321075..1322112	+	345	119384097	-	Pden_1355	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1341	 53.92	-2	1323389..1323796	-	135	119384098	-	Pden_1357	-	hypothetical protein
1342	 68.75	0	1323995..1324810	-	271	119384099	-	Pden_1358	-	methyltransferase type 11
1343	 64.79	0	1324827..1325252	-	141	119384100	-	Pden_1359	-	pseudoazurin
1344	 71.85	+1	1325264..1326034	-	256	119384101	-	Pden_1360	-	ABC transporter related
1345	 74.12	+1	1326031..1327104	-	357	119384102	-	Pden_1361	-	transport system permease protein
1346	 65.18	0	1327101..1328108	-	335	119384103	-	Pden_1362	-	periplasmic binding protein
1347	 65.42	0	1328565..1330172	-	535	119384104	-	Pden_1363	-	isocitrate lyase
1348	 69.25	0	1330296..1331918	-	540	119384105	-	Pden_1364	-	malate synthase
1349	 70.71	0	1332053..1333486	+	477	119384106	-	Pden_1365	-	hypothetical protein
1350	 67.55	0	1333483..1334499	-	338	119384107	-	Pden_1366	-	hypothetical protein
1351	 64.23	0	1334483..1335343	-	286	119384108	-	Pden_1367	-	periplasmic binding protein
1352	 61.84	-1	1335337..1337220	-	627	119384109	-	Pden_1368	-	TonB-dependent receptor
1353	 57.83	-2	1337561..1337956	-	131	119384110	-	Pden_1369	-	hypothetical protein
1354	 54.86	-2	1338220..1338939	+	239	119384111	-	Pden_1370	-	hypothetical protein
1355	 61.78	-1	1338995..1339444	+	149	119384112	-	Pden_1371	-	hypothetical protein
1356	 65.80	0	1339398..1340204	-	268	119384113	-	Pden_1372	-	phosphoesterase or phosphohydrolase-like
1357	 65.82	0	1340206..1341507	-	433	119384114	-	Pden_1373	-	ATP-dependent Lon protease
1358	 67.05	0	1341954..1342742	-	262	119384115	-	Pden_1374	-	metallophosphoesterase
66.57	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.