version 1.0
Paracoccus denitrificans PD1222 chromosome 1, complete sequence - 1..2852282 2799 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1118 74.85 +1 1103802..1104131 + 109 119383875 - Pden_1127 - hypothetical protein 1119 71.50 +1 1104128..1104976 + 282 119383876 - Pden_1128 - von Willebrand factor, type A 1120 72.57 +1 1104973..1105920 + 315 119383877 - Pden_1129 - von Willebrand factor, type A 1121 71.41 +1 1105917..1106528 + 203 119383878 - Pden_1130 - hypothetical protein 1122 71.26 +1 1106522..1107718 + 398 119383879 - Pden_1131 - hypothetical protein 1123 68.93 0 1107943..1108827 - 294 119383880 - Pden_1132 - PRC-barrel containing protein 1124 68.47 0 1108967..1109188 - 73 119383881 - Pden_1133 - hypothetical protein 1125 66.78 0 1109204..1110061 - 285 119383882 - Pden_1134 - short-chain dehydrogenase/reductase SDR 1126 74.53 +1 1110058..1110744 - 228 119383883 - Pden_1135 - hypothetical protein 1127 67.47 0 1110901..1111398 + 165 119383884 - Pden_1136 - hypothetical protein 1128 65.82 0 1111575..1112048 - 157 119383885 - Pden_1137 - ECF subfamily RNA polymerase sigma-24 factor 1129 68.24 0 1112662..1113549 + 295 119383886 - Pden_1138 - helix-turn-helix domain-containing protein 1130 63.55 0 1113565..1115775 + 736 119383887 - Pden_1139 - TonB-dependent siderophore receptor 1131 70.76 0 1115769..1116647 + 292 119383888 - Pden_1140 - periplasmic binding protein 1132 74.43 +1 1116644..1118614 + 656 119383889 - Pden_1141 - iron-hydroxamate transporter permease subunit 1133 69.01 0 1118611..1119378 + 255 119383890 - Pden_1142 - ABC transporter related 1134 66.49 0 1119400..1121097 + 565 119383891 - Pden_1143 - ABC transporter related 1135 66.12 0 1121215..1121577 - 120 119383892 - Pden_1144 - hypothetical protein 1136 67.03 0 1121604..1122161 - 185 119383893 - Pden_1145 - PfpI family intracellular peptidase 1137 67.17 0 1122331..1123320 - 329 119383894 - Pden_1146 - LysR family transcriptional regulator 1138 66.31 0 1123561..1124403 + 280 119383895 - Pden_1147 - extracellular solute-binding protein 1139 67.58 0 1124465..1125124 + 219 119383896 - Pden_1148 - polar amino acid ABC transporter, inner membrane subunit 1140 65.84 0 1125128..1125850 + 240 119383897 - Pden_1149 - polar amino acid ABC transporter, inner membrane subunit 1141 68.52 0 1125898..1126653 + 251 119383898 - Pden_1150 - ABC transporter related 1142 67.98 0 1126673..1127662 + 329 119383899 - Pden_1151 - arginase/agmatinase/formiminoglutamase 1143 67.72 0 1127743..1128501 + 252 119383900 - Pden_1152 - ABC transporter related 1144 73.10 +1 1128513..1129523 + 336 119383901 - Pden_1153 - asparaginase/glutaminase 1145 66.67 0 1129819..1130460 + 213 119383902 - Pden_1154 - hypothetical protein 1146 63.00 0 1130501..1130773 + 90 119383903 - Pden_1155 - hypothetical protein 1147 68.89 0 1131251..1131565 + 104 119383904 - Pden_1157 - periplasmic binding protein 1148 69.70 0 1131562..1132419 + 285 119383905 - Pden_1158 - hypothetical protein 1149 64.61 0 1132445..1132687 + 80 119383906 - Pden_1159 - hypothetical protein 1150 69.70 0 1132706..1133068 - 120 119383907 - Pden_1160 - HPP family protein+B94 1151 67.33 0 1133256..1134461 - 401 119383908 - Pden_1161 - formate dehydrogenase 1152 69.60 0 1134577..1135359 + 260 119383909 - Pden_1162 - arginase/agmatinase/formiminoglutamase 1153 71.43 +1 1135367..1135786 - 139 119383910 - Pden_1163 - NUDIX hydrolase 1154 66.03 0 1136932..1138197 + 421 119383911 - Pden_1166 - major facilitator transporter 1155 70.05 0 1138212..1138949 - 245 119383912 - Pden_1167 - molybdenum ABC transporter, periplasmic molybdate-binding protein 1156 66.10 0 1139024..1140085 + 353 119383913 - Pden_1168 - periplasmic binding protein 1157 70.05 0 1140148..1141122 + 324 119383914 - Pden_1169 - transport system permease protein 1158 71.18 +1 1141115..1141867 + 250 119383915 - Pden_1170 - ABC transporter related 1159 66.81 0 1141928..1144021 - 697 119383916 - Pden_1171 - TonB-dependent receptor 1160 65.24 0 1144375..1144584 + 69 119383917 - Pden_1172 - TOBE domain-containing protein 1161 65.21 0 1144701..1145660 - 319 119383918 - Pden_1173 - LysR family transcriptional regulator 1162 68.60 0 1145826..1147016 + 396 119383919 - Pden_1174 - muconate and chloromuconate cycloisomerases 1163 61.86 -1 1147019..1147309 + 96 119383920 - Pden_1175 - muconolactone delta-isomerase 1164 65.39 0 1147377..1148315 + 312 119383921 - Pden_1176 - catechol 1,2-dioxygenase 1165 62.03 -1 1148433..1149791 + 452 119383922 - Pden_1177 - Rieske (2Fe-2S) domain-containing protein 1166 63.39 0 1149788..1150276 + 162 119383923 - Pden_1178 - 2-chlorobenzoate 1,2-dioxygenase 1167 66.47 0 1150318..1151346 + 342 119383924 - Pden_1179 - oxidoreductase FAD/NAD(P)-binding subunit 1168 69.72 0 1151343..1152128 + 261 119383925 benD Pden_1180 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase 1169 66.59 0 1152170..1153501 + 443 119383926 - Pden_1181 - major facilitator transporter 1170 66.42 0 1153562..1154359 + 265 119383927 - Pden_1182 - 3-oxoadipate enol-lactonase 1171 64.90 0 1154430..1155110 - 226 119383928 - Pden_1183 - GntR family transcriptional regulator 1172 66.96 0 1155325..1156353 + 342 119383929 - Pden_1184 - proline racemase 1173 69.19 0 1156370..1157320 + 316 119383930 - Pden_1185 - ornithine cyclodeaminase/mu-crystallin 1174 67.26 0 1157466..1158650 - 394 119383931 - Pden_1186 - alcohol dehydrogenase 1175 68.92 0 1158682..1159791 - 369 119383932 - Pden_1187 - mandelate racemase/muconate lactonizing protein 1176 67.23 0 1159855..1160922 - 355 119383933 - Pden_1188 - ferredoxin 1177 63.56 0 1160925..1162277 - 450 119383934 - Pden_1189 - Rieske (2Fe-2S) domain-containing protein 1178 65.41 0 1162292..1163167 + 291 119383935 - Pden_1190 - LysR family transcriptional regulator 1179 70.45 0 1163174..1164652 - 492 119383936 - Pden_1191 - FAD dependent oxidoreductase 1180 72.50 +1 1164649..1165437 - 262 119383937 - Pden_1192 - NADP oxidoreductase, coenzyme F420-dependent 1181 66.67 0 1165434..1166477 - 347 119383938 - Pden_1193 - glycine betaine/L-proline ABC transporter, ATPase subunit 1182 66.44 0 1166470..1167360 - 296 119383939 - Pden_1194 - binding-protein-dependent transport systems inner membrane component 1183 68.96 0 1167437..1168438 - 333 119383940 - Pden_1195 - substrate-binding region of ABC-type glycine betaine transport system 1184 68.53 0 1168970..1169614 - 214 119383941 - Pden_1196 - TetR family transcriptional regulator 1185 67.50 0 1169763..1171799 + 678 119383942 - Pden_1197 - NADH:flavin oxidoreductase/NADH oxidase 1186 66.67 0 1172410..1172922 - 170 119383943 - Pden_1198 - MarR family transcriptional regulator 1187 66.32 0 1173049..1174212 + 387 119383944 - Pden_1199 - amidohydrolase 1188 67.62 0 1174251..1174988 + 245 119383945 - Pden_1200 - hypothetical protein 1189 66.67 0 1175013..1175708 + 231 119383946 - Pden_1201 - hypothetical protein 1190 63.08 0 1176020..1176604 - 194 119383947 - Pden_1202 - resolvase domain-containing protein 1191 64.04 0 1176837..1177217 + 126 119383948 - Pden_1203 - hypothetical protein 1192 59.16 -1 1177372..1178277 - 301 119383949 - Pden_1204 - D-alanine--D-alanine ligase 1193 69.65 0 1178651..1179286 - 211 119383950 - Pden_1205 - urease accessory protein UreG 1194 71.60 +1 1179283..1179930 - 215 119383951 - Pden_1206 - urease accessory protein UreF 1195 70.54 0 1179911..1180375 - 154 119383952 - Pden_1207 - UreE urease accessory domain-containing protein 1196 68.56 0 1180388..1182076 - 562 119383953 ureC Pden_1208 - urease subunit alpha 1197 69.50 0 1182076..1182393 - 105 119383954 - Pden_1209 - urease, beta subunit 1198 71.66 +1 1182394..1182954 - 186 119383955 - Pden_1210 - HupE/UreJ protein 1199 67.31 0 1182955..1183266 - 103 119383956 - Pden_1211 - urease, gamma subunit 1200 72.38 +1 1183268..1184107 - 279 119383957 - Pden_1212 - urease accessory protein UreD 1201 64.54 0 1184112..1184393 - 93 119383958 - Pden_1213 - hypothetical protein 1202 67.51 0 1184520..1184873 + 117 119383959 - Pden_1214 - regulatory protein, ArsR 1203 65.41 0 1184870..1185346 + 158 119383960 - Pden_1215 - activator of Hsp90 ATPase 1 family protein 1204 68.50 0 1185343..1186215 + 290 119383961 - Pden_1216 - activator of Hsp90 ATPase 1 family protein 1205 65.07 0 1186313..1186939 + 208 119383962 - Pden_1217 - hypothetical protein 1206 55.56 -2 1186983..1187225 + 80 119383963 - Pden_1218 - hypothetical protein 1207 52.53 -2 1187344..1188015 - 223 119383964 - Pden_1219 - hypothetical protein 1208 52.21 -2 1188064..1188312 + 82 119383965 - Pden_1220 - hypothetical protein 1209 60.21 -1 1188554..1188940 - 128 119383966 - Pden_1221 - transposase, IS4 family protein 1210 61.52 -1 1188937..1189305 - 122 119383967 - Pden_1222 - transposase and inactivated derivative 1211 62.37 -1 1189396..1190604 + 402 119383968 - Pden_1223 - phage integrase family protein 1212 58.20 -1 1190595..1190783 + 62 119383969 - Pden_1224 - hypothetical protein 1213 59.72 -1 1190776..1191063 + 95 119383970 - Pden_1225 - hypothetical protein 1214 57.14 -2 1191160..1191747 + 195 119383971 - Pden_1226 - hypothetical protein 1215 54.24 -2 1191719..1192684 + 321 119383972 - Pden_1227 - hypothetical protein 1216 59.30 -1 1192946..1193203 - 85 119383973 - Pden_1228 - XRE family transcriptional regulator 1217 49.61 -2 1193452..1193832 + 126 119383974 - Pden_1229 - hypothetical protein 66.57 MEAN 4.21 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0