IslandPath Analysis: Orientia tsutsugamushi str. Ikeda



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.48   STD DEV: 3.15
Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
870	 33.10	0	913661..914935	+	424	189183777	-	OTT_0870	-	putative conjugative transfer protein TraD
871	 30.99	0	914945..915370	-	141	189183778	-	OTT_0871	-	putative transposase
872	 32.29	0	915587..916549	+	320	189183779	-	OTT_0872	-	transposase
873	 30.84	0	916565..917125	-	186	189183780	-	OTT_0873	-	putative transposase
874	 31.28	0	917177..918295	-	372	189183781	-	OTT_0874	-	putative conjugative transfer protein TraI
875	 28.93	0	918456..920111	+	551	189183782	-	OTT_0875	-	ankyrin repeat-containing protein 10_02
876	 33.33	0	920140..920964	-	274	189183783	-	OTT_0876	-	putative conjugative transfer protein TraA
877	 33.19	0	920979..921689	-	236	189183784	-	OTT_0877	-	putative conjugative transfer protein TraA
878	 33.87	0	921674..922984	-	436	189183785	-	OTT_0878	-	putative conjugative transfer protein TraA
879	 35.96	+1	923262..923717	+	151	189183786	-	OTT_0879	-	putative conjugative transfer protein TraD
880	 31.33	0	923785..924831	-	348	189183787	-	OTT_0880	-	hypothetical protein
881	 30.77	0	924953..925108	-	51	189183788	-	OTT_0881	-	RelA/SpoT-related protein
882	 32.06	0	925148..925540	-	130	189183789	-	OTT_0882	-	RelA/SpoT-related protein
883	 29.70	0	925582..926076	-	164	189183790	-	OTT_0883	-	hypothetical protein
884	 30.14	0	926095..927033	-	312	189183791	-	OTT_0884	-	hypothetical protein
885	 30.80	0	927056..927292	-	78	189183792	-	OTT_0885	-	hypothetical protein
886	 29.33	0	927418..927717	+	99	189183793	-	OTT_0886	-	N6 adenine-specific DNA-methyltransferase
887	 31.47	0	928484..930148	+	554	189183794	-	OTT_0887	-	repeat-containing protein A_04
888	 32.08	0	930237..931670	-	477	189183795	-	OTT_0888	-	replicative DNA helicase
889	 30.25	0	931695..932993	-	432	189183796	-	OTT_0889	-	hypothetical protein
890	 29.76	0	933618..933953	+	111	189183797	-	OTT_0890	-	transposase
891	 31.43	0	934161..934370	-	69	189183798	-	OTT_0891	-	putative conjugative transfer protein TraD
892	 32.32	0	934570..934866	+	98	189183799	-	OTT_0892	-	putative conjugative transfer protein TraA
893	 27.18	-1	935042..935236	+	64	189183800	-	OTT_0893	-	putative conjugative transfer protein TraA
894	 26.39	-1	935892..937490	+	532	189183801	-	OTT_0894	-	hypothetical protein
895	 25.78	-1	937912..938295	-	127	189183802	grxC	OTT_0895	-	glutaredoxin 3
896	 21.68	-2	938503..938931	-	142	189183803	-	OTT_0896	-	hypothetical protein
897	 25.75	-1	939029..939832	-	267	189183804	-	OTT_0897	-	hypothetical protein
898	 29.19	0	939845..940447	-	200	189183805	-	OTT_0898	-	hypothetical protein
899	 25.82	-1	940440..940865	-	141	189183806	-	OTT_0899	-	hypothetical protein
900	 27.49	-1	940865..941206	-	113	189183807	-	OTT_0900	-	hypothetical protein
901	 25.46	-1	941208..941753	-	181	189183808	-	OTT_0901	-	hypothetical protein
902	 32.26	0	941787..942902	-	371	189183809	-	OTT_0902	-	hypothetical protein
903	 29.19	0	942914..943468	-	184	189183810	-	OTT_0903	-	hypothetical protein
904	 33.12	0	944140..945096	-	318	189183811	-	OTT_0904	-	hypothetical protein
905	 34.66	+1	945179..946531	-	450	189183812	ftsZ	OTT_0905	-	cell division protein FtsZ
906	 34.52	0	946736..948001	-	421	189183813	murA	OTT_0906	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
907	 32.61	0	948826..949521	+	231	189183814	-	OTT_0907	-	hypothetical protein
908	 29.55	0	951098..951943	-	281	189183815	-	OTT_0908	-	hypothetical protein
909	 26.67	-1	953355..953459	-	34	189183816	-	OTT_0909	-	transposase
910	 29.44	0	954103..954333	-	76	189183817	-	OTT_0910	-	hypothetical protein
911	 27.96	-1	954538..954909	+	123	189183818	nuoA	OTT_0911	-	NADH dehydrogenase I chain A
912	 35.66	+1	954922..955437	+	171	189183819	nuoB	OTT_0912	-	NADH dehydrogenase I chain B
913	 28.60	0	955448..956038	+	196	189183820	nuoC	OTT_0913	-	NADH dehydrogenase I chain C
914	 35.10	+1	956050..957240	+	396	189183821	nuoD	OTT_0914	-	NADH dehydrogenase I chain D
915	 27.93	-1	957237..957791	+	184	189183822	nuoE	OTT_0915	-	NADH dehydrogenase I chain E
916	 36.33	+1	957809..959077	+	422	189183823	nuoF	OTT_0916	-	NADH dehydrogenase I chain F
917	 31.76	0	959381..960142	-	253	189183824	-	OTT_0917	-	hypothetical protein
918	 29.07	0	960633..961007	-	124	189183825	-	OTT_0918	-	transposase
919	 33.76	0	961019..961486	-	155	189183826	-	OTT_0919	-	transposase
920	 29.07	0	961866..963365	+	499	189183827	tlc5	OTT_0920	-	ADP,ATP carrier protein homolog
921	 33.33	0	963611..963967	+	118	189183828	-	OTT_0921	-	hypothetical protein
922	 33.08	0	963983..964384	+	133	189183829	-	OTT_0922	-	hypothetical protein
923	 30.21	0	964532..965011	+	159	189183830	ruvC	OTT_0923	-	holliday junction endodeoxyribonuclease RuvC
924	 34.99	+1	965068..966030	+	320	189183831	nifR3	OTT_0924	-	NifR3 protein
925	 23.01	-2	966065..966403	-	112	189183832	-	OTT_0925	-	hypothetical protein
926	 28.61	0	966559..967299	+	246	189183833	ubiG	OTT_0926	-	3-demethylubiquinone-9 3-methyltransferase
927	 30.80	0	967286..968152	-	288	189183834	hemK	OTT_0927	-	possible protoporphyrinogen oxidase
928	 32.63	0	968154..969005	-	283	189183835	truA	OTT_0928	-	pseudouridylate synthase I
929	 32.09	0	969147..969629	+	160	189183836	rplM	OTT_0929	-	50S ribosomal protein L13
930	 37.60	+1	969633..970124	+	163	189183837	rpsI	OTT_0930	-	30S ribosomal protein S9
931	 24.77	-2	970459..971205	+	248	189183838	-	OTT_0931	-	hypothetical protein
932	 30.43	0	971622..971759	+	45	189183839	-	OTT_0932	-	transposase
933	 29.29	0	971749..972168	+	139	189183840	-	OTT_0933	-	transposase
934	 22.83	-2	975428..975703	+	91	189183841	-	OTT_0934	-	hypothetical protein
935	 32.82	0	976388..976582	+	64	189183842	-	OTT_0935	-	putative integrase
936	 32.40	0	976691..977332	+	213	189183843	-	OTT_0936	-	putative integrase
937	 30.32	0	977389..977853	-	154	189183844	-	OTT_0937	-	hypothetical protein
938	 31.52	0	977850..978401	-	183	189183845	-	OTT_0938	-	putative conjugative transfer protein TraE
939	 36.73	+1	978401..978724	-	107	189183846	-	OTT_0939	-	hypothetical protein
940	 32.66	0	978862..979908	-	348	189183847	-	OTT_0940	-	putative integrase
941	 26.42	-1	980528..981178	-	216	189183848	sco2	OTT_0941	-	Sco2 protein precursor
942	 34.37	0	984104..985072	-	322	189183849	-	OTT_0942	-	Sua5/YciO/YrdC family protein
943	 30.26	0	985050..987101	-	683	189183850	glyS	OTT_0943	-	glycyl-tRNA synthetase beta chain
944	 36.06	+1	987094..987972	-	292	189183851	glyQ	OTT_0944	-	glycyl-tRNA synthetase alpha chain
945	 40.75	+2	988517..990067	+	516	189183852	-	OTT_0945	-	56 kDa type-specific antigen
946	 33.20	0	990294..991028	+	244	189183853	-	OTT_0946	-	56 kDa type-specific antigen-like protein
947	 30.95	0	991196..992704	+	502	189183854	murC	OTT_0947	-	UDP-N-acetylmuramate-alanine ligase
948	 31.58	0	992673..993584	+	303	189183855	murB	OTT_0948	-	UDP-N-acetylenolpyruvoylglucosamine reductase
949	 31.18	0	993562..994536	+	324	189183856	ddl	OTT_0949	-	D-alanine-D-alanine ligase
950	 28.66	0	994547..995359	+	270	189183857	ftsQ	OTT_0950	-	cell division protein FtsQ
951	 29.73	0	995380..996516	+	378	189183858	recF	OTT_0951	-	RecF protein
952	 28.18	-1	996667..996996	-	109	189183859	-	OTT_0952	-	transposase
953	 35.14	+1	997457..997567	+	36	189183860	-	OTT_0953	-	putative conjugative transfer protein TraH
954	 32.42	0	997773..997991	+	72	189183861	-	OTT_0954	-	transposase
955	 28.34	0	998034..998474	+	146	189183862	-	OTT_0955	-	transposase
956	 29.93	0	999750..1000160	-	136	189183863	-	OTT_0956	-	hypothetical protein
957	 30.45	0	1000516..1001001	+	161	189183864	invA	OTT_0957	-	invasion protein A
958	 29.17	0	1002066..1002185	+	39	189183865	-	OTT_0958	-	putative conjugative transfer protein TraA
959	 31.53	0	1002249..1002359	+	36	189183866	-	OTT_0959	-	putative conjugative transfer protein TraA
960	 31.48	0	1002399..1004615	+	738	189183867	-	OTT_0960	-	putative conjugative transfer protein TraA
961	 32.42	0	1005106..1007745	-	879	189183868	secA1	OTT_0961	-	preprotein translocase SecA subunit
962	 30.62	0	1008139..1009170	+	343	189183869	prsA	OTT_0962	-	protein export protein PrsA precursor
963	 31.84	0	1009271..1010611	-	446	189183870	folC	OTT_0963	-	folylpolyglutamate synthase
964	 33.69	0	1010862..1012808	+	648	189183871	thrS	OTT_0964	-	threonyl-tRNA synthetase
965	 32.14	0	1012861..1013364	+	167	189183872	infC	OTT_0965	-	translation initiation factor IF-3
966	 36.69	+1	1013531..1013977	+	148	189183873	dut	OTT_0966	-	deoxyuridine 5-triphosphate nucleotidohydrolase
967	 27.47	-1	1014072..1014617	+	181	189183874	atpH	OTT_0967	-	ATP synthase delta chain
968	 33.66	0	1014660..1016198	+	512	189183875	atpA	OTT_0968	-	ATP synthase alpha chain
969	 30.75	0	1016213..1017103	+	296	189183876	atpG	OTT_0969	-	ATP synthase gamma chain
31.48	MEAN

3.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.