IslandPathversion 1.0

IslandPath Analysis: Paracoccus denitrificans PD1222



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.57 STD DEV: 4.21
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282
2799 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1126	 74.53	+1	1110058..1110744	-	228	119383883	-	Pden_1135	-	hypothetical protein
1127	 67.47	0	1110901..1111398	+	165	119383884	-	Pden_1136	-	hypothetical protein
1128	 65.82	0	1111575..1112048	-	157	119383885	-	Pden_1137	-	ECF subfamily RNA polymerase sigma-24 factor
1129	 68.24	0	1112662..1113549	+	295	119383886	-	Pden_1138	-	helix-turn-helix domain-containing protein
1130	 63.55	0	1113565..1115775	+	736	119383887	-	Pden_1139	-	TonB-dependent siderophore receptor
1131	 70.76	0	1115769..1116647	+	292	119383888	-	Pden_1140	-	periplasmic binding protein
1132	 74.43	+1	1116644..1118614	+	656	119383889	-	Pden_1141	-	iron-hydroxamate transporter permease subunit
1133	 69.01	0	1118611..1119378	+	255	119383890	-	Pden_1142	-	ABC transporter related
1134	 66.49	0	1119400..1121097	+	565	119383891	-	Pden_1143	-	ABC transporter related
1135	 66.12	0	1121215..1121577	-	120	119383892	-	Pden_1144	-	hypothetical protein
1136	 67.03	0	1121604..1122161	-	185	119383893	-	Pden_1145	-	PfpI family intracellular peptidase
1137	 67.17	0	1122331..1123320	-	329	119383894	-	Pden_1146	-	LysR family transcriptional regulator
1138	 66.31	0	1123561..1124403	+	280	119383895	-	Pden_1147	-	extracellular solute-binding protein
1139	 67.58	0	1124465..1125124	+	219	119383896	-	Pden_1148	-	polar amino acid ABC transporter, inner membrane subunit
1140	 65.84	0	1125128..1125850	+	240	119383897	-	Pden_1149	-	polar amino acid ABC transporter, inner membrane subunit
1141	 68.52	0	1125898..1126653	+	251	119383898	-	Pden_1150	-	ABC transporter related
1142	 67.98	0	1126673..1127662	+	329	119383899	-	Pden_1151	-	arginase/agmatinase/formiminoglutamase
1143	 67.72	0	1127743..1128501	+	252	119383900	-	Pden_1152	-	ABC transporter related
1144	 73.10	+1	1128513..1129523	+	336	119383901	-	Pden_1153	-	asparaginase/glutaminase
1145	 66.67	0	1129819..1130460	+	213	119383902	-	Pden_1154	-	hypothetical protein
1146	 63.00	0	1130501..1130773	+	90	119383903	-	Pden_1155	-	hypothetical protein
1147	 68.89	0	1131251..1131565	+	104	119383904	-	Pden_1157	-	periplasmic binding protein
1148	 69.70	0	1131562..1132419	+	285	119383905	-	Pden_1158	-	hypothetical protein
1149	 64.61	0	1132445..1132687	+	80	119383906	-	Pden_1159	-	hypothetical protein
1150	 69.70	0	1132706..1133068	-	120	119383907	-	Pden_1160	-	HPP family protein+B94
1151	 67.33	0	1133256..1134461	-	401	119383908	-	Pden_1161	-	formate dehydrogenase
1152	 69.60	0	1134577..1135359	+	260	119383909	-	Pden_1162	-	arginase/agmatinase/formiminoglutamase
1153	 71.43	+1	1135367..1135786	-	139	119383910	-	Pden_1163	-	NUDIX hydrolase
1154	 66.03	0	1136932..1138197	+	421	119383911	-	Pden_1166	-	major facilitator transporter
1155	 70.05	0	1138212..1138949	-	245	119383912	-	Pden_1167	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1156	 66.10	0	1139024..1140085	+	353	119383913	-	Pden_1168	-	periplasmic binding protein
1157	 70.05	0	1140148..1141122	+	324	119383914	-	Pden_1169	-	transport system permease protein
1158	 71.18	+1	1141115..1141867	+	250	119383915	-	Pden_1170	-	ABC transporter related
1159	 66.81	0	1141928..1144021	-	697	119383916	-	Pden_1171	-	TonB-dependent receptor
1160	 65.24	0	1144375..1144584	+	69	119383917	-	Pden_1172	-	TOBE domain-containing protein
1161	 65.21	0	1144701..1145660	-	319	119383918	-	Pden_1173	-	LysR family transcriptional regulator
1162	 68.60	0	1145826..1147016	+	396	119383919	-	Pden_1174	-	muconate and chloromuconate cycloisomerases
1163	 61.86	-1	1147019..1147309	+	96	119383920	-	Pden_1175	-	muconolactone delta-isomerase
1164	 65.39	0	1147377..1148315	+	312	119383921	-	Pden_1176	-	catechol 1,2-dioxygenase
1165	 62.03	-1	1148433..1149791	+	452	119383922	-	Pden_1177	-	Rieske (2Fe-2S) domain-containing protein
1166	 63.39	0	1149788..1150276	+	162	119383923	-	Pden_1178	-	2-chlorobenzoate 1,2-dioxygenase
1167	 66.47	0	1150318..1151346	+	342	119383924	-	Pden_1179	-	oxidoreductase FAD/NAD(P)-binding subunit
1168	 69.72	0	1151343..1152128	+	261	119383925	benD	Pden_1180	-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
1169	 66.59	0	1152170..1153501	+	443	119383926	-	Pden_1181	-	major facilitator transporter
1170	 66.42	0	1153562..1154359	+	265	119383927	-	Pden_1182	-	3-oxoadipate enol-lactonase
1171	 64.90	0	1154430..1155110	-	226	119383928	-	Pden_1183	-	GntR family transcriptional regulator
1172	 66.96	0	1155325..1156353	+	342	119383929	-	Pden_1184	-	proline racemase
1173	 69.19	0	1156370..1157320	+	316	119383930	-	Pden_1185	-	ornithine cyclodeaminase/mu-crystallin
1174	 67.26	0	1157466..1158650	-	394	119383931	-	Pden_1186	-	alcohol dehydrogenase
1175	 68.92	0	1158682..1159791	-	369	119383932	-	Pden_1187	-	mandelate racemase/muconate lactonizing protein
1176	 67.23	0	1159855..1160922	-	355	119383933	-	Pden_1188	-	ferredoxin
1177	 63.56	0	1160925..1162277	-	450	119383934	-	Pden_1189	-	Rieske (2Fe-2S) domain-containing protein
1178	 65.41	0	1162292..1163167	+	291	119383935	-	Pden_1190	-	LysR family transcriptional regulator
1179	 70.45	0	1163174..1164652	-	492	119383936	-	Pden_1191	-	FAD dependent oxidoreductase
1180	 72.50	+1	1164649..1165437	-	262	119383937	-	Pden_1192	-	NADP oxidoreductase, coenzyme F420-dependent
1181	 66.67	0	1165434..1166477	-	347	119383938	-	Pden_1193	-	glycine betaine/L-proline ABC transporter, ATPase subunit
1182	 66.44	0	1166470..1167360	-	296	119383939	-	Pden_1194	-	binding-protein-dependent transport systems inner membrane component
1183	 68.96	0	1167437..1168438	-	333	119383940	-	Pden_1195	-	substrate-binding region of ABC-type glycine betaine transport system
1184	 68.53	0	1168970..1169614	-	214	119383941	-	Pden_1196	-	TetR family transcriptional regulator
1185	 67.50	0	1169763..1171799	+	678	119383942	-	Pden_1197	-	NADH:flavin oxidoreductase/NADH oxidase
1186	 66.67	0	1172410..1172922	-	170	119383943	-	Pden_1198	-	MarR family transcriptional regulator
1187	 66.32	0	1173049..1174212	+	387	119383944	-	Pden_1199	-	amidohydrolase
1188	 67.62	0	1174251..1174988	+	245	119383945	-	Pden_1200	-	hypothetical protein
1189	 66.67	0	1175013..1175708	+	231	119383946	-	Pden_1201	-	hypothetical protein
1190	 63.08	0	1176020..1176604	-	194	119383947	-	Pden_1202	-	resolvase domain-containing protein
1191	 64.04	0	1176837..1177217	+	126	119383948	-	Pden_1203	-	hypothetical protein
1192	 59.16	-1	1177372..1178277	-	301	119383949	-	Pden_1204	-	D-alanine--D-alanine ligase
1193	 69.65	0	1178651..1179286	-	211	119383950	-	Pden_1205	-	urease accessory protein UreG
1194	 71.60	+1	1179283..1179930	-	215	119383951	-	Pden_1206	-	urease accessory protein UreF
1195	 70.54	0	1179911..1180375	-	154	119383952	-	Pden_1207	-	UreE urease accessory domain-containing protein
1196	 68.56	0	1180388..1182076	-	562	119383953	ureC	Pden_1208	-	urease subunit alpha
1197	 69.50	0	1182076..1182393	-	105	119383954	-	Pden_1209	-	urease, beta subunit
1198	 71.66	+1	1182394..1182954	-	186	119383955	-	Pden_1210	-	HupE/UreJ protein
1199	 67.31	0	1182955..1183266	-	103	119383956	-	Pden_1211	-	urease, gamma subunit
1200	 72.38	+1	1183268..1184107	-	279	119383957	-	Pden_1212	-	urease accessory protein UreD
1201	 64.54	0	1184112..1184393	-	93	119383958	-	Pden_1213	-	hypothetical protein
1202	 67.51	0	1184520..1184873	+	117	119383959	-	Pden_1214	-	regulatory protein, ArsR
1203	 65.41	0	1184870..1185346	+	158	119383960	-	Pden_1215	-	activator of Hsp90 ATPase 1 family protein
1204	 68.50	0	1185343..1186215	+	290	119383961	-	Pden_1216	-	activator of Hsp90 ATPase 1 family protein
1205	 65.07	0	1186313..1186939	+	208	119383962	-	Pden_1217	-	hypothetical protein
1206	 55.56	-2	1186983..1187225	+	80	119383963	-	Pden_1218	-	hypothetical protein
1207	 52.53	-2	1187344..1188015	-	223	119383964	-	Pden_1219	-	hypothetical protein
1208	 52.21	-2	1188064..1188312	+	82	119383965	-	Pden_1220	-	hypothetical protein
1209	 60.21	-1	1188554..1188940	-	128	119383966	-	Pden_1221	-	transposase, IS4 family protein
1210	 61.52	-1	1188937..1189305	-	122	119383967	-	Pden_1222	-	transposase and inactivated derivative
1211	 62.37	-1	1189396..1190604	+	402	119383968	-	Pden_1223	-	phage integrase family protein
1212	 58.20	-1	1190595..1190783	+	62	119383969	-	Pden_1224	-	hypothetical protein
1213	 59.72	-1	1190776..1191063	+	95	119383970	-	Pden_1225	-	hypothetical protein
1214	 57.14	-2	1191160..1191747	+	195	119383971	-	Pden_1226	-	hypothetical protein
1215	 54.24	-2	1191719..1192684	+	321	119383972	-	Pden_1227	-	hypothetical protein
1216	 59.30	-1	1192946..1193203	-	85	119383973	-	Pden_1228	-	XRE family transcriptional regulator
1217	 49.61	-2	1193452..1193832	+	126	119383974	-	Pden_1229	-	hypothetical protein
1218	 51.88	-2	1193829..1194254	+	141	119383975	-	Pden_1230	-	hypothetical protein
1219	 58.99	-1	1194291..1194746	+	151	119383976	-	Pden_1231	-	hypothetical protein
1220	 69.31	0	1195187..1196395	+	402	119383977	-	Pden_1232	-	hypothetical protein
1221	 66.91	0	1196396..1197229	-	277	119383978	-	Pden_1233	-	2-dehydro-3-deoxyphosphooctonate aldolase
1222	 67.18	0	1197226..1198965	-	579	119383979	-	Pden_1234	-	capsule polysaccharide export protein-like
1223	 58.10	-2	1198949..1199602	-	217	119383980	-	Pden_1235	-	ABC transporter related
1224	 71.04	+1	1199757..1200419	+	220	119383981	-	Pden_1236	-	uracil-DNA glycosylase superfamily protein
1225	 75.03	+2	1200403..1201155	+	250	119383982	-	Pden_1237	-	hypothetical protein
66.57	MEAN

4.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.