IslandPath Analysis: Orientia tsutsugamushi str. Ikeda



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.48   STD DEV: 3.15
Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
492	 35.41	+1	509500..510126	+	208	189183399	-	OTT_0492	-	putative conjugative transfer protein TraF
493	 35.71	+1	510202..511503	+	433	189183400	-	OTT_0493	-	putative conjugative transfer protein TraH
494	 37.20	+1	511503..511838	+	111	189183401	-	OTT_0494	-	putative conjugative transfer protein TraG
495	 32.30	0	512009..512977	+	322	189183402	-	OTT_0495	-	transposase
496	 29.27	0	512993..513583	-	196	189183403	-	OTT_0496	-	putative integrase
497	 30.70	0	514551..515081	+	176	189183404	-	OTT_0497	-	hypothetical protein
498	 27.23	-1	515568..515780	+	70	189183405	-	OTT_0498	-	transposase
499	 27.86	-1	516167..516367	+	66	189183406	-	OTT_0499	-	transposase
500	 32.33	0	516888..517385	-	165	189183407	-	OTT_0500	-	transposase
501	 29.89	0	517545..519695	+	716	189183408	uvrD	OTT_0501	-	DNA helicase II
502	 28.59	0	519687..520445	-	252	189183409	-	OTT_0502	-	transposase
503	 27.12	-1	521541..521894	-	117	189183410	-	OTT_0503	-	transposase
504	 27.92	-1	522050..522880	-	276	189183411	-	OTT_0504	-	hypothetical protein
505	 30.37	0	523699..525150	+	483	189183412	-	OTT_0505	-	sensor histidine kinase/response regulator/transporter hybrid protein
506	 30.22	0	525584..528253	+	889	189183413	polA	OTT_0506	-	DNA polymerase I (POL I)
507	 31.72	0	528319..529683	+	454	189183414	-	OTT_0507	-	GTP-binding protein, Era/Obg family
508	 26.02	-1	529692..530375	+	227	189183415	-	OTT_0508	-	hypothetical protein
509	 25.98	-1	530446..531519	+	357	189183416	-	OTT_0509	-	AFG1-like ATPase
510	 27.68	-1	531512..532165	+	217	189183417	tmk	OTT_0510	-	thymidylate kinase
511	 34.08	0	532310..534178	-	622	189183418	gidA	OTT_0511	-	glucose inhibited division protein A
512	 31.46	0	534818..536101	-	427	189183419	-	OTT_0512	-	hypothetical protein
513	 32.67	0	537149..537298	-	49	189183420	-	OTT_0513	-	putative integrase
514	 32.93	0	538046..539551	-	501	189183421	rho	OTT_0514	-	transcription termination factor Rho
515	 27.21	-1	541040..542068	+	342	189183422	hemE	OTT_0515	-	uroporphyrinogen decarboxylase
516	 27.05	-1	542061..543095	+	344	189183423	hemH	OTT_0516	-	probable ferrochelatase
517	 27.36	-1	543104..543538	+	144	189183424	-	OTT_0517	-	hypothetical protein
518	 31.58	0	543957..544184	+	75	189183425	-	OTT_0518	-	reverse transcriptase
519	 28.48	0	544569..544877	+	102	189183426	-	OTT_0519	-	transposase
520	 30.56	0	545689..545868	-	59	189183427	-	OTT_0520	-	putative conjugative transfer protein TraI
521	 33.74	0	545995..546240	-	81	189183428	-	OTT_0521	-	putative conjugative transfer protein TraI
522	 37.48	+1	546374..546880	-	168	189183429	-	OTT_0522	-	hypothetical protein
523	 43.73	+2	547194..547472	-	92	189183430	-	OTT_0523	-	hypothetical protein
524	 41.79	+2	547645..548034	-	129	189183431	-	OTT_0524	-	hypothetical protein
525	 36.52	+1	548044..548577	-	177	189183432	-	OTT_0525	-	hypothetical protein
526	 38.32	+2	548653..549834	-	393	189183433	-	OTT_0526	-	hypothetical protein
527	 40.28	+2	550048..550680	-	210	189183434	-	OTT_0527	-	hypothetical protein
528	 41.67	+2	550680..551087	-	135	189183435	-	OTT_0528	-	hypothetical protein
529	 35.32	+1	551084..551587	-	167	189183436	-	OTT_0529	-	hypothetical protein
530	 38.73	+2	551716..553494	-	592	189183437	-	OTT_0530	-	ABC transporter permease/ATP-binding protein
531	 42.82	+2	553506..554243	-	245	189183438	fabG	OTT_0531	-	3-ketoacyl-(acyl-carrier-protein) reductase
532	 42.04	+2	554390..554860	+	156	189183439	-	OTT_0532	-	transcriptional regulator (MarR family)
533	 40.84	+2	554857..555882	+	341	189183440	-	OTT_0533	-	hypothetical protein
534	 39.57	+2	556452..556916	+	154	189183441	-	OTT_0534	-	MutT/nudix family protein
535	 40.66	+2	556913..557458	+	181	189183442	-	OTT_0535	-	hypothetical protein
536	 36.93	+1	557472..557888	+	138	189183443	-	OTT_0536	-	hypothetical protein
537	 30.75	0	558342..558728	+	128	189183444	-	OTT_0537	-	hypothetical protein
538	 40.88	+2	558731..559207	+	158	189183445	-	OTT_0538	-	aminoglycoside phosphotransferase
539	 28.32	-1	559368..559706	-	112	189183446	-	OTT_0539	-	transposase
540	 29.98	0	559783..560289	-	168	189183447	-	OTT_0540	-	transposase
541	 28.80	0	560276..560650	-	124	189183448	-	OTT_0541	-	transposase
542	 40.50	+2	560985..561500	+	171	189183449	-	OTT_0542	-	hypothetical protein
543	 40.61	+2	561706..562200	+	164	189183450	-	OTT_0543	-	DNA gyrase inhibitor
544	 40.96	+2	562769..563122	+	117	189183451	-	OTT_0544	-	DNA gyrase inhibitor
545	 40.48	+2	563252..563797	+	181	189183452	-	OTT_0545	-	hypothetical protein
546	 38.38	+2	563876..564589	+	237	189183453	-	OTT_0546	-	dienelactone hydrolase family protein
547	 37.87	+2	564558..565460	-	300	189183454	-	OTT_0547	-	putative streptomycin-6-phosphotransferase
548	 34.65	+1	565895..567109	-	404	189183455	-	OTT_0548	-	putative conjugative transfer protein TraI
549	 32.82	0	567376..568158	-	260	189183456	-	OTT_0549	-	putative conjugative transfer protein TraA
550	 33.19	0	568215..568925	-	236	189183457	-	OTT_0550	-	putative conjugative transfer protein TraA
551	 33.18	0	568910..570208	-	432	189183458	-	OTT_0551	-	putative conjugative transfer protein TraA
552	 35.53	+1	570504..570959	+	151	189183459	-	OTT_0552	-	putative conjugative transfer protein TraD
553	 30.42	0	571027..571953	-	308	189183460	-	OTT_0553	-	hypothetical protein
554	 30.77	0	572074..572229	-	51	189183461	-	OTT_0554	-	RelA/SpoT-related protein
555	 31.55	0	572269..572661	-	130	189183462	-	OTT_0555	-	RelA/SpoT-related protein
556	 28.89	0	572703..573197	-	164	189183463	-	OTT_0556	-	hypothetical protein
557	 30.74	0	573216..573677	-	153	189183464	-	OTT_0557	-	hypothetical protein
558	 29.68	0	573738..574148	-	136	189183465	-	OTT_0558	-	hypothetical protein
559	 30.06	0	574156..574644	-	162	189183466	-	OTT_0559	-	hypothetical protein
560	 29.76	0	574834..575085	-	83	189183467	-	OTT_0560	-	hypothetical protein
561	 30.63	0	575308..575862	+	184	189183468	-	OTT_0561	-	hypothetical protein
562	 30.49	0	576004..576777	+	257	189183469	-	OTT_0562	-	hypothetical protein
563	 31.28	0	576930..577952	-	340	189183470	-	OTT_0563	-	replicative DNA helicase
564	 31.06	0	577961..579676	-	571	189183471	-	OTT_0564	-	hypothetical protein
565	 28.24	-1	580142..580534	+	130	189183472	-	OTT_0565	-	transposase
566	 31.17	0	580557..580787	+	76	189183473	-	OTT_0566	-	transposase
567	 29.29	0	580741..581037	+	98	189183474	-	OTT_0567	-	transposase
568	 33.04	0	581415..581759	-	114	189183475	-	OTT_0568	-	putative ferredoxin, 2Fe-2S (andrenodoxin-like)
569	 28.86	0	581776..583629	-	617	189183476	hscA	OTT_0569	-	chaperone protein HscA
570	 27.58	-1	583616..584119	-	167	189183477	hscB	OTT_0570	-	chaperone protein HscB
571	 32.00	0	584132..584506	-	124	189183478	hesB2	OTT_0571	-	HesB protein
572	 34.04	0	584516..584941	-	141	189183479	iscU	OTT_0572	-	NifU protein homolog
573	 32.94	0	584981..586252	-	423	189183480	spl1	OTT_0573	-	NifS protein homolog
574	 32.25	0	586267..587553	-	428	189183481	spl1	OTT_0574	-	NifS protein homolog
575	 30.20	0	587565..588011	-	148	189183482	-	OTT_0575	-	Rrf2 family protein
576	 33.90	0	588215..588916	+	233	189183483	-	OTT_0576	-	hypothetical protein
577	 31.09	0	589210..590457	+	415	189183484	ftsA	OTT_0577	-	cell division protein FtsA
578	 30.82	0	590436..591746	+	436	189183485	-	OTT_0578	-	hypothetical protein
579	 27.40	-1	591731..593482	+	583	189183486	-	OTT_0579	-	hypothetical protein
580	 28.77	0	593930..594367	+	145	189183487	-	OTT_0580	-	transposase
581	 33.90	0	594667..594843	-	58	189183488	-	OTT_0581	-	putative conjugative transfer protein TraD
582	 34.18	0	595505..596806	-	433	189183489	tme	OTT_0582	-	malate oxidoreductase and phosphate acetyltransferase
583	 28.16	-1	596826..597752	-	308	189183490	-	OTT_0583	-	hypothetical protein
584	 30.33	0	598061..598660	+	199	189183491	-	OTT_0584	-	hypothetical protein
585	 28.53	0	598789..599100	+	103	189183492	gltA	OTT_0585	-	citrate synthase
586	 29.10	0	599097..599852	-	251	189183493	-	OTT_0586	-	transposase
587	 29.95	0	599966..600172	-	68	189183494	-	OTT_0587	-	transposase
588	 28.64	0	600210..600614	-	134	189183495	atpC	OTT_0588	-	ATP synthase epsilon chain
589	 34.24	0	600611..602047	-	478	189183496	atpD	OTT_0589	-	ATP synthase beta chain
590	 30.53	0	602393..603532	-	379	189183497	capM	OTT_0590	-	CapM protein
591	 30.08	0	603568..604335	+	255	189183498	-	OTT_0591	-	hypothetical protein
31.48	MEAN

3.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.