IslandPath Analysis: Orientia tsutsugamushi str. Ikeda



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.48   STD DEV: 3.15
Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
836	 36.60	+1	881162..881926	-	254	189183743	-	OTT_0836	-	hypothetical protein
837	 29.41	0	882685..883041	-	118	189183744	cutA	OTT_0837	-	periplasmic divalent cation tolerance protein
838	 31.34	0	883099..884451	-	450	189183745	ffh	OTT_0838	-	signal recognition particle protein
839	 28.01	-1	885541..885822	-	93	189183746	-	OTT_0839	-	hypothetical protein
840	 28.33	0	885876..886115	+	79	189183747	xseB	OTT_0840	-	exodeoxyribonuclease small subunit
841	 30.03	0	887229..887531	-	100	189183748	-	OTT_0841	-	transposase
842	 29.30	0	887604..887975	-	123	189183749	-	OTT_0842	-	transposase
843	 32.29	0	888488..889450	+	320	189183750	-	OTT_0843	-	transposase
844	 27.20	-1	890215..890589	+	124	189183751	-	OTT_0844	-	transposase
845	 31.11	0	890576..890710	+	44	189183752	-	OTT_0845	-	transposase
846	 28.80	0	890767..891141	+	124	189183753	-	OTT_0846	-	transposase
847	 29.98	0	891128..891634	+	168	189183754	-	OTT_0847	-	transposase
848	 32.77	0	892171..892347	-	58	189183755	-	OTT_0848	-	transposase
849	 26.84	-1	892729..893406	+	225	189183756	-	OTT_0849	-	hypothetical protein
850	 32.41	0	893470..894870	+	466	189183757	fumC	OTT_0850	-	fumarate hydratase
851	 31.10	0	895036..896514	-	492	189183758	tppB	OTT_0851	-	tripeptide permease TppB, putative POT family peptide transport protein
852	 32.99	0	899766..901238	-	490	189183759	-	OTT_0852	-	ankyrin repeat-containing protein 13
853	 27.40	-1	901633..901851	-	72	189183760	-	OTT_0853	-	transposase
854	 30.31	0	901889..902749	+	286	189183761	-	OTT_0854	-	transposase
855	 34.88	+1	902734..904668	-	644	189183762	-	OTT_0855	-	putative conjugative transfer protein TraG
856	 32.29	0	904751..905713	-	320	189183763	-	OTT_0856	-	transposase
857	 38.39	+2	905890..906225	-	111	189183764	-	OTT_0857	-	putative conjugative transfer protein TraG
858	 32.71	0	906225..906704	-	159	189183765	-	OTT_0858	-	putative conjugative transfer protein TraH
859	 36.83	+1	906899..907528	-	209	189183766	-	OTT_0859	-	putative conjugative transfer protein TraH
860	 35.34	+1	907525..908223	-	232	189183767	-	OTT_0860	-	putative conjugative transfer protein TraF
861	 34.39	0	908220..908504	-	94	189183768	-	OTT_0861	-	putative conjugative transfer protein TraN
862	 29.95	0	908934..909791	+	285	189183769	-	OTT_0862	-	putative integrase
863	 33.60	0	909760..910131	+	123	189183770	-	OTT_0863	-	putative integrase
864	 39.33	+2	910448..910747	-	99	189183771	-	OTT_0864	-	hypothetical protein
865	 34.21	0	910731..911870	+	379	189183772	-	OTT_0865	-	reverse transcriptase
866	 36.91	+1	912283..912897	+	204	189183773	-	OTT_0866	-	putative conjugative transfer protein TraH
867	 38.43	+2	912962..913177	+	71	189183774	-	OTT_0867	-	putative conjugative transfer protein TraH
868	 29.12	0	913101..913361	+	86	189183775	-	OTT_0868	-	putative conjugative transfer protein TraH
869	 31.13	0	913342..913704	+	120	189183776	-	OTT_0869	-	putative conjugative transfer protein TraD
870	 33.10	0	913661..914935	+	424	189183777	-	OTT_0870	-	putative conjugative transfer protein TraD
871	 30.99	0	914945..915370	-	141	189183778	-	OTT_0871	-	putative transposase
872	 32.29	0	915587..916549	+	320	189183779	-	OTT_0872	-	transposase
873	 30.84	0	916565..917125	-	186	189183780	-	OTT_0873	-	putative transposase
874	 31.28	0	917177..918295	-	372	189183781	-	OTT_0874	-	putative conjugative transfer protein TraI
875	 28.93	0	918456..920111	+	551	189183782	-	OTT_0875	-	ankyrin repeat-containing protein 10_02
876	 33.33	0	920140..920964	-	274	189183783	-	OTT_0876	-	putative conjugative transfer protein TraA
877	 33.19	0	920979..921689	-	236	189183784	-	OTT_0877	-	putative conjugative transfer protein TraA
878	 33.87	0	921674..922984	-	436	189183785	-	OTT_0878	-	putative conjugative transfer protein TraA
879	 35.96	+1	923262..923717	+	151	189183786	-	OTT_0879	-	putative conjugative transfer protein TraD
880	 31.33	0	923785..924831	-	348	189183787	-	OTT_0880	-	hypothetical protein
881	 30.77	0	924953..925108	-	51	189183788	-	OTT_0881	-	RelA/SpoT-related protein
882	 32.06	0	925148..925540	-	130	189183789	-	OTT_0882	-	RelA/SpoT-related protein
883	 29.70	0	925582..926076	-	164	189183790	-	OTT_0883	-	hypothetical protein
884	 30.14	0	926095..927033	-	312	189183791	-	OTT_0884	-	hypothetical protein
885	 30.80	0	927056..927292	-	78	189183792	-	OTT_0885	-	hypothetical protein
886	 29.33	0	927418..927717	+	99	189183793	-	OTT_0886	-	N6 adenine-specific DNA-methyltransferase
887	 31.47	0	928484..930148	+	554	189183794	-	OTT_0887	-	repeat-containing protein A_04
888	 32.08	0	930237..931670	-	477	189183795	-	OTT_0888	-	replicative DNA helicase
889	 30.25	0	931695..932993	-	432	189183796	-	OTT_0889	-	hypothetical protein
890	 29.76	0	933618..933953	+	111	189183797	-	OTT_0890	-	transposase
891	 31.43	0	934161..934370	-	69	189183798	-	OTT_0891	-	putative conjugative transfer protein TraD
892	 32.32	0	934570..934866	+	98	189183799	-	OTT_0892	-	putative conjugative transfer protein TraA
893	 27.18	-1	935042..935236	+	64	189183800	-	OTT_0893	-	putative conjugative transfer protein TraA
894	 26.39	-1	935892..937490	+	532	189183801	-	OTT_0894	-	hypothetical protein
895	 25.78	-1	937912..938295	-	127	189183802	grxC	OTT_0895	-	glutaredoxin 3
896	 21.68	-2	938503..938931	-	142	189183803	-	OTT_0896	-	hypothetical protein
897	 25.75	-1	939029..939832	-	267	189183804	-	OTT_0897	-	hypothetical protein
898	 29.19	0	939845..940447	-	200	189183805	-	OTT_0898	-	hypothetical protein
899	 25.82	-1	940440..940865	-	141	189183806	-	OTT_0899	-	hypothetical protein
900	 27.49	-1	940865..941206	-	113	189183807	-	OTT_0900	-	hypothetical protein
901	 25.46	-1	941208..941753	-	181	189183808	-	OTT_0901	-	hypothetical protein
902	 32.26	0	941787..942902	-	371	189183809	-	OTT_0902	-	hypothetical protein
903	 29.19	0	942914..943468	-	184	189183810	-	OTT_0903	-	hypothetical protein
904	 33.12	0	944140..945096	-	318	189183811	-	OTT_0904	-	hypothetical protein
905	 34.66	+1	945179..946531	-	450	189183812	ftsZ	OTT_0905	-	cell division protein FtsZ
906	 34.52	0	946736..948001	-	421	189183813	murA	OTT_0906	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
907	 32.61	0	948826..949521	+	231	189183814	-	OTT_0907	-	hypothetical protein
908	 29.55	0	951098..951943	-	281	189183815	-	OTT_0908	-	hypothetical protein
909	 26.67	-1	953355..953459	-	34	189183816	-	OTT_0909	-	transposase
910	 29.44	0	954103..954333	-	76	189183817	-	OTT_0910	-	hypothetical protein
911	 27.96	-1	954538..954909	+	123	189183818	nuoA	OTT_0911	-	NADH dehydrogenase I chain A
912	 35.66	+1	954922..955437	+	171	189183819	nuoB	OTT_0912	-	NADH dehydrogenase I chain B
913	 28.60	0	955448..956038	+	196	189183820	nuoC	OTT_0913	-	NADH dehydrogenase I chain C
914	 35.10	+1	956050..957240	+	396	189183821	nuoD	OTT_0914	-	NADH dehydrogenase I chain D
915	 27.93	-1	957237..957791	+	184	189183822	nuoE	OTT_0915	-	NADH dehydrogenase I chain E
916	 36.33	+1	957809..959077	+	422	189183823	nuoF	OTT_0916	-	NADH dehydrogenase I chain F
917	 31.76	0	959381..960142	-	253	189183824	-	OTT_0917	-	hypothetical protein
918	 29.07	0	960633..961007	-	124	189183825	-	OTT_0918	-	transposase
919	 33.76	0	961019..961486	-	155	189183826	-	OTT_0919	-	transposase
920	 29.07	0	961866..963365	+	499	189183827	tlc5	OTT_0920	-	ADP,ATP carrier protein homolog
921	 33.33	0	963611..963967	+	118	189183828	-	OTT_0921	-	hypothetical protein
922	 33.08	0	963983..964384	+	133	189183829	-	OTT_0922	-	hypothetical protein
923	 30.21	0	964532..965011	+	159	189183830	ruvC	OTT_0923	-	holliday junction endodeoxyribonuclease RuvC
924	 34.99	+1	965068..966030	+	320	189183831	nifR3	OTT_0924	-	NifR3 protein
925	 23.01	-2	966065..966403	-	112	189183832	-	OTT_0925	-	hypothetical protein
926	 28.61	0	966559..967299	+	246	189183833	ubiG	OTT_0926	-	3-demethylubiquinone-9 3-methyltransferase
927	 30.80	0	967286..968152	-	288	189183834	hemK	OTT_0927	-	possible protoporphyrinogen oxidase
928	 32.63	0	968154..969005	-	283	189183835	truA	OTT_0928	-	pseudouridylate synthase I
929	 32.09	0	969147..969629	+	160	189183836	rplM	OTT_0929	-	50S ribosomal protein L13
930	 37.60	+1	969633..970124	+	163	189183837	rpsI	OTT_0930	-	30S ribosomal protein S9
931	 24.77	-2	970459..971205	+	248	189183838	-	OTT_0931	-	hypothetical protein
932	 30.43	0	971622..971759	+	45	189183839	-	OTT_0932	-	transposase
933	 29.29	0	971749..972168	+	139	189183840	-	OTT_0933	-	transposase
934	 22.83	-2	975428..975703	+	91	189183841	-	OTT_0934	-	hypothetical protein
935	 32.82	0	976388..976582	+	64	189183842	-	OTT_0935	-	putative integrase
31.48	MEAN

3.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.